Metagenome / Metatranscriptome Family F103810

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F103810
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	57 residues
Representative Sequence	MTEDDVRREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDTLKAKGLLKLDDDD
Number of Associated Samples	80
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	84.16 %
% of genes near scaffold ends (potentially truncated)	31.68 %
% of genes from short scaffolds (< 2000 bps)	89.11 %
Associated GOLD sequencing projects	74
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (73.267 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (44.555 % of family members)
Environment Ontology (ENVO)	Unclassified (44.554 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (68.317 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 62.96% β-sheet: 0.00% Coil/Unstructured: 37.04%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF00296	Bac_luciferase	5.94
PF00486	Trans_reg_C	4.95
PF13593	SBF_like	3.96
PF13610	DDE_Tnp_IS240	2.97
PF00072	Response_reg	0.99
PF02810	SEC-C	0.99
PF08544	GHMP_kinases_C	0.99
PF11994	DUF3489	0.99
PF00126	HTH_1	0.99
PF01738	DLH	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	5.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.27 %
All Organisms	root	All Organisms	26.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.27 %
cellular organisms	root	All Organisms → cellular organisms	26.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.27 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	26.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.27 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	21.78 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.27 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	19.80 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.27 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	7.92 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	4.95 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.99 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.27 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	7.92 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	1.98 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.99 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.27 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	7.92 %
Acidiphilium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidiphilium	1.98 %
Paenibacillaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae	0.99 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.27 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	7.92 %
Acidiphilium multivorum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidiphilium → Acidiphilium multivorum	1.98 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.99 %
Paenibacillaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.27 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	7.92 %
Acidiphilium multivorum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidiphilium → Acidiphilium multivorum	1.98 %
Bradyrhizobium sp. STM 3843	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. STM 3843	0.99 %
Paenibacillaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001545\|JGI12630J15595_10039312	Not Available	960	Open in IMG/M
3300003505\|JGIcombinedJ51221_10050298	Not Available	1582	Open in IMG/M
3300003505\|JGIcombinedJ51221_10085595	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1242	Open in IMG/M
3300005434\|Ga0070709_10183610	All Organisms → cellular organisms → Bacteria → Proteobacteria	1470	Open in IMG/M
3300005435\|Ga0070714_100029304	Not Available	4576	Open in IMG/M
3300005435\|Ga0070714_100805595	Not Available	910	Open in IMG/M
3300005436\|Ga0070713_101810544	Not Available	593	Open in IMG/M
3300005437\|Ga0070710_10195054	Not Available	1276	Open in IMG/M
3300005602\|Ga0070762_11021140	Not Available	568	Open in IMG/M
3300005610\|Ga0070763_10312472	Not Available	867	Open in IMG/M
3300005921\|Ga0070766_10027378	All Organisms → cellular organisms → Bacteria → Proteobacteria	3075	Open in IMG/M
3300006050\|Ga0075028_100840831	Not Available	562	Open in IMG/M
3300006172\|Ga0075018_10762806	Not Available	528	Open in IMG/M
3300006175\|Ga0070712_101022772	Not Available	715	Open in IMG/M
3300006175\|Ga0070712_101265370	Not Available	642	Open in IMG/M
3300006176\|Ga0070765_100935306	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	819	Open in IMG/M
3300007255\|Ga0099791_10254567	Not Available	833	Open in IMG/M
3300007788\|Ga0099795_10052612	Not Available	1488	Open in IMG/M
3300007788\|Ga0099795_10145014	Not Available	968	Open in IMG/M
3300009143\|Ga0099792_10272928	Not Available	993	Open in IMG/M
3300012203\|Ga0137399_10132274	Not Available	1973	Open in IMG/M
3300012582\|Ga0137358_10237169	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1242	Open in IMG/M
3300012685\|Ga0137397_10080066	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidiphilium → Acidiphilium multivorum	2375	Open in IMG/M
3300012917\|Ga0137395_10636083	Not Available	771	Open in IMG/M
3300012918\|Ga0137396_10140623	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidiphilium → Acidiphilium multivorum	1752	Open in IMG/M
3300012918\|Ga0137396_10910566	Not Available	644	Open in IMG/M
3300012923\|Ga0137359_10517625	Not Available	1051	Open in IMG/M
3300012957\|Ga0164303_10814105	Not Available	644	Open in IMG/M
3300012958\|Ga0164299_10470182	Not Available	828	Open in IMG/M
3300015242\|Ga0137412_10105558	Not Available	2288	Open in IMG/M
3300020199\|Ga0179592_10175188	Not Available	977	Open in IMG/M
3300020579\|Ga0210407_10121385	Not Available	1999	Open in IMG/M
3300020579\|Ga0210407_10403633	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1069	Open in IMG/M
3300020580\|Ga0210403_10029473	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4381	Open in IMG/M
3300020580\|Ga0210403_10207670	Not Available	1607	Open in IMG/M
3300020581\|Ga0210399_10313885	Not Available	1308	Open in IMG/M
3300020581\|Ga0210399_10400028	Not Available	1145	Open in IMG/M
3300020581\|Ga0210399_10809860	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	764	Open in IMG/M
3300020582\|Ga0210395_10611012	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	818	Open in IMG/M
3300020583\|Ga0210401_10445147	Not Available	1158	Open in IMG/M
3300020583\|Ga0210401_10935723	Not Available	725	Open in IMG/M
3300020583\|Ga0210401_10979690	Not Available	704	Open in IMG/M
3300021088\|Ga0210404_10114209	Not Available	1380	Open in IMG/M
3300021088\|Ga0210404_10250801	Not Available	963	Open in IMG/M
3300021088\|Ga0210404_10501908	Not Available	685	Open in IMG/M
3300021168\|Ga0210406_10748468	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	748	Open in IMG/M
3300021168\|Ga0210406_11269214	Not Available	532	Open in IMG/M
3300021170\|Ga0210400_10056535	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae	3057	Open in IMG/M
3300021170\|Ga0210400_10259390	All Organisms → cellular organisms → Bacteria	1423	Open in IMG/M
3300021170\|Ga0210400_10398128	Not Available	1135	Open in IMG/M
3300021170\|Ga0210400_10540840	Not Available	961	Open in IMG/M
3300021170\|Ga0210400_11545360	Not Available	525	Open in IMG/M
3300021171\|Ga0210405_10672284	Not Available	802	Open in IMG/M
3300021403\|Ga0210397_10142925	Not Available	1666	Open in IMG/M
3300021404\|Ga0210389_10063810	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. STM 3843	2824	Open in IMG/M
3300021405\|Ga0210387_10991492	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	736	Open in IMG/M
3300021406\|Ga0210386_10871687	Not Available	772	Open in IMG/M
3300021407\|Ga0210383_10100444	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2434	Open in IMG/M
3300021432\|Ga0210384_10893928	Not Available	788	Open in IMG/M
3300021433\|Ga0210391_11026695	Not Available	642	Open in IMG/M
3300021478\|Ga0210402_10240867	Not Available	1668	Open in IMG/M
3300021479\|Ga0210410_10173292	Not Available	1928	Open in IMG/M
3300021559\|Ga0210409_11117368	Not Available	663	Open in IMG/M
3300022530\|Ga0242658_1083212	Not Available	739	Open in IMG/M
3300022726\|Ga0242654_10313215	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	581	Open in IMG/M
3300023046\|Ga0233356_1002568	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1647	Open in IMG/M
3300024347\|Ga0179591_1012357	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1958	Open in IMG/M
3300025906\|Ga0207699_11387431	Not Available	520	Open in IMG/M
3300025915\|Ga0207693_10128049	Not Available	1996	Open in IMG/M
3300025916\|Ga0207663_11247778	Not Available	599	Open in IMG/M
3300026359\|Ga0257163_1056677	Not Available	627	Open in IMG/M
3300026369\|Ga0257152_1010608	Not Available	970	Open in IMG/M
3300026489\|Ga0257160_1003332	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1857	Open in IMG/M
3300026490\|Ga0257153_1037609	All Organisms → cellular organisms → Bacteria	999	Open in IMG/M
3300026496\|Ga0257157_1021584	Not Available	1048	Open in IMG/M
3300026496\|Ga0257157_1027430	Not Available	935	Open in IMG/M
3300026498\|Ga0257156_1091919	Not Available	630	Open in IMG/M
3300026984\|Ga0208732_1017550	Not Available	631	Open in IMG/M
3300026999\|Ga0207949_1020373	Not Available	608	Open in IMG/M
3300027073\|Ga0208366_1003117	Not Available	1532	Open in IMG/M
3300027074\|Ga0208092_103296	Not Available	935	Open in IMG/M
3300027102\|Ga0208728_101163	Not Available	781	Open in IMG/M
3300027109\|Ga0208603_1018852	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1112	Open in IMG/M
3300027174\|Ga0207948_1002542	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2041	Open in IMG/M
3300027521\|Ga0209524_1033755	Not Available	1072	Open in IMG/M
3300027603\|Ga0209331_1038001	Not Available	1230	Open in IMG/M
3300027635\|Ga0209625_1154641	Not Available	511	Open in IMG/M
3300027684\|Ga0209626_1064878	Not Available	923	Open in IMG/M
3300027727\|Ga0209328_10055961	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1211	Open in IMG/M
3300027884\|Ga0209275_10229190	Not Available	1013	Open in IMG/M
3300027903\|Ga0209488_10114820	All Organisms → cellular organisms → Bacteria	2025	Open in IMG/M
3300027908\|Ga0209006_10274061	Not Available	1446	Open in IMG/M
3300028047\|Ga0209526_10052410	All Organisms → cellular organisms → Bacteria	2872	Open in IMG/M
3300028536\|Ga0137415_11184855	Not Available	579	Open in IMG/M
3300029636\|Ga0222749_10311636	Not Available	816	Open in IMG/M
3300029636\|Ga0222749_10474648	Not Available	673	Open in IMG/M
3300029636\|Ga0222749_10837144	Not Available	503	Open in IMG/M
3300031057\|Ga0170834_100779757	Not Available	772	Open in IMG/M
3300031128\|Ga0170823_17233430	Not Available	610	Open in IMG/M
3300031231\|Ga0170824_121251180	Not Available	774	Open in IMG/M
3300031718\|Ga0307474_10276325	Not Available	1291	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	98.02%
Aquatic	Environmental → Aquatic	1.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	98.02%
Sediment	Environmental → Aquatic → Sediment	1.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	66.34%
Loam	Environmental → Terrestrial → Soil → Loam	31.68%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.98%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	48.51%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	21.78%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.90%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	44.55%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	16.83%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	15.84%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.92%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	4.95%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.97%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.98%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022530	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300023046	Soil microbial communities from Shasta-Trinity National Forest, California, United States - GEON-SFM-MS	Environmental	Open in IMG/M
3300024347	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026359	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-A	Environmental	Open in IMG/M
3300026369	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-05-A	Environmental	Open in IMG/M
3300026489	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-A	Environmental	Open in IMG/M
3300026490	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-A	Environmental	Open in IMG/M
3300026496	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-A	Environmental	Open in IMG/M
3300026498	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-A	Environmental	Open in IMG/M
3300026984	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF048 (SPAdes)	Environmental	Open in IMG/M
3300026999	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF044 (SPAdes)	Environmental	Open in IMG/M
3300027073	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF010 (SPAdes)	Environmental	Open in IMG/M
3300027074	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF014 (SPAdes)	Environmental	Open in IMG/M
3300027102	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF028 (SPAdes)	Environmental	Open in IMG/M
3300027109	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF008 (SPAdes)	Environmental	Open in IMG/M
3300027174	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF040 (SPAdes)	Environmental	Open in IMG/M
3300027521	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027603	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027635	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027684	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027727	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12630J15595_100393122	3300001545	Forest Soil	MTEDDVGREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDTLKAKGVLKLDDDDYSPISSKAGLPARY*
JGIcombinedJ51221_100502982	3300003505	Forest Soil	MTEDDVXREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDTLKAKGLLKLDDDDYSPISSKEGLPARY*
JGIcombinedJ51221_100855951	3300003505	Forest Soil	MTEDDVRREIFQAIIQCRGRNGPLINQRETCEVLATGVFDTLKAKGLLKLDDD*
Ga0070709_101836102	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MTEDDVRREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDTLKAKELLKLDDDDYSLILSKAG*
Ga0070714_1000293048	3300005435	Agricultural Soil	VTEDDVRREIFQAIIQCRGRNGPLINQRDTCEVLAAGVFDTLKANGLLKLDADD*
Ga0070714_1008055952	3300005435	Agricultural Soil	MTEDDVRREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDTLKAKELLKLDDDYSPISSKAG*
Ga0070713_1018105442	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MTEDDVRREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDTLKAKELLKLDDDDYSPISSKAG*
Ga0070710_101950541	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MTEDDVRREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDTLKAKGLLKLDDE*
Ga0070762_110211401	3300005602	Soil	MTEDDVRREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDTLKAKGLLKLDDDDYSPISSKERLPARY*
Ga0070763_103124721	3300005610	Soil	MTEDDVRREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDTLKAKGVLKLDDDDYSPISSKAG*
Ga0070766_100273787	3300005921	Soil	MTEDDVRREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDTLKAKGVLKLDDDDYSPISS
Ga0075028_1008408311	3300006050	Watersheds	MTEDDVRREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDTLKAKGVLKLDDDYSPISSKAG*
Ga0075018_107628062	3300006172	Watersheds	MTEDDVRREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDTLKAKGLLKLDDD*
Ga0070712_1010227722	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MTDDDVRREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDTLKAKGFLKLDDDDYSPISSKAG*
Ga0070712_1012653702	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	VTEDDVRREIFQAIIQCRGRNGPLINQRDTCEVLAAGVFDTLKANGLL
Ga0070765_1009353062	3300006176	Soil	MTEDDVRREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDTLKAKGLLKLDDDYSPISSKAG*
Ga0099791_102545671	3300007255	Vadose Zone Soil	MSEDDVRREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDTLKAKGLLKLDDDD*
Ga0099795_100526122	3300007788	Vadose Zone Soil	MSEDDVRREIFQAIIQCRGYNGPLINQRDTCEVLAAGVFDTPKGKGLLKLDDDD*
Ga0099795_101450142	3300007788	Vadose Zone Soil	MTEDDVRREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDTLKAKGVLKLDNDDYSPISSKAG*
Ga0099792_102729281	3300009143	Vadose Zone Soil	MSEDDVRREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDILKAKGLLKLDDDD*
Ga0137399_101322743	3300012203	Vadose Zone Soil	MSEDDVRREIFQAIIQCRGHNGPLINQRDICEVLAAGVFDTLKGKGLLKLDDDD*
Ga0137358_102371692	3300012582	Vadose Zone Soil	MTEDDVRREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDTLKAKGLLKLDDDDFSSISSKAG*
Ga0137397_100800663	3300012685	Vadose Zone Soil	MSEDDVRREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDTLKGKGLLKLDDDD*
Ga0137395_106360831	3300012917	Vadose Zone Soil	MSEDDVRREIFQAIIQCRGHNGPLINQRDICEVLAAGVFDTLKAKGLLKLDDDD*
Ga0137396_101406232	3300012918	Vadose Zone Soil	MSEDDVRREIFQAIIQCRGHNGPLINQRDNYEELAAGVFDTLKGKGLLKLDDD*
Ga0137396_109105661	3300012918	Vadose Zone Soil	MTEDDVRREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDTLKGKGLLKLDDDD*
Ga0137359_105176251	3300012923	Vadose Zone Soil	MTEDDVRREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDTLKAKGLLKLDDDDYSSISSKAG*
Ga0164303_108141052	3300012957	Soil	MTEDDVRREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDTLKAKELL
Ga0164299_104701822	3300012958	Soil	MTEDDVCREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDNLKAKGFLKLDDDDYSLILSKAG*
Ga0137412_101055582	3300015242	Vadose Zone Soil	MTEDDVRREIFQAIIQCRGHNGPLINQRDICEVLAAGVFDTLKGKGLLKLDDDD*
Ga0179592_101751881	3300020199	Vadose Zone Soil	MSEDDVRREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDTLKGKGLLKLDDDD
Ga0210407_101213853	3300020579	Soil	MTEDDVRREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDTLKAKGLLKLDDDYSPISSKAG
Ga0210407_104036333	3300020579	Soil	MTEDDVCREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDTLKAKG
Ga0210403_100294736	3300020580	Soil	MTEDDVRREIFQAIIQCRGHNGPLINERGTCEVLAAGVFNTLKAKGLLKLDDE
Ga0210403_102076702	3300020580	Soil	MTEDDVRREIFQAIIQCRGRNGPLINQRETCEVLATGVFDTLKAKGLLKLDDD
Ga0210399_103138852	3300020581	Soil	MTEDDVCREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDTLKAKGLLKLDDDYSSIFK
Ga0210399_104000283	3300020581	Soil	RRAIFQAIVQCRGQNGPLINQRDTCEVLAAGVFDTLKAKGLLKLDDDN
Ga0210399_108098601	3300020581	Soil	TEDDVRREVFQAIIQCRGRNGPLINQRETCEVLATGVFDTLKAKGLLKLDDD
Ga0210395_106110121	3300020582	Soil	DVRCEIFQAIIQCRGRNGPLINQRETCEVLATGVFDTLKAKGLLKLDDD
Ga0210401_104451472	3300020583	Soil	TEDDVRREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDTLKAKGLLKLDDDDYSPISSKAG
Ga0210401_109357231	3300020583	Soil	MTEDDVRREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDTLKAKGLL
Ga0210401_109796901	3300020583	Soil	MTEDDVRREIFQAIIQCRGHNGPLINERDTCEVLAAGVFNTLKAKGLLKLDDE
Ga0210404_101142092	3300021088	Soil	MTEDDVCREIFQAIIQCRGHNGPLINQRDACEVLAAGVFDTLKAKGLLKLDDDYSAISSKAG
Ga0210404_102508011	3300021088	Soil	MTEDDVRREIFQAIIQCRGHNGPLINQRDTCEVLAAGVF
Ga0210404_105019082	3300021088	Soil	MTEDDVRREIFQAIIQCRGHNGPLINERDTCEVLAAGVFNTLKAKGLLRLDDD
Ga0210406_107484683	3300021168	Soil	TEDDVCREIFQAIIQCRDHNGPLINQRDTCEVLAAGVFDTLKAKGVLKLDDDDYSAISSKAG
Ga0210406_112692141	3300021168	Soil	VRREIFQAIIQCRGRDGPLINQRETCEVLATGVFDTLKAKGLLKLDD
Ga0210400_100565355	3300021170	Soil	MTEDDVRREIFQAIIQCRGHNGPLINERDTCEVLAAGVFNTLKAKGLLSWTTTNP
Ga0210400_102593901	3300021170	Soil	MTEDDVRREIFQAIIQCRGRNGPLINQRETCEVLATGVFDTLKAKGLLKLDDDYPRF
Ga0210400_103981281	3300021170	Soil	MTEDDVRREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDTLKAKELLKLDDDD
Ga0210400_105408402	3300021170	Soil	DVRREIFQAIIQCRGHNGPLINQRDTCEVLTAGVFDTLKAKGLLKLDDDDFSSISSKAG
Ga0210400_115453602	3300021170	Soil	DKLMTEDDVRRAIFQAIVQCRGQNGPLINQRDTCEVLAAGVFDTLKAKGLLKLDDDN
Ga0210405_106722842	3300021171	Soil	MTEDDVRREIFQAIIQCRGRNGPLINQRETCEVLAAGVFDTLKAKGLLKLDDD
Ga0210397_101429252	3300021403	Soil	VRREIFQAIIQCRGRDGPLINQRETCEVLATGVFDTLKAKGLLKLDDD
Ga0210389_100638104	3300021404	Soil	MTEDDVRREIFQAIIQCRGHNGPLRDTYEVLAAGVFDTLKAKGLLKLDDDDYSPISSKAG
Ga0210387_109914922	3300021405	Soil	EIFQAIIQCRGHNGPLINERGTCEVLAAGVFNTLKAKGLLKLDDE
Ga0210386_108716872	3300021406	Soil	MTEDDVRREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDTLKAKGLLKLDDDYSAISSKAG
Ga0210383_101004442	3300021407	Soil	MTEDDVRREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDTLKAKELLKLDDDYSSISSKAG
Ga0210384_108939282	3300021432	Soil	IFQAIVQCRGQNGPLINQRDTCEVLAAGVFDTLKAKGLLKLDDDN
Ga0210391_110266952	3300021433	Soil	MTEDDVRREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDTLKAKELLKL
Ga0210402_102408673	3300021478	Soil	DKLMTEDDVRREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDTLKAKELLKLDDDYSPISSKAG
Ga0210410_101732924	3300021479	Soil	MTEDDVRRAIFQAIVQCRGQNGPLINQRDTCEVLAAGVFDTLKAKGLLKLDDDN
Ga0210409_111173682	3300021559	Soil	TEDDVRREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDTLKAKELLKLDDDYSPISSKA
Ga0242658_10832122	3300022530	Soil	MTEDDVCREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDTLKAKGVLKLDDDDYSAISSKAG
Ga0242654_103132151	3300022726	Soil	MTEDDVRREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDTLKAKELLKLDDDDYSSISSKAG
Ga0233356_10025682	3300023046	Soil	MTEDDVRREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDTLKAKGVLKLDNDDYSPISSKAG
Ga0179591_10123572	3300024347	Vadose Zone Soil	MSEDDVRREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDILKAKGLLKLDDDD
Ga0207699_113874312	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MTEDDVRREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDTLKA
Ga0207693_101280495	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MTEDDVRREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDTLKAKGFLKLDDDDYSPISSKAG
Ga0207663_112477781	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MTEDDVRREIFQAIIQCRGHNGPLINQRDTREVLAAGVFDTLKAKELLKLDDDYSPISS
Ga0257163_10566772	3300026359	Soil	MSEDDVRREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDTLKAKGVLKLDDDDYSPISSKEG
Ga0257152_10106083	3300026369	Soil	MTEDDVRREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDTLKAKGLLKLDNGDYSPISSKAG
Ga0257160_10033321	3300026489	Soil	DVRREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDTLKAKGLLKLDDDDYSSISSKAG
Ga0257153_10376092	3300026490	Soil	MTEDDVRREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDTLKAKGLLKLDDDD
Ga0257157_10215843	3300026496	Soil	MSEDDVRREIFQAIIQCRGHNGPLINQRDICEVLAAGVFDTLKGKGLLKLDDD
Ga0257157_10274301	3300026496	Soil	MTEDDVRREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDTLKAKGLLKLDDDDYSSISSKAG
Ga0257156_10919191	3300026498	Soil	MTEDDVRREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDTLKAKGVLKLDDDDYS
Ga0208732_10175501	3300026984	Forest Soil	MTEDDVRREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDTLKAKGLLKLDDDDYSAISSKAG
Ga0207949_10203731	3300026999	Forest Soil	MTEDDVRREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDTLKAKGVLKLDDDDYSAISSKAG
Ga0208366_10031172	3300027073	Forest Soil	MTEDDVRREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDTLKAKGLLKLDDD
Ga0208092_1032963	3300027074	Forest Soil	MTEDDVCREIFQAIIQCRGRNGPLINQRETCEVLATGVFDTLKAKGLLKLDDDN
Ga0208728_1011632	3300027102	Forest Soil	MTEDDVRREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFETLKAKGLLKLDDDN
Ga0208603_10188522	3300027109	Forest Soil	MTEDDVRREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDTLKAKGVLKLDDDDYSPISSKAG
Ga0207948_10025421	3300027174	Forest Soil	EDDVRREIFQAIIQCRGRNGPLINQRETCEVLATGVFDTLKAKGLLKLDDD
Ga0209524_10337552	3300027521	Forest Soil	MTEDDVRREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDTLKAKGLLKLDDDDFSSISSKAG
Ga0209331_10380012	3300027603	Forest Soil	MTEDDVRREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDTLKAKGVLKLDDDDYSSISSKAG
Ga0209625_11546411	3300027635	Forest Soil	MTEDDVRREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDTLKAKGVLKLDDDDYSPISSKAGLPARY
Ga0209626_10648781	3300027684	Forest Soil	MTEDDVRREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDTLKAKGLLRLDDD
Ga0209328_100559613	3300027727	Forest Soil	MTEDDVRREIFQAIIQRRGHNGPLINQRDTCEDLAGGVFDTL
Ga0209275_102291903	3300027884	Soil	MTEDDVRREIFQAIIQCRGHNGPLRNQRDTCEVLAAGVFDTLKAKGLLKLDDDDYSPISSKERLPARY
Ga0209488_101148203	3300027903	Vadose Zone Soil	MSEDDVRREIFQAIIQCRGHNGPLINQRDICEVLAAGVFDTLKGKGLLKLDDDD
Ga0209006_102740612	3300027908	Forest Soil	MTEDDVRREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDTLKAKRVLKLDDDYSPISSKAGLPARY
Ga0209526_100524105	3300028047	Forest Soil	MTEDDVGREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDTLKAKGVLKLDDDDYSPISSKAGLPARY
Ga0137415_111848551	3300028536	Vadose Zone Soil	MTEDDVRREIFQAIIQCRGHNGPLISQRDTCEVLAVGVFDTLKAKGLLKLDDDDYSSISSKAG
Ga0222749_103116361	3300029636	Soil	EIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDTLKAKGLLKLDDDDYSAISSKAG
Ga0222749_104746482	3300029636	Soil	MSEDDVRREIFQAIIQCRGHNGPLISQRDICEVLAAGVFDTLKGKGLLKLDDDD
Ga0222749_108371442	3300029636	Soil	EIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDTLKAKELLKLDDDYSSISSKAG
Ga0170834_1007797571	3300031057	Forest Soil	MTEDDVRREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDTLKAKGLLKLDDDDYSPISSKEGLPARY
Ga0170823_172334302	3300031128	Forest Soil	MTEDDVRREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDTLKAKGVLKLDDDDYSPISSKEGLPARY
Ga0170824_1212511801	3300031231	Forest Soil	MTEDDVRREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFD
Ga0307474_102763252	3300031718	Hardwood Forest Soil	MTEDDVRREIFQAIIQCRGHNGPLINQRDTCEVLAAGVFDTLKAKGLLKLDDE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F103810

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences