Metagenome / Metatranscriptome Family F103822

Basic Information
Family ID	F103822
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	56 residues
Representative Sequence	MSSALRTRQAGHEALPPEIYLPLVDSLFKEGRTLLIGTIFVIGSVLITYWKTGEI
Number of Associated Samples	86
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	78
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Most Common Taxonomy
Group	Unclassified (100.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil (15.842 % of family members)
Environment Ontology (ENVO)	Unclassified (51.485 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (44.554 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 43.37% β-sheet: 0.00% Coil/Unstructured: 56.63%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF00378	ECH_1	37.62
PF02771	Acyl-CoA_dh_N	0.99
PF07690	MFS_1	0.99
PF13847	Methyltransf_31	0.99
PF00583	Acetyltransf_1	0.99
PF00725	3HCDH	0.99
PF02738	MoCoBD_1	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG1250	3-hydroxyacyl-CoA dehydrogenase	Lipid transport and metabolism [I]	0.99
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.99

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.03%
Host-Associated	Host-Associated	2.97%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	54.46%
Aquatic	Environmental → Aquatic	42.57%
Plants	Host-Associated → Plants	2.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	48.51%
Freshwater	Environmental → Aquatic → Freshwater	34.65%
Sediment	Environmental → Aquatic → Sediment	6.93%
Peat	Environmental → Terrestrial → Peat	5.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.97%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.99%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	34.65%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	28.71%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	13.86%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.93%
Loam	Environmental → Terrestrial → Soil → Loam	5.94%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	5.94%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.98%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.99%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	23.76%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.78%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	13.86%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.93%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	5.94%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.94%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	5.94%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	4.95%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.97%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.97%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.98%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.99%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.99%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	15.84%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	15.84%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	8.91%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	6.93%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	5.94%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	5.94%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	5.94%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	4.95%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	4.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.97%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.97%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.98%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.98%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.99%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.99%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.99%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.99%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.99%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.99%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental	Open in IMG/M
3300009637	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_40	Environmental	Open in IMG/M
3300009645	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_40	Environmental	Open in IMG/M
3300009646	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_150	Environmental	Open in IMG/M
3300009672	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG	Environmental	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300012004	Permafrost microbial communities from Nunavut, Canada - A30_5cm_6M	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014156	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG	Environmental	Open in IMG/M
3300014160	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_30_metaG	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300014199	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaG	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017931	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_100	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300017998	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_150	Environmental	Open in IMG/M
3300018003	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_40	Environmental	Open in IMG/M
3300018004	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_100	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018015	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_150	Environmental	Open in IMG/M
3300018019	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018046	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018057	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300019082	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_40	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300025134	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG (SPAdes)	Environmental	Open in IMG/M
3300025812	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_150 (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300027568	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG (SPAdes)	Environmental	Open in IMG/M
3300027662	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028806	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_1	Environmental	Open in IMG/M
3300028808	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_2	Environmental	Open in IMG/M
3300029817	Soil microbial communities from Marcell Experimental Forest, Minnesota, USA - Bog25	Environmental	Open in IMG/M
3300030053	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2	Environmental	Open in IMG/M
3300030509	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_2	Environmental	Open in IMG/M
3300030617	II_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030706	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG (v2)	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12270J11330_101508122	3300000567	Peatlands Soil	MSPALQVRRPAQGHEPLPPDVYLPLVDSLFKEGRTLLIGTIFVIGSG
JGI12627J18819_102896891	3300001867	Forest Soil	MSSALRTRQPHEALPPEIYLPLVDSLFKEARTLLVGTLFVIGSILITYWKT
Ga0062385_105008401	3300004080	Bog Forest Soil	MRSAFRTRQPHEALPPEIYLPLVDSLYQDRRTLLLGTIFVTGSVF
Ga0066388_1041337892	3300005332	Tropical Forest Soil	MSLALRTRRPVEQQETLPPEIYIPLVDSLFKDGRTLLAGTIFVTGSIFITYWKTDEPL
Ga0070662_1008252701	3300005457	Corn Rhizosphere	MSSALRTRQPHEALPPEIYLPLVDSLFKEARTLLVGTLFVIGSVLLTY
Ga0070706_1019330771	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MGSALRTNQPHEALPPEIYLPLVDSLFKEGRTLFAGTILGAGSVFI
Ga0075015_1003631692	3300006102	Watersheds	MRLAHRLRRPARKHQALPAEIYLPLVDSLYQDRRTLLLGIIFVIGSVFITYWKTGEPLLL
Ga0075030_1002219571	3300006162	Watersheds	MGSALRTNQPHEALPPEIYLPLVDSLFKEGRTLFAGTILGAGSIFITYWKTGEALL
Ga0075018_103523412	3300006172	Watersheds	MSSAFRTRQPHEALPPEIYIPLVDSLFKEGQTLFVGIFFVIGSV
Ga0075014_1000151721	3300006174	Watersheds	MGSALRTNQPHEALPPEIYLPLVDSLFKEGRTLFAGTILGAGSIFITYWKTGE
Ga0070712_1014925651	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MGSALRTNQPHEALPPEIYLPLVDSLFKEGRTLFAGTILGAGSVFITYW
Ga0075021_101377353	3300006354	Watersheds	MGSALRTNQPHEALPPEIYLPLVDSLFKEGRTLFAGTILGAGSIFITYWKTGEAL
Ga0116214_11668951	3300009520	Peatlands Soil	MSPAFQVRRPAQGREPLPPDVYLPLVDSLFKEGRTFRIGTIFV
Ga0116218_10782121	3300009522	Peatlands Soil	MGSALRTNQPHEALPPEIYLPLVDSLFKEGRTLFAGTILGAGSIF
Ga0116221_14441211	3300009523	Peatlands Soil	MSPALQVRRPAQGHEPLPPDVYLPLVDSLFKEGRTLLIGTIFVIGSVLITYWKT
Ga0116220_101842841	3300009525	Peatlands Soil	MGSAFRTRQPHEALPPEIYLPLVDSLYQEGRTLFVGTIFVTASVF
Ga0116118_11892681	3300009637	Peatland	MGSALRTRRAGHEALPPEIYLPLVDSLFKEGRTLFIGTIFVIGSVFITYWKTGEILILYCAAAIFLVA
Ga0116106_11101711	3300009645	Peatland	MGSALRTRRAGHEALPPEIYLPLVDSLFKEGRTLFIGTIFVIGSVFITYWKTG
Ga0116132_10675212	3300009646	Peatland	MSSALRIRRPVQGNEALPPEIYLPLVDSLYEDGRTLFAGIILVSGSVFITYWRTGE
Ga0116132_12736891	3300009646	Peatland	MGAALRRRRAVQGHEALPPESYLPLVDSLFKDGRTLLAGTIFVTGSV
Ga0116215_11030831	3300009672	Peatlands Soil	MSPALQVRRPAPGHEPLPPDVYLPLVDSLFKEGRTFLIGTIFVISSVLITYWKTGEILILYCAVAI
Ga0116215_11750761	3300009672	Peatlands Soil	MGAALRRRRAVQGHEALPPESYLPLVDSLFKDGRTLLAGTIFVTGSVFITYWKTGEIL
Ga0116224_104022001	3300009683	Peatlands Soil	MSPALQVRRPAPGHEPLPLEVYLPLVDSLFKEGRTFLIGTIFVI
Ga0116216_106723291	3300009698	Peatlands Soil	MSPEFQLRKSAHEALPPEIYIPLVDSLFKEGRTLFIGTIFVIGSVFITYWKTGEILILYCAAAIFLVACARGI
Ga0116219_104350072	3300009824	Peatlands Soil	MGAALRRRRAVQGHEALPPESYLPLVDSLFKDGRTLLAGTIFVTGSVFITYWKTGEILVLYCALAFVLVACVRG
Ga0134128_120690271	3300010373	Terrestrial Soil	MGSAPRTNQPHEALPPEIYLPLVDSLFKEGRTLFAGTILGA
Ga0136449_1013892392	3300010379	Peatlands Soil	MSPALQVRRPAQGHEPLPPEVYLPLVDSLFKEGRTLLIGTIFVIGSVLITYWKTGEILILYCALAIS
Ga0120134_10768181	3300012004	Permafrost	MSLAFRTHRPAQKQETLPPEIYIPLVDSLFKDGRTLLAGTIFVTGSIFITYWKTDELLLLGPAGGGGRGNRFS*
Ga0157378_121710492	3300013297	Miscanthus Rhizosphere	MSLALRTRRPVEQQETLPPEIYIPLVDSLFKDGRTLLAGTIFVTGSIFITYWKTDEPLLLACTFAVVLVAAARGMLVHA
Ga0181518_105171182	3300014156	Bog	MSPALQVRRPAPGHEPLPPDVYLPLVDSLFKEGRTFLIGTIFVISSVLITYWKTGEILILYCALADRAPR
Ga0181517_101307741	3300014160	Bog	MSSAFRTREPHETLPAEIYIPLVDSLFKEGTALFMGVIFV
Ga0181532_102860771	3300014164	Bog	MSSALRIRRPVQGHEALPADIYLPLVDSLFKDSRTLVSGSVFATVAIFTTYWKTGEIILLYCAMAIVLVACARG
Ga0181532_103217371	3300014164	Bog	MHIMSSARRIGQSGHEVLPLEVYLPLVDSLYRDGRTLFAGTIFGAGSIVVTYWKTGDVLL
Ga0181523_106124332	3300014165	Bog	MSRALRTRRPLQEREALPPEIYLSLVDSLYKDGRTLLVGIVLVAGAIFATYWKTGDILLFYC
Ga0181535_106515552	3300014199	Bog	MSRALRTRRPLQEREALPPEIYLSLVDSLYKDGRTLLVGIVLVAGAIFATYWKTGDI
Ga0132256_1001287831	3300015372	Arabidopsis Rhizosphere	MSLALRTHRPVEQQETLPPEIYIPLVDSLFKDGRTLLAGTIFVTGSIFITYWKTD
Ga0182040_115349321	3300016387	Soil	MSSALRTRQPHEALPPEIYLPLVDSLFKEARTLLVGTLFVIGSV
Ga0187802_103565611	3300017822	Freshwater Sediment	MSSALRFRRPVQGHEALPADIYLPLVDSLFKEGTTLLMGTIFVIG
Ga0187877_11436821	3300017931	Peatland	MSPAFQVRRPAQGREPLPPDVYLPLVDSLFKEGRTFLIGTIFVISSVLITYWKTG
Ga0187801_100312803	3300017933	Freshwater Sediment	MSPAFQVRRPTQGREPLPPDVYLPLVDSLFKEGRTFLIGTIFVISSVLITYWKTGEILILYCALAI
Ga0187819_108298572	3300017943	Freshwater Sediment	MSPALQVRRPAQGHEPLPPEVYLPLVDSLFKEGRTLLIGTIFVIGSVLITYWKTGEILILYCALAISAV
Ga0187847_107697082	3300017948	Peatland	MSSARPIGQNGPEALPAEVYLPLVDSLFKEGRTLLIGTIFVIGSVLLTYWKTGEILIFYC
Ga0187817_108205792	3300017955	Freshwater Sediment	MSFALRIRRPVQAYEALPADIYLPLVDSLYKDSRTLISGSVFAAIAIFTTYWKTGEIILLYCAIA
Ga0187783_104066502	3300017970	Tropical Peatland	MRLARQLRRPTRKHEALPAEMYLPLVDSLYQDGRTLLVGTVLVTASVFITYWKTGEVLLFYCA
Ga0187783_114086472	3300017970	Tropical Peatland	MSSARRTRQLHEALPPEIYLPLVNSLFQDARSLITG
Ga0187781_109936491	3300017972	Tropical Peatland	MSAALRADQSRHEALPAEIYLPLVDSLYRGGNTLLTGT
Ga0187782_105090281	3300017975	Tropical Peatland	MSSALRTRQPHEALPPEIYLPLVDSLFKEARTLLVGTLFVIGSVLVTYWKTGDVLILYVA
Ga0187870_12810002	3300017998	Peatland	MSSALRIRRPVQGNEALPPEIYLPLVDSLYEDGRTLFAGIILVSGSVFI
Ga0187876_11492661	3300018003	Peatland	MSPALRIRRPFQGHEALPPDIYLPLVDSLYQDRRTLLAGTIFVTGSVFITFWKTGEI
Ga0187865_12960662	3300018004	Peatland	MSSALRIRRPVQVHESLPADIYLPLVDSLFKEGTTLLIGTIFVIGSVFSTYWKTGEILILYCA
Ga0187805_100559911	3300018007	Freshwater Sediment	MGSALRTNQPHEALPPEIYLPLVDSLFKEGRTLFAGTILGAG
Ga0187805_103296181	3300018007	Freshwater Sediment	MSLAFRTSKGGHEALPPEIYIQLVDSLFKEGRTLLIGLIFVIGSVFVTYWKTGDILILSCALAM
Ga0187866_11521571	3300018015	Peatland	MSPALQVRRPAPGHEPLPPEVYLPLVDSLFKEGRTFLIGTILVISSVLITYWKTGEILILYCA
Ga0187874_103751571	3300018019	Peatland	MSSALRIRRPVQVHESLPADIYLPLVDSLYKDSRTLISGSVFAAIAIFTTYWKTGEIIL
Ga0187883_105778832	3300018037	Peatland	MSPALQVRRPAPGHEPLPPDVYLPLVDSLFKEGRTFLIGTIFVISSVLITYWKTGEILILYCALADRAPRVRLATSHR
Ga0187883_107381541	3300018037	Peatland	MSPALRTRQPIPGNEALPLEIYLPLVDSLYQDSRSLLLGNLIVTASAFITYWKT
Ga0187862_102549172	3300018040	Peatland	MSSALLIRRPVQGHEALPADIYLPLVDSLFKDSRTLVSGSVFATVAIFTTYWKTGEIILLYCAMAIVLVACARG
Ga0187862_104483431	3300018040	Peatland	MSSALRTRQAGHEALPPEIYLPLVDSLFKEGRTLLIGTIFVIGSVLITYWKTGEI
Ga0187862_108056711	3300018040	Peatland	MSPALQVRRPAQGHEPLPPDVYLPLVDSLFKEGRTLLIGTIFVIGSVLITYWKTGEILIL
Ga0187851_102515952	3300018046	Peatland	MSSALRIRRPIQGYEALPADIYIPLVDSLFKEGTALLMGIIFVVGSVLSTYWK
Ga0187859_104105261	3300018047	Peatland	MSRALRTRRPLQEREALPPEIYLSLVDSLYKDGRTLLVGIVLVAGAIFATYWKTGDILL
Ga0187858_107115601	3300018057	Peatland	MSPALRIRRPVEGHEALPADIYLPLVDSLYQDTRTLLLGNLIVTGSAFLTYWKTNEILLLYCTLAI
Ga0187772_101237951	3300018085	Tropical Peatland	MSSAPPTRRTIPNNEALPPEIYLPLVDSLYQDGRTLLVGTVLVSGHIFITYWKTHDIALLCCAA
Ga0187772_110273441	3300018085	Tropical Peatland	MSSALRTRQPHEALPPEIYLPLVDSLFKEARTLLVGTLFVIGSVLVTYWKTGDVLI
Ga0187772_113017622	3300018085	Tropical Peatland	MSPALQVRRPARGHETLPADIYLPLVDSLFKEGTTLLMGTIFVIGSVFSTYWKTGEILILYCAIAIALVACVRGIM
Ga0187769_100825351	3300018086	Tropical Peatland	MSTALRSSRIGPEALPPDIYVTLVDSLYEDRRTLVSGSIFATIAIFTTYWKTGEIILLYCAIAVVL
Ga0187770_113877202	3300018090	Tropical Peatland	MKVTRTRETAHDALPADIYLPLVDSLFKEGRSLFL
Ga0187852_14349101	3300019082	Peatland	MSPALRPRQTGHEVLPSDIYLPMVDSLYQDGRTLLLGMIFVTGSVFVTYWKTGEILLLYCALAIV
Ga0210401_101894213	3300020583	Soil	MSSARRTHQPHEALPPEIYLPLVDSLFQDARSLTTGSVFLTLSVLITYWKTG
Ga0210393_100825284	3300021401	Soil	MSSALRTRQPHEALPPEIYLPLVDSLFKEARTLLVGTLFVIGSILVT
Ga0207416_11962312	3300025134	Iron-Sulfur Acid Spring	MSSAFRSRQPHEALPPEIYLPLVDSLFKEGRTLLIGTLFVIGSVLITY
Ga0208457_10496811	3300025812	Peatland	MRPALRRRQPVQGHEALPPEIYIPLVDSLYKDGRTLLAGTIFVTGSVFITYWK
Ga0207693_111970391	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MGSALRTNQPHEALPPEIYLPLVDSLFKEGRTLFAGTILGACSVFITYWKTGEPLLL
Ga0208042_10183111	3300027568	Peatlands Soil	MRLAHRLRRPARKHQALPAEIYLPLVDSLYQDRRTLLLGIIFVIGSVFITYWKTG
Ga0208565_10614252	3300027662	Peatlands Soil	MSPALQIRRPAQGHEPLPPDVYIPLVDSLFKEGRTLLIGTIFVIGSVLITYWKTGEILILYCAL
Ga0208565_11361531	3300027662	Peatlands Soil	MGAALRRRRAVQGHEALPPESYLPLVDSLFKDGRTLLAGTIFVTGSVFITYWKTG
Ga0209040_103529151	3300027824	Bog Forest Soil	MSSAFRTRQPHEALPPEIYLPLVDSLYQDRRTLLLGTIFVTGSVFITFWKTGEPLLFYCALAI
Ga0209517_104435282	3300027854	Peatlands Soil	MSPALQVRRPAQGHEPLPPDVYLPLVDSLFKEGRTLLIGTIFVIG
Ga0209068_102141422	3300027894	Watersheds	MGSALRTNQPHEALPPEIYLPLVDSLFKEGRTLFAGTILGAGSIFITYWKTGEALLL
Ga0209624_102186543	3300027895	Forest Soil	MGSALRTNQPHEALPPEIYLPLVDSLFKEGRTLFAGTI
Ga0209698_102539861	3300027911	Watersheds	MGSALRTNQPHEALPPEIYLPLVDSLFKEGRTLFAGTILGAGSIFITYWKTGESLLLY
Ga0302221_100960563	3300028806	Palsa	MSLALRARQSGHDALPAEIYLPLVDSLFQDARTLITG
Ga0302228_105050502	3300028808	Palsa	MSSAFRTREPHETLPAEIYIPLVDSLFKEGTALFMGVIFVVGSVFCTYWKTGDVLILYWAIAITVA
Ga0247275_11780381	3300029817	Soil	MSSALRIRRPVQGNEALPPEIYLPLVDSLYEDGRTLFAGIILVSGSVFITYWRTGEILLL
Ga0302177_1000422410	3300030053	Palsa	MSLALRARQSGHDALPAEIYLPLVDSLFQDARTLITGSIFVT
Ga0302183_104314341	3300030509	Palsa	MSRTLRTRRSPPEHEALPPEIYLPLVDSLYKEGRTLLVGIVLVAGSIFVTYWKTGDILLFYCALAFVLVACA
Ga0311356_113421212	3300030617	Palsa	MSSAFRTREPHETLPAEIYIPLVDSLFKEGTALFMGV
Ga0311356_119877562	3300030617	Palsa	MSSAPRTRQPHEALPPEIYLPLVDSLFKEARTLLVGTVFIIGSILVTYWKTGDV
Ga0310039_103098562	3300030706	Peatlands Soil	MSRALRTRRPLQEREALPPEIYLSLVDSLYKDGRTLLVGIVLVAGAIFATYWKTGDILLF
Ga0265760_102992561	3300031090	Soil	MRPALRMRQPVQRLEALPAEIFLPMVDSLYKEGRTLLLGTISVIGSVLVTYWKTGEIFLLYCAVAIAVVGCAR
Ga0310686_1063121891	3300031708	Soil	MSSAPRTRQPHEALPPEIYLPLVDSLFKEARTLLVGTVFIIGSILVTYWKTGDVLIL
Ga0310686_1084580931	3300031708	Soil	MSSVLRTREAGHEALPPEIYLPLVDSLFKEGRTLLIGTIFVIGSVLITYWKTGEVLILYCAVAIFVVACA
Ga0310686_1111733233	3300031708	Soil	MGSALRTNQPHEALPPEIYLPLVDSLFKEGRTLFAGTILGAGSIFITTWPLCGD
Ga0306917_108785321	3300031719	Soil	MGSALRTNQPHEALPPEIYLPLVDSLFKEGRTLFAGTILGAGSVFITYWKTGEPLLLYCA
Ga0306917_114551131	3300031719	Soil	MSSALRTRQPHEALPPEIYLPLVDSLFKEARTLLVGTLFVIG
Ga0318520_104353432	3300031897	Soil	MGSALRTNQPHEALPPEIYLPLVDSLFKEGRTLFAGTILGAGSVFITYWKTGEP
Ga0335078_118534812	3300032805	Soil	MSSALRIRRPVQGHEALPPEIYLPLVDSLFKGGRTLLVGMFFVIGSVFITYWKTGEILIL
Ga0335080_122646311	3300032828	Soil	MRLLRRTRRKHRELPAEFYLPLVDSLYQDGRTLLVGTILVTASIFITYWKTSEIL
Ga0335081_109675462	3300032892	Soil	MSLALRVRRPVQEHEALPPDIYLPLVDSLYQDRRTLLLGTIFVTGSVFITYWKTGEILLLYCA
Ga0335073_111128771	3300033134	Soil	MSSALWTRQSPHQALPAEIYLPLVDSLFKEGRTLLIGTIFI
Ga0335077_105973981	3300033158	Soil	MSRAQQTRRPAPVREALPPEIYLPLVDSLYKEGRTLLTG

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F103822

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign