Metagenome / Metatranscriptome Family F103848

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F103848
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	65 residues
Representative Sequence	MRRKVLALALTAGALTIPASPVLADPDFGPGNSSKGPNDGGAKCHAPGHGTGPGSNDPVPGCKG
Number of Associated Samples	79
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	93.07 %
% of genes near scaffold ends (potentially truncated)	10.89 %
% of genes from short scaffolds (< 2000 bps)	58.42 %
Associated GOLD sequencing projects	70
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.23

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (78.218 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (25.743 % of family members)
Environment Ontology (ENVO)	Unclassified (30.693 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (47.525 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 15.22% β-sheet: 0.00% Coil/Unstructured: 84.78%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.23
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.23
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF13487	HD_5	2.97
PF03364	Polyketide_cyc	1.98
PF00127	Copper-bind	1.98
PF14019	DUF4235	1.98
PF01636	APH	1.98
PF13649	Methyltransf_25	1.98
PF01872	RibD_C	1.98
PF07883	Cupin_2	1.98
PF00441	Acyl-CoA_dh_1	1.98
PF01545	Cation_efflux	1.98
PF09990	DUF2231	0.99
PF13466	STAS_2	0.99
PF06724	DUF1206	0.99
PF00211	Guanylate_cyc	0.99
PF01323	DSBA	0.99
PF02142	MGS	0.99
PF05175	MTS	0.99
PF01850	PIN	0.99
PF08031	BBE	0.99
PF13400	Tad	0.99
PF05988	DUF899	0.99
PF01638	HxlR	0.99
PF13181	TPR_8	0.99
PF13271	DUF4062	0.99
PF01022	HTH_5	0.99
PF13450	NAD_binding_8	0.99
PF06723	MreB_Mbl	0.99
PF10635	DisA-linker	0.99
PF01610	DDE_Tnp_ISL3	0.99
PF12840	HTH_20	0.99
PF06739	SBBP	0.99
PF02518	HATPase_c	0.99
PF03880	DbpA	0.99
PF13676	TIR_2	0.99
PF02353	CMAS	0.99
PF07730	HisKA_3	0.99
PF07508	Recombinase	0.99
PF10604	Polyketide_cyc2	0.99
PF01513	NAD_kinase	0.99
PF01464	SLT	0.99
PF03061	4HBT	0.99
PF02770	Acyl-CoA_dh_M	0.99
PF02245	Pur_DNA_glyco	0.99
PF13458	Peripla_BP_6	0.99
PF13561	adh_short_C2	0.99
PF00149	Metallophos	0.99
PF01384	PHO4	0.99
PF00775	Dioxygenase_C	0.99
PF13489	Methyltransf_23	0.99
PF00583	Acetyltransf_1	0.99
PF14340	DUF4395	0.99
PF08281	Sigma70_r4_2	0.99
PF01035	DNA_binding_1	0.99
PF13376	OmdA	0.99
PF13263	PHP_C	0.99
PF00535	Glycos_transf_2	0.99
PF01966	HD	0.99
PF01402	RHH_1	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG0513	Superfamily II DNA and RNA helicase	Replication, recombination and repair [L]	2.97
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	2.97
COG0053	Divalent metal cation (Fe/Co/Zn/Cd) efflux pump	Inorganic ion transport and metabolism [P]	1.98
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	1.98
COG1230	Co/Zn/Cd efflux system component	Inorganic ion transport and metabolism [P]	1.98
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	1.98
COG3965	Predicted Co/Zn/Cd cation transporter, cation efflux family	Inorganic ion transport and metabolism [P]	1.98
COG0277	FAD/FMN-containing lactate dehydrogenase/glycolate oxidase	Energy production and conversion [C]	0.99
COG0306	Phosphate/sulfate permease	Inorganic ion transport and metabolism [P]	0.99
COG0350	DNA repair enzyme Ada (O6-methylguanine-DNA--protein-cysteine methyltransferase)	Replication, recombination and repair [L]	0.99
COG1077	Cell shape-determining ATPase MreB, actin-like superfamily	Cell cycle control, cell division, chromosome partitioning [D]	0.99
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.99
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.99
COG2094	3-methyladenine DNA glycosylase Mpg	Replication, recombination and repair [L]	0.99
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.99
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	0.99
COG2227	2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase	Coenzyme transport and metabolism [H]	0.99
COG2230	Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases	Lipid transport and metabolism [I]	0.99
COG3464	Transposase	Mobilome: prophages, transposons [X]	0.99
COG3485	Protocatechuate 3,4-dioxygenase beta subunit	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.99
COG3695	Alkylated DNA nucleotide flippase Atl1, participates in nucleotide excision repair, Ada-like DNA-binding domain	Transcription [K]	0.99
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	0.99
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	0.99
COG4312	Predicted dithiol-disulfide oxidoreductase, DUF899 family	General function prediction only [R]	0.99
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	0.99
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	78.22 %
Unclassified	root	N/A	21.78 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	78.22 %
Unclassified	root	N/A	21.78 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	78.22 %
Unclassified	root	N/A	21.78 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	61.39 %
Unclassified	root	N/A	21.78 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	60.40 %
Unclassified	root	N/A	21.78 %
Armatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes	0.99 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	24.75 %
Unclassified	root	N/A	21.78 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	11.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.99 %
Armatimonadia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Armatimonadia	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.78 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	17.82 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	3.96 %
Thermoleophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales	1.98 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	1.98 %
Armatimonadales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Armatimonadia → Armatimonadales	0.99 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.99 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.99 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.78 %
unclassified Solirubrobacterales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales	6.93 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3.96 %
Thermoleophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae	1.98 %
Armatimonadaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Armatimonadia → Armatimonadales → Armatimonadaceae	0.99 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.99 %
Intrasporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	0.99 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	0.99 %
Conexibacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae	0.99 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.78 %
Solirubrobacterales bacterium 70-9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium 70-9	3.96 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3.96 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1.98 %
unclassified Thermoleophilaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae	1.98 %
Armatimonas	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Armatimonadia → Armatimonadales → Armatimonadaceae → Armatimonas	0.99 %
Solirubrobacterales bacterium URHD0059	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	0.99 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	0.99 %
Janibacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Janibacter	0.99 %
Conexibacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter	0.99 %
Amycolatopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	0.99 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.78 %
Solirubrobacterales bacterium 70-9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium 70-9	3.96 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3.96 %
Thermoleophilaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	1.98 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1.98 %
unclassified Conexibacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → unclassified Conexibacter	0.99 %
Armatimonas rosea	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Armatimonadia → Armatimonadales → Armatimonadaceae → Armatimonas → Armatimonas rosea	0.99 %
Nocardia brasiliensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia brasiliensis	0.99 %
Janibacter limosus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Janibacter → Janibacter limosus	0.99 %
Solirubrobacterales bacterium URHD0059	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	0.99 %
Amycolatopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	0.99 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.78 %
Solirubrobacterales bacterium 70-9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium 70-9	3.96 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3.96 %
Thermoleophilaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	1.98 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1.98 %
Conexibacter sp. S30A1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → unclassified Conexibacter → Conexibacter sp. S30A1	0.99 %
Armatimonas rosea	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Armatimonadia → Armatimonadales → Armatimonadaceae → Armatimonas → Armatimonas rosea	0.99 %
Nocardia brasiliensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia brasiliensis	0.99 %
Janibacter limosus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Janibacter → Janibacter limosus	0.99 %
Solirubrobacterales bacterium URHD0059	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	0.99 %
Amycolatopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	0.99 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000033\|ICChiseqgaiiDRAFT_c2295191	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	796	Open in IMG/M
3300000858\|JGI10213J12805_10502077	All Organisms → cellular organisms → Bacteria	1041	Open in IMG/M
3300001333\|A21PFW6_1001450	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → unclassified Conexibacter → Conexibacter sp. S30A1	1724	Open in IMG/M
3300001977\|JGI24746J21847_1000002	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	25663	Open in IMG/M
3300002074\|JGI24748J21848_1000331	All Organisms → cellular organisms → Bacteria	5459	Open in IMG/M
3300002568\|C688J35102_120772158	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1536	Open in IMG/M
3300003324\|soilH2_10220320	All Organisms → cellular organisms → Bacteria	1436	Open in IMG/M
3300004157\|Ga0062590_101935639	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia brasiliensis	609	Open in IMG/M
3300005329\|Ga0070683_100028669	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	5034	Open in IMG/M
3300005341\|Ga0070691_10000006	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	66177	Open in IMG/M
3300005356\|Ga0070674_100000006	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	150063	Open in IMG/M
3300005439\|Ga0070711_100369434	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1157	Open in IMG/M
3300005441\|Ga0070700_100166610	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1522	Open in IMG/M
3300005543\|Ga0070672_100000007	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	104699	Open in IMG/M
3300005564\|Ga0070664_100022214	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	5233	Open in IMG/M
3300006169\|Ga0082029_1649614	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	520	Open in IMG/M
3300006640\|Ga0075527_10027088	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1514	Open in IMG/M
3300006852\|Ga0075433_10000130	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	38706	Open in IMG/M
3300009011\|Ga0105251_10555798	Not Available	541	Open in IMG/M
3300009148\|Ga0105243_11226508	Not Available	764	Open in IMG/M
3300009789\|Ga0126307_10172702	All Organisms → cellular organisms → Bacteria	1733	Open in IMG/M
3300009789\|Ga0126307_10325320	Not Available	1238	Open in IMG/M
3300009840\|Ga0126313_10131652	Not Available	1872	Open in IMG/M
3300009840\|Ga0126313_10374255	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1126	Open in IMG/M
3300009840\|Ga0126313_11398177	Not Available	580	Open in IMG/M
3300010036\|Ga0126305_10258330	Not Available	1122	Open in IMG/M
3300010036\|Ga0126305_10498600	Not Available	812	Open in IMG/M
3300010038\|Ga0126315_10035413	Not Available	2627	Open in IMG/M
3300010039\|Ga0126309_10009131	Not Available	4012	Open in IMG/M
3300010039\|Ga0126309_10042505	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	2134	Open in IMG/M
3300010040\|Ga0126308_10008439	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Armatimonadia → Armatimonadales → Armatimonadaceae → Armatimonas → Armatimonas rosea	5062	Open in IMG/M
3300010040\|Ga0126308_10440647	All Organisms → cellular organisms → Bacteria	874	Open in IMG/M
3300010041\|Ga0126312_10295398	All Organisms → cellular organisms → Bacteria	1142	Open in IMG/M
3300010041\|Ga0126312_10628990	Not Available	773	Open in IMG/M
3300010045\|Ga0126311_10098098	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2005	Open in IMG/M
3300010045\|Ga0126311_10129255	Not Available	1774	Open in IMG/M
3300010375\|Ga0105239_10148700	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	2614	Open in IMG/M
3300010375\|Ga0105239_10180096	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium 70-9	2364	Open in IMG/M
3300011332\|Ga0126317_11067749	All Organisms → cellular organisms → Bacteria	663	Open in IMG/M
3300011412\|Ga0137424_1000336	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3868	Open in IMG/M
3300012212\|Ga0150985_121278604	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	552	Open in IMG/M
3300012355\|Ga0137369_10133963	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	1986	Open in IMG/M
3300012901\|Ga0157288_10014722	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium 70-9	1388	Open in IMG/M
3300012902\|Ga0157291_10021937	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1285	Open in IMG/M
3300012903\|Ga0157289_10001628	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3163	Open in IMG/M
3300012912\|Ga0157306_10003024	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3059	Open in IMG/M
3300012913\|Ga0157298_10000004	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	155123	Open in IMG/M
3300012914\|Ga0157297_10000892	All Organisms → cellular organisms → Bacteria	5916	Open in IMG/M
3300012951\|Ga0164300_10000327	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	8581	Open in IMG/M
3300014254\|Ga0075312_1046143	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	821	Open in IMG/M
3300014265\|Ga0075314_1071988	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Janibacter → Janibacter limosus	710	Open in IMG/M
3300014265\|Ga0075314_1183061	Not Available	503	Open in IMG/M
3300014325\|Ga0163163_10387543	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium 70-9	1455	Open in IMG/M
3300014325\|Ga0163163_10816837	All Organisms → cellular organisms → Bacteria	996	Open in IMG/M
3300014487\|Ga0182000_10022735	All Organisms → cellular organisms → Bacteria	1675	Open in IMG/M
3300015373\|Ga0132257_100002517	All Organisms → cellular organisms → Bacteria	16583	Open in IMG/M
3300018071\|Ga0184618_10480575	Not Available	521	Open in IMG/M
3300018422\|Ga0190265_10000470	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	28786	Open in IMG/M
3300018422\|Ga0190265_10001382	All Organisms → cellular organisms → Bacteria	15939	Open in IMG/M
3300018422\|Ga0190265_10020148	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	5309	Open in IMG/M
3300018422\|Ga0190265_10911449	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1001	Open in IMG/M
3300018432\|Ga0190275_10032945	All Organisms → cellular organisms → Bacteria	4178	Open in IMG/M
3300018469\|Ga0190270_12298868	Not Available	600	Open in IMG/M
3300018476\|Ga0190274_10000095	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	63965	Open in IMG/M
3300018476\|Ga0190274_10054096	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2924	Open in IMG/M
3300018476\|Ga0190274_11439285	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	779	Open in IMG/M
3300018476\|Ga0190274_12466754	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium 70-9	617	Open in IMG/M
3300018920\|Ga0190273_10078656	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1774	Open in IMG/M
3300019255\|Ga0184643_1325306	Not Available	632	Open in IMG/M
3300019884\|Ga0193741_1009990	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	2483	Open in IMG/M
3300020005\|Ga0193697_1003315	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4111	Open in IMG/M
3300020016\|Ga0193696_1119808	Not Available	667	Open in IMG/M
3300020020\|Ga0193738_1114787	Not Available	757	Open in IMG/M
3300021363\|Ga0193699_10000027	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	135473	Open in IMG/M
3300022886\|Ga0247746_1034963	Not Available	1128	Open in IMG/M
3300023067\|Ga0247743_1018208	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	899	Open in IMG/M
3300023266\|Ga0247789_1000271	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	9611	Open in IMG/M
3300025223\|Ga0207672_1002301	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1175	Open in IMG/M
3300025854\|Ga0209176_10001288	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	4401	Open in IMG/M
3300025899\|Ga0207642_10003626	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	4900	Open in IMG/M
3300025916\|Ga0207663_10316157	All Organisms → cellular organisms → Bacteria	1172	Open in IMG/M
3300025940\|Ga0207691_10000140	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	66462	Open in IMG/M
3300025944\|Ga0207661_10020566	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	4936	Open in IMG/M
3300025945\|Ga0207679_10014232	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5225	Open in IMG/M
3300026075\|Ga0207708_10130430	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1965	Open in IMG/M
3300026535\|Ga0256867_10294974	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	575	Open in IMG/M
3300027636\|Ga0214469_1031198	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1733	Open in IMG/M
3300027636\|Ga0214469_1144788	Not Available	672	Open in IMG/M
3300027647\|Ga0214468_1141169	Not Available	605	Open in IMG/M
3300028784\|Ga0307282_10448153	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	626	Open in IMG/M
3300030006\|Ga0299907_10380648	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	1137	Open in IMG/M
3300030510\|Ga0268243_1010114	All Organisms → cellular organisms → Bacteria	1733	Open in IMG/M
3300031228\|Ga0299914_10000453	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	24700	Open in IMG/M
3300031228\|Ga0299914_10018236	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5624	Open in IMG/M
3300031228\|Ga0299914_10029526	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	4553	Open in IMG/M
3300031228\|Ga0299914_10182385	Not Available	1862	Open in IMG/M
3300031228\|Ga0299914_10598843	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	942	Open in IMG/M
3300031229\|Ga0299913_10868681	Not Available	873	Open in IMG/M
3300031824\|Ga0307413_11285004	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	640	Open in IMG/M
3300033417\|Ga0214471_10026487	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	4657	Open in IMG/M
3300034402\|Ga0334960_000611	All Organisms → cellular organisms → Bacteria	13574	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	81.19%
Host-Associated	Host-Associated	18.81%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	77.23%
Plants	Host-Associated → Plants	18.81%
Aquatic	Environmental → Aquatic	3.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	77.23%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.89%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.94%
Freshwater	Environmental → Aquatic → Freshwater	1.98%
Sediment	Environmental → Aquatic → Sediment	1.98%
Roots	Host-Associated → Plants → Roots	1.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	66.34%
Loam	Environmental → Terrestrial → Soil → Loam	7.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.94%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.95%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.96%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.97%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.98%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.98%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.99%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	45.54%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	9.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.94%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.95%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.96%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	2.97%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.97%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.98%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.98%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.98%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.99%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.99%
Desert	Environmental → Terrestrial → Soil → Unclassified → Desert	0.99%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	25.74%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	15.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	9.90%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.97%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	2.97%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	2.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.98%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	1.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.98%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	1.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.98%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.99%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.99%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.99%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.99%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.99%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.99%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.99%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.99%
Sub-Biocrust Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.99%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.99%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.99%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.99%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000858	Soil microbial communities from Great Prairies - Wisconsin Native Prairie soil	Environmental	Open in IMG/M
3300001333	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A21-PF)- 6 month illumina	Environmental	Open in IMG/M
3300001977	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5	Host-Associated	Open in IMG/M
3300002074	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S1	Host-Associated	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300006640	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost305-11B	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300009011	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300011332	Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300011412	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT620_2	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012901	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S119-311C-1	Environmental	Open in IMG/M
3300012902	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S169-409C-1	Environmental	Open in IMG/M
3300012903	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S134-311R-1	Environmental	Open in IMG/M
3300012912	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2	Environmental	Open in IMG/M
3300012913	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S043-104R-2	Environmental	Open in IMG/M
3300012914	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300014254	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailB_D2	Environmental	Open in IMG/M
3300014265	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailC_D2	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300019255	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019884	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2s2	Environmental	Open in IMG/M
3300020005	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m2	Environmental	Open in IMG/M
3300020016	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m1	Environmental	Open in IMG/M
3300020020	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a1	Environmental	Open in IMG/M
3300021363	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2	Environmental	Open in IMG/M
3300022886	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S079-202R-5	Environmental	Open in IMG/M
3300023067	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S221-509R-5	Environmental	Open in IMG/M
3300023266	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S220-509R-4	Environmental	Open in IMG/M
3300025223	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S2 (SPAdes)	Host-Associated	Open in IMG/M
3300025854	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost305-11B (SPAdes)	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026535	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (HiSeq)	Environmental	Open in IMG/M
3300027636	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT153D57 HiSeq	Environmental	Open in IMG/M
3300027647	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38 HiSeq	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300030510	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG (v2)	Environmental	Open in IMG/M
3300031228	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT153D57	Environmental	Open in IMG/M
3300031229	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38	Environmental	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300033417	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT142D155	Environmental	Open in IMG/M
3300034402	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 56SNS	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiDRAFT_22951911	3300000033	Soil	MRRKVLASILAVGALSISAAPAFAAPDFGPGNSSKGPNDGGSKCHAPSHGTGPDSQEPVPGCKG*
JGI10213J12805_105020772	3300000858	Soil	MRRKMLALALTAGALTIPVSPVLADPDFGPGNSSKGPHDGGAKCHAPGHGTGPGANEPVPGCKGK*
A21PFW6_10014505	3300001333	Permafrost	MRRKMLAVALTVGALTIPASSAFGDPDFGPGNSSKGPNDPGAKCHAPGHGTGPGANEPVPGCKG*
JGI24746J21847_10000022	3300001977	Corn, Switchgrass And Miscanthus Rhizosphere	MRRKILALALTAGALTIPASPVLAAPDFGPGNSSKGPNDGGSKCHAPGHGTGPGSNDPVPGCKG*
JGI24748J21848_10003316	3300002074	Corn, Switchgrass And Miscanthus Rhizosphere	MRRKMLALALTVGALTIPASSAFGNPDFGPGNSSKGPNDPGAKCHAPGHGTGPGANEPVPGCKG*
C688J35102_1207721582	3300002568	Soil	MRRKALAGVLATAALSLAAAPAFADPDFGPGNSSKGPNDGGAKCHVAGHGTGPGANEPVPGCKG*
soilH2_102203202	3300003324	Sugarcane Root And Bulk Soil	MRRKTLALILTAGALTIPASPVLADPDFGPGNSSKGPNDGGAKCHAPGHGTGPGANDPVPGCKG*
Ga0062590_1019356391	3300004157	Soil	MRRSRMTALALTIGALAIPATAAANPDFGPGNSSKGPNDPGAKCHAPGHGTGPGSNEP
Ga0070683_1000286692	3300005329	Corn Rhizosphere	MRRKMLALALTVGALAIPASSALGNPDFGPGNSEKGPNDPGAKCHAPGHGTGPGSNEPVPGCKG*
Ga0070691_1000000650	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MRRKMLAVALTAGALTIPVSAAFADPDFGPGNSSKGPNDPGAKCHAPGHGTGPGSNDPVPGCKG*
Ga0070674_10000000680	3300005356	Miscanthus Rhizosphere	MRRKMLALALTAGALTIPATPVLADPDFGPGNSSKGPNDPGAKCHAPGHGTGPWANEPVPGCKG*
Ga0070711_1003694342	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MRDQRVKEVPMRRKILALALTVGALTIPASQVLANPDFGPGNSEKGPNDPGAKCHAPGHGTGPGSNEPVPGCKG*
Ga0070700_1001666104	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MRRKMLALALTAGALTIPASPVLADPDFGPGNSSKGPHDGGAKCHAPGHGTGPGSNDPVPGCKG*
Ga0070672_10000000772	3300005543	Miscanthus Rhizosphere	MRRKVLALALTAGALTIPASPVLADPDFGPGNSSKGPNDGGAKCHAPGHGTGPGSNDPVPGCKG*
Ga0070664_1000222143	3300005564	Corn Rhizosphere	MRRKLLALALTAGALTIPVSSAVADPDFGPGNSNKGPNDGGSKCHAPGHGTGPGSNDPVPGCKG*
Ga0082029_16496142	3300006169	Termite Nest	MTRNKWIAGVLTVGALAIPAAPAFADPDFGPGNSSKGPNDGGAKCHTAGHGTGPGANDPVPGCKGK*
Ga0075527_100270883	3300006640	Arctic Peat Soil	MRRKMLALALTAGALTIPASSAGADPDFGPGNSSKGPNDGGAKCHAPGHGTGPGSNDPVPGCKGK*
Ga0075433_1000013021	3300006852	Populus Rhizosphere	MRRKMLALALTAGALTIPASSAFGDPDFGPGNSSKGPNDAGAKCHAPGHGTGPGSNEPVPGCKG*
Ga0105251_105557982	3300009011	Switchgrass Rhizosphere	AQRVRRFAMRRKMLALALTVGALTIPASSAFGNPDFGPGNSSKGPNDPGAKCHAPGHGTGPGANEPVPGCKG*
Ga0105243_112265081	3300009148	Miscanthus Rhizosphere	MLALALTAGALTIPATPVLADPDFGPGNSSKGPNDGGAKCHAPGHGTGPGSNEPVPGCKG
Ga0126307_101727023	3300009789	Serpentine Soil	MLALALTAGALTIPAAPVMADPDFGPGSSNKGPHDGGSKCHAPGHGTGPGSNDPVPGCKG
Ga0126307_103253201	3300009789	Serpentine Soil	MRRKLLALTLTAGALAIPASAVADPDFGPGNSSKGPNDGGAKCHTAGHGTGPGS
Ga0126313_101316523	3300009840	Serpentine Soil	MRRKAFASILAVAALSIPVAPALGDPDFGPGNSSKGPNDGGAKCHAPGHGTGPGANEPVPGCKG*
Ga0126313_103742552	3300009840	Serpentine Soil	MRRKILALALTVGALTIPASPVLADPDFGPGNSSKGPNDGGSKCHAPGHGTGPGSNEPVPGCKG*
Ga0126313_113981772	3300009840	Serpentine Soil	MRRKTFAAVLAAAALTVPAAPAFADPDFGPGNSDKGPNDGGAKCHAPAHGTGPGSNDPVPGCKGT*
Ga0126305_102583301	3300010036	Serpentine Soil	MRRKMLALALTVGALTIPASSASGDPDFGPGNSSKGPNDGGAKCHAPGHGTGPGSNDPVPGCKG*
Ga0126305_104986001	3300010036	Serpentine Soil	MRRKALAAILAVAAISISAAPAFADPDFGPGNSSKGPNDGGAKCHEPGHGTGPGANEPVPGCKGT*
Ga0126315_100354132	3300010038	Serpentine Soil	MRRKTFAAVLAAAALTIPAAPAFADPDFGPGNSDKGPNDGGAKCHAPAHGTGPGSNDPVPGCKGT*
Ga0126309_100091313	3300010039	Serpentine Soil	MTKRRKTLAGILSVAALSISAAPAFADPDFGPGNSSKGPNDAGAKCHAPGHGTGPGSNDPVPGCKGK*
Ga0126309_100425054	3300010039	Serpentine Soil	MRRRVFAAMLSVAALSIPASPALADPDFGPGNSSKGPHEGKCHEPGHGTGPGSNDPVPGCKG*
Ga0126308_100084395	3300010040	Serpentine Soil	MRRKTFAAVLAAAALTIPAAPAFADADFGPGNSDKGPNDGGAKCHAPAHGTGPGSNDPVPGCKGT*
Ga0126308_104406472	3300010040	Serpentine Soil	MRRKALAGVVVTAALSLAAAPAVADPDFGPGNSSKGPNDGGAKCHEPGHGTGPGANDPVPGCKG*
Ga0126312_102953983	3300010041	Serpentine Soil	MRRKVLASVLAAAALSITAAPAFADPDFGPGNSDKGPNDSGAKCHEAGHGTGPGANDPVPGCKGT*
Ga0126312_106289901	3300010041	Serpentine Soil	MTRQRKTLAAILSVAALSVSAAPAYADPDFGPGNSSKGPNDGGAKCHAPGHGTGPGANDPVPGCKGV*
Ga0126311_100980982	3300010045	Serpentine Soil	MRRKMLALALTVGALTIPAAPVMADPDFGPGNSSKGPNDGGAKCHEPGHGTGPGSNDPVPGCKGK*
Ga0126311_101292553	3300010045	Serpentine Soil	MRRKLLALALTLGALTIPASSAMADPDFGPGNSSKGPNDGGSKCHAPGHGTGPGSNDPVSGCKG*
Ga0105239_101487002	3300010375	Corn Rhizosphere	MRRKLFALSLIAGALTIPASSAVADPDFGPGNSSKGPNDGGAKCHAPGHGTGPGSNEPVSGCKG*
Ga0105239_101800962	3300010375	Corn Rhizosphere	MRRKMLALALTAGALTIPATPVLADPDFGPGNSSKGPNDPGAKCHAPGHGTGPGANEPVPGCKG*
Ga0126317_110677493	3300011332	Soil	MRRKMLAMALTVGALTIPASSAFGDPDFGPGNSSKGPNDPGAKCHAPGHGTGPGANEPVPGCKG*
Ga0137424_10003367	3300011412	Soil	MRKFAALVLAAALGVGALGTVAAADPDFGPGNSSKGPNDGGAKCHEPAHGTGPGPSDSVPGCKG*
Ga0150985_1212786041	3300012212	Avena Fatua Rhizosphere	MRRKMLAVALTAGALTIPASAPFADPDFGPGNSSKGPNDPGAKCHAPGHGTGPGSNDPVPGCKG*
Ga0137369_101339632	3300012355	Vadose Zone Soil	MRTRRRILALALTVGALAIPASAAADPDFGPGNSSKGPNDGGSKCHAPGHGTGPGSNDPVPGCKG*
Ga0157288_100147221	3300012901	Soil	MRRKMLALALTAGALTIPATPVLADPDFGPGNSSKGPNDPGAKCHAPGHGTGPGANEPVP
Ga0157291_100219373	3300012902	Soil	MLALALVAGALTIPAAPVLADPDFGPGNSSKGPNDGGSKCHAPGHGTGPGSNDPVPGCKG
Ga0157289_100016283	3300012903	Soil	MRRKMLALILTAGALTISASPVLADPDFGPGNSSKGPNDAGAKCHAPGHGTGPGSNDPVPGCKGT*
Ga0157306_100030242	3300012912	Soil	MRRKMLALALTAGALTIPASPTFADPDFGPGNSSKGPNDGGAKCHAPGHGTGPGANDPVPGCKGK*
Ga0157298_1000000483	3300012913	Soil	MRRKILALALTAGALTIPASPVLAGPDFGPGNSSKGPNDGGSKCHAPGHGTGPGSNDPVPGCKG*
Ga0157297_100008924	3300012914	Soil	MRRKMLALALTVGALTIPVSSAFGAPDFGPGNSSKGPNDGGAKCHAPGHGTGPGANDPVPGCKGT*
Ga0164300_100003275	3300012951	Soil	MRRKMLAVALTAGALTIPVSSAFGDPDFGPGNSSKGPNDPGAKCHTPGHGTGPGANEPVPGCKG*
Ga0075312_10461432	3300014254	Natural And Restored Wetlands	MRRKMLAVAFTAGALTIPVSPVLADPDFGPGNSSKGPNDGGAKCHAPGHGTGPGSNDPVPGCKGK*
Ga0075314_10719882	3300014265	Natural And Restored Wetlands	KSCLGALEARVARQEVLMRRKMLAIALTAGALTIPASSAVADPDFGPGNSNKGPNDGGAKCHAPGHGTGPGSNDPVPGCKGK*
Ga0075314_11830611	3300014265	Natural And Restored Wetlands	MRRKKLMALALTVGALTIPASAATAAPDFGPGNSSKGPNDGGAKCHAPGHGTGPGANDPVPGCKGK*
Ga0163163_103875432	3300014325	Switchgrass Rhizosphere	MRRKMLALALTAGALTIPATPVLADPDFGPGNSNKGPNDPGAKCHAPGHGTGPGANEPVPGCKG*
Ga0163163_108168372	3300014325	Switchgrass Rhizosphere	MDAISAKEVPMRRKMLALALTAGALTIPASPVLADPDFGPGNSSKGPNDAGAKSHAPGHGTGPGANDPVPGCKG*
Ga0182000_100227352	3300014487	Soil	MRKKMLALALTAGALTIPASPVLADPDFGPGNSSKGPNDGGAKCHAPGHGTGPGANDPVPGCKGK*
Ga0132257_1000025173	3300015373	Arabidopsis Rhizosphere	MLALALTAGALTIPATPVLADPDFGPGNSSKGPNDGGAKCHAPGHGTGPGSNEPVPGCKGT*
Ga0184618_104805751	3300018071	Groundwater Sediment	ADLRRHKEVSIMRRRRRMMALALSVGALAIPATAAANPDFGPGNSSKGPNDSGAKCHAPGHGTGPGSNDPVPGCKGT
Ga0190265_1000047011	3300018422	Soil	MRRRMLALALTAGALTIPASPVLADPDFGPGNSSKGPNDGGAKCHAPGHGTGPGSNDPVPGCKGK
Ga0190265_100013824	3300018422	Soil	MRKKMLALALTVGALTIPASPVLADPDFGPGNSSKGPHDGGSKCHAPGHGTGPGANDPVPGCKGK
Ga0190265_100201486	3300018422	Soil	MRRKMLAVALTAGALTIPASPALAAPDFGPGNSSKGPHDGGAKCHAPGHGTGPGANDPVPGCKGK
Ga0190265_109114491	3300018422	Soil	MRRKTLALALTVGALTIPASPVLADPDFGPGNSSKGPNDGGAKCHAPGHGTGPGSNDPVPGCKGK
Ga0190275_100329453	3300018432	Soil	VRKRLLVVTTCGLLAFSGGTAFADPDFGPGNSSKGPNDGGAKCHAPGHGTGPGANEPVPGCKGT
Ga0190270_122988681	3300018469	Soil	MRKRLLVVTTCGLLALSGGTAFADPDFGPGNSSKGPNDAGAKCHEPGHGTGPGANEPVPGCKGT
Ga0190274_1000009524	3300018476	Soil	MRKKTLALALVTGALTIPASSAVADPDFGPGNSSKGPNDGGAKCHAPGHGTGPGSNEPVPGCKGK
Ga0190274_100540962	3300018476	Soil	MRRKMLALALTAGALTIPATPVLADPDFGPGNSSKGPNDPGAKCHAPGHGTGPGANEPVPGCKG
Ga0190274_114392852	3300018476	Soil	MRRKLLAVALTAGALTIPASSAVADPDFGPGNSSKGPNDGGAKCHAPGHGTGPGSNDPVPGCKGK
Ga0190274_124667542	3300018476	Soil	MRRKMLALALIAGALTIPASPVLADPDFGPGNSSKGPNDPGAKCHAPGHGTGPGSNDPVPGCKG
Ga0190273_100786561	3300018920	Soil	MRKKMLALALTAGALTIPASPVLADPDFGPGNSSKGPNDGGSKCHAPGHGTGPGANDPVPGCKG
Ga0184643_13253061	3300019255	Groundwater Sediment	MRRRRRMMALALSVGALAIPATAAANPDFGPGNSSKGPNDSGAKCHAPGHGTGPGSNDPVPGCKGT
Ga0193741_10099903	3300019884	Soil	MRRRKMFALALTVGALAIPASSALGAPDFGPGNSSKGPNDGGSKCHAPGHGTGPGANDPVPGCKGT
Ga0193697_10033153	3300020005	Soil	MRKKMLALVLTVGALTIPVSSAFGDPDFGPGNSSKGPNDGGAKCHAPGHGTGPGSNDPVPGCKG
Ga0193696_11198082	3300020016	Soil	MRRKMLALALTVGALTIPASSAFGDPDFGPGNSSKGPNDGGAKCHAPGHGTGPGSNDPVPGCKG
Ga0193738_11147872	3300020020	Soil	MRKKMLALALTAGALTIPASPVLADPDFGPGNSSKGPNDGGAKCHAPGHGTGPGSNDPVPGCKGK
Ga0193699_1000002767	3300021363	Soil	MRRKMLALALTVGALTIPVSSAFGNPDFGPGNSSKGPNDSGAKCHAPGHGTGPGSNDPVPGCKG
Ga0247746_10349632	3300022886	Soil	MRRKMLALALTAGALTIPATPVLADPDFGPGNSSKGPNDGGAKCHAPGHGTGPGSNDPVPGCKGT
Ga0247743_10182081	3300023067	Soil	MRRKMLALALTAGALAIPAAQVSADPDFGPGNSSKGPNDGGAKCHAPGH
Ga0247789_10002718	3300023266	Soil	MRRKMLALALTAGALAIPAAQVSADPDFGPGNSSKGPNDGGAKCHAPGHGTGPGSNDPVPGCKG
Ga0207672_10023011	3300025223	Corn, Switchgrass And Miscanthus Rhizosphere	MRRKMLALALTVGALTIPASSAFGNPDFGPGNSSKGPNDPGAKCHAPGHGTGPGANEPVPGCKG
Ga0209176_100012885	3300025854	Arctic Peat Soil	MRRKMLALALTAGALTIPASSAGADPDFGPGNSSKGPNDGGAKCHAPGHGTGPGSNDPVPGCKGK
Ga0207642_100036263	3300025899	Miscanthus Rhizosphere	MRRKMLALALTAGALTIPATPVLADPDFGPGNSSKGPNDPGAKCHAPGHGTGPWANEPVPGCKG
Ga0207663_103161572	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MRRKILALALTVGALTIPASQVLANPDFGPGNSEKGPNDPGAKCHAPGHGTGPGSNEPVPGCKG
Ga0207691_1000014070	3300025940	Miscanthus Rhizosphere	MRRKVLALALTAGALTIPASPVLADPDFGPGNSSKGPNDGGAKCHAPGHGTGPGSNDPVPGCKG
Ga0207661_100205662	3300025944	Corn Rhizosphere	MRRKMLALALTVGALAIPASSALGNPDFGPGNSEKGPNDPGAKCHAPGHGTGPGSNEPVPGCKG
Ga0207679_100142322	3300025945	Corn Rhizosphere	MRRKLLALALTAGALTIPVSSAVADPDFGPGNSNKGPNDGGSKCHAPGHGTGPGSNDPVPGCKG
Ga0207708_101304305	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MRRKMLALALTAGALTIPASPVLADPDFGPGNSSKGPHDGGAKCHAPGHGTGPGSNDPVPGCKG
Ga0256867_102949742	3300026535	Soil	MRKRVLALALTIGALTIPASPVLADPDFGPGNSSKGPNDGGAKCHAPGHGTGPGANDPVPGCKGK
Ga0214469_10311982	3300027636	Soil	MRRKAVASFLAAAALSITAAPAMADPDFGPGNSSKGPNDGGSKCHAPNHGTGAGINEPVPGCKG
Ga0214469_11447881	3300027636	Soil	VTRTRRAITGMLAVFALSIGAPTALAAPDFGPGNSSKGPNDGGAKCHAPGHGTGPGANDPVPGCKGK
Ga0214468_11411691	3300027647	Soil	MRRKVFATILATAALSIPAAPAMADPDFGPGNSSKGPNDGGAKCHAPAHGTGPGSHDAVPGCKGK
Ga0307282_104481532	3300028784	Soil	MRRKMLALVLTVGALTIPASQVLANPDFGPGNSSKGPNDPGAKCHAPGHGTGPGSNEPVPGCKG
Ga0299907_103806481	3300030006	Soil	MRRKAVASFLAAAALSITAAPAMADPDFGPGNSSKGPNDGGSKCHAPNHGTGAGINEPVP
Ga0268243_10101142	3300030510	Soil	MRKKMLALALTAGALTIPASPVLADPDFGPGNSSKGPNDGGAKCHAPGHGTGPGANDPVPGCKGK
Ga0299914_1000045318	3300031228	Soil	MRRRMLALALVAGALTIPASPVLADPDFGPGNSSKGPHDGGAKCHAPGHGTGPGSNDPVPGCKGK
Ga0299914_1001823610	3300031228	Soil	MRRKTLALALTLGALTIPASSALAAPDFGPGNSSKGPHDGGAKCHAPGHGTGPGSNDPVPGCKGK
Ga0299914_100295261	3300031228	Soil	MRGKKLASSLAAGALLFSAGPAFAAPDFGPGNSSKGPNDGGAKCHAPGHGTGPGANDPVSGCKGK
Ga0299914_101823851	3300031228	Soil	MTRTRRAITGVLAVLALSIGAPTALAAPDFGPGNSSKGPNDGGAKCHAPGHGTGPGANDPVPGCKGK
Ga0299914_105988432	3300031228	Soil	MRRKMLAVALTAGALTIPASPAVAAPDFGPGNSSKGPHDGGAKCHAPGHGTGPGANDPVPGCKGK
Ga0299913_108686811	3300031229	Soil	MHKKILALALTAGALTIPASPVLAAPDFGPGNSSKGPHDGGSKCHAPGHGTGPGANDPVPGCKGK
Ga0307413_112850042	3300031824	Rhizosphere	MKGGASMSRRTLAGALAVAALSIPAAPALADPDFGPGNSSKGPNDGGAKCHEPAHGTGPGPSEPVPGCKG
Ga0214471_100264876	3300033417	Soil	MRRRMLALALTVGALTIPASPVLADPDFGPGNSSKGPNDGGAKCHAPGHGTGPGSNDPIPGCKGK
Ga0334960_000611_3797_3991	3300034402	Sub-Biocrust Soil	MRRKILALALTAGALTIPASPVLAAPDFGPGNSSKGPNDGGSKCHAPGHGTGPGANDPVPGCKG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F103848

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences