Metagenome / Metatranscriptome Family F103866

Basic Information
Family ID	F103866
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	66 residues
Representative Sequence	KELGEYLGDRINNPLAVILASAQLLEMRQRSDATSEAAQRIGAAVSKINEVVREIAIRSGEVPRV
Number of Associated Samples	91
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.68

Most Common Taxonomy
Group	Unclassified (100.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (16.832 % of family members)
Environment Ontology (ENVO)	Unclassified (27.723 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.495 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 55.91% β-sheet: 0.00% Coil/Unstructured: 44.09%
Feature Viewer

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Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF00441	Acyl-CoA_dh_1	45.54
PF00512	HisKA	16.83
PF02771	Acyl-CoA_dh_N	11.88
PF02770	Acyl-CoA_dh_M	4.95
PF13343	SBP_bac_6	2.97
PF06508	QueC	1.98
PF12911	OppC_N	0.99
PF02900	LigB	0.99
PF13701	DDE_Tnp_1_4	0.99
PF02592	Vut_1	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	62.38
COG0037	tRNA(Ile)-lysidine synthase TilS/MesJ	Translation, ribosomal structure and biogenesis [J]	1.98
COG0137	Argininosuccinate synthase	Amino acid transport and metabolism [E]	1.98
COG0171	NH3-dependent NAD+ synthetase	Coenzyme transport and metabolism [H]	1.98
COG0301	Adenylyl- and sulfurtransferase ThiI (thiamine and tRNA 4-thiouridine biosynthesis)	Translation, ribosomal structure and biogenesis [J]	1.98
COG0482	tRNA U34 2-thiouridine synthase MnmA/TrmU, contains the PP-loop ATPase domain	Translation, ribosomal structure and biogenesis [J]	1.98
COG0519	GMP synthase, PP-ATPase domain/subunit	Nucleotide transport and metabolism [F]	1.98
COG0603	7-cyano-7-deazaguanine synthase (queuosine biosynthesis)	Translation, ribosomal structure and biogenesis [J]	1.98
COG0780	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF, C-terminal domain, T-fold superfamily	Translation, ribosomal structure and biogenesis [J]	1.98
COG1606	ATP-utilizing enzyme, PP-loop superfamily	General function prediction only [R]	1.98
COG1738	Queuosine precursor transporter YhhQ, DUF165 family	Translation, ribosomal structure and biogenesis [J]	0.99

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	72.28%
Host-Associated	Host-Associated	27.72%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	71.29%
Plants	Host-Associated → Plants	27.72%
Aquatic	Environmental → Aquatic	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	69.31%
Rhizosphere	Host-Associated → Plants → Rhizosphere	20.79%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.93%
Freshwater	Environmental → Aquatic → Freshwater	0.99%
Peat	Environmental → Terrestrial → Peat	0.99%
Floodplain	Environmental → Terrestrial → Floodplain	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	56.44%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	17.82%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.94%
Loam	Environmental → Terrestrial → Soil → Loam	5.94%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.95%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.98%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.99%
Sand	Environmental → Terrestrial → Soil → Sand	0.99%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.99%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.99%

Habitat	Taxonomy	Distribution
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	23.76%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	17.82%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	6.93%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.94%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.95%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.97%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.97%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.98%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.99%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.99%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.99%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.99%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	16.83%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	10.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	6.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	6.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	5.94%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.96%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.96%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.97%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.97%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	2.97%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.97%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.98%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.99%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.99%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.99%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.99%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.99%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.99%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.99%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.99%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.99%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.99%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.99%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.99%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.99%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002912	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm	Environmental	Open in IMG/M
3300003319	Sugarcane bulk soil Sample L2	Environmental	Open in IMG/M
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005890	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_104	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300006580	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300009823	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_40_50	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300014254	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailB_D2	Environmental	Open in IMG/M
3300014265	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailC_D2	Environmental	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300018089	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MG	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026032	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailA_D1 (SPAdes)	Environmental	Open in IMG/M
3300026297	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026307	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123 (SPAdes)	Environmental	Open in IMG/M
3300026325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental	Open in IMG/M
3300027650	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67 HiSeq	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032179	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300034177	Sediment microbial communities from East River floodplain, Colorado, United States - 17_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25386J43895_100129984	3300002912	Grasslands Soil	INNPLAVIMASAQLLEMRAPSNATSEAAERITTAVSKINAVVREIASKSGEMA*
soilL2_100850333	3300003319	Sugarcane Root And Bulk Soil	QAAQLAVLRELGEYLGDRINNPLAVILASAQLLEMKAPSDATSEAAERIAGAVKKINAVV
Ga0066398_102046041	3300004268	Tropical Forest Soil	AETQRTVEAAELALLKELGEYLGDRINNPLAVILASAQLLEMKDRNSATSEAAQRIGAAVARINAVVREIAIRSGEAPVS*
Ga0063356_1027626811	3300004463	Arabidopsis Thaliana Rhizosphere	ELGEYLGDRINNPLAVILASAQLLQMKERSSATSEAAARISEAVSRINGVVREIAIRSGEMPRA*
Ga0062591_1007075262	3300004643	Soil	NPLAVILASAQLLEMKAPSDATSEATERIAGAVEKINAVVREIARRSGEAD*
Ga0066672_101390021	3300005167	Soil	ERHAFAQNTERTVETAQLALLKELGEYLGDRINNPLAVIMASAQLLEMRAPGNATTEAAERITIAVSKINAVVREIASKSGERGVR*
Ga0066673_107304251	3300005175	Soil	LTERADRKVEAAQLALLKELGEFLGDRINNPLAVIMASAQLLEMRAPSDATSQAAERVTAAVSKITAVVREIAAKSGDELIS*
Ga0066679_108779571	3300005176	Soil	VETAQLALLKELGEYLGDRINNPLAVIMASAQLLEMRAPGNATTEAAERITIAVSKINAVVREIASKSGERGVR*
Ga0066679_108924291	3300005176	Soil	VETAQLALLKELGEYLGDRINNPLAVIMASAQLLEMRAPGNATTEAAERITIAVSKINAVVREIAAKSGERGVS*
Ga0066675_103375692	3300005187	Soil	LALLKELGEYLGDRINNPLAVILASAQLLEMKERSNATTEAAQRIGAAVGKINEVVREIAIRSGETPIV*
Ga0066388_1082566161	3300005332	Tropical Forest Soil	RSMAEAQRTVKSAELQLLKELGEYLGDRINNPLAVILGSAQLLEMRDHSQAASEAAERIGAAVSKINDVVREIASRSGVALR*
Ga0070691_108650291	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	LGEYLGDRINNPLAVILASAQLLQMKERSSATSEAAQRIGEAVSRINGVVREIAIRSGELPRA*
Ga0066686_106649832	3300005446	Soil	LAVIMASAQLLEMRAPSSATSEAAERITTAVSKINAVVREIASKSGEMA*
Ga0066686_110647462	3300005446	Soil	GDRINNPLAVIMASAQLLEMRAPGTATTEAAERITAAVSKINAVVREIAEKSGERVV*
Ga0066687_102349041	3300005454	Soil	EAAQLALLKELGEFLGDRINNPLAVIMASAQLLEMRAPGSATTEAAERITAAVSKINAVVREIAEKSGERVV*
Ga0068867_1013080881	3300005459	Miscanthus Rhizosphere	EYLGDRINNPLAVILASAQLLQMKERSSATSEAAQRIGEAVSRINGVVREIAIRSGELPRA*
Ga0073909_101939982	3300005526	Surface Soil	SADAQRTVQAAELALLRELGEYLGDRINNPLAVILASAQLLEMKEHNAATSEAAERIGTAVAKINAVVREIAVRSGEAPVE*
Ga0066661_105929882	3300005554	Soil	GEYLGDRINNPLAVIMASAQLLEMRAPGNATTEAAERITIAVSKINAVVREIASKSGERGVR*
Ga0066692_109223452	3300005555	Soil	DRKVEAAQLALLKELGEFLGDRINNPLAVIMASAQLLEMRAPGSATTEAAERITAAVSKINAVVREIAEKSGERVI*
Ga0066698_102410181	3300005558	Soil	RTVETAQLALLKELGEYLGDRINNPLAVILASAQLLEMKERSHATSEAAQRIGAAVSKINDVVREIAIRSGEQPRG*
Ga0066700_105705071	3300005559	Soil	AQNTERTVETAQLALLKELGEYLGDRINNPLAVIMASAQLLEMRAPGNATTEAAERITIAVSKINAVVREIASKSGERGVR*
Ga0070664_1023990771	3300005564	Corn Rhizosphere	LLKELGEYLGDRINNPLAVILASAQLLQMKERSSATSEAAQRIGEAVSRINTVVREIAIRSGEIPRA*
Ga0066703_104463101	3300005568	Soil	AQNTERTVETAQLALLKELGEYLGDRINNPLAVIMASAQLLEMRAPGNATTEAAERITIAVSKINAVVREIAAKSGERGVS*
Ga0066706_113534062	3300005598	Soil	LALLKELGEYLGDRINNPLAVILASAQLLEMKERSNATHEAAQRIGAAVSKINDVVREIAIRSGEQPRG*
Ga0068859_1007877151	3300005617	Switchgrass Rhizosphere	QRTVQAAELALLRELGEYLGDRINNPLAVILASAQLLEMKEHNAATSEAAQRIGSAVAKINAVVREIAVRSGEAPIE*
Ga0066905_1008913581	3300005713	Tropical Forest Soil	QLALLKQLGEFLGDRINNPLAVIMASAQLLEMRAPSDATSEAAERITAAVSKINAVVREIASKSGEV*
Ga0075285_10533522	3300005890	Rice Paddy Soil	QAAELALLKELGEYLGDRINNPLAVILGSAQLLEMKDRSHATSEAAQRIAAAVSKINEVVREIASRSGETPHR*
Ga0075417_100688163	3300006049	Populus Rhizosphere	LKELGEFLGDRINNPLAVIMASAQLLEMRAPGNATSEAAERITAAVSKINAVVREIAVRSGERAS*
Ga0075417_106872031	3300006049	Populus Rhizosphere	RINNPLAVILASAQLLQLKERSTATSEAAERIGEAVSRINQVVREIAIRSGEIPRV*
Ga0082029_11220161	3300006169	Termite Nest	LGDRITNPLAVILASAPLLEMKDRNSATSEAAQRIGAAVAKINAVVREIAIRSGEAPVS*
Ga0074049_126805941	3300006580	Soil	VKSAELQLLKELGEYLGDRINNPLAVILGSAQLLEMRDHSQAASEAAERIGAAVSKINDVVREIATRSGVALR*
Ga0079220_120313231	3300006806	Agricultural Soil	VIMASAQLLEMRAPSDATSEAAERITAAVSKINAVVREIASKSGDVVR*
Ga0075425_1018713792	3300006854	Populus Rhizosphere	VEAAQLALLKELGEFLGDRIHNPLAVIMASAQLLEMRAPSNATSEAAERITAAVSKINAVVREIASKSGERV*
Ga0075434_1004904391	3300006871	Populus Rhizosphere	AVILASAQLLEMKERSHATSEAAQRIGAAVSKINDVVREIALRSGETPRT*
Ga0075419_100332285	3300006969	Populus Rhizosphere	EYLGDRINNPLAVILASAQLLEMKAPSDATTEAAERIAGAVKKINTVVREIARRSGEAD*
Ga0066710_1028143211	3300009012	Grasslands Soil	TVETAQLALLKELGEYLGDRINNPLAVIMASAQLLEMRAPGNATTEAAERITIAVSKINAVVREIAAKSGERGVS
Ga0066710_1043688512	3300009012	Grasslands Soil	LGEYLGDRINNPLAVIMASAQLLEMRAPGNATTEAAERITIAVSKINAVVREIASKSGERGVR
Ga0111539_111775331	3300009094	Populus Rhizosphere	RINNPLAVILASAQLLEMKEHNAATSEAAERIGTAVAKINAVVREIAVRSGEAPVE*
Ga0111539_118119882	3300009094	Populus Rhizosphere	LASAQLLEMKERSHATSEAAQRIGAAVSKINDVVREIALRSGETPRT*
Ga0066709_1040073631	3300009137	Grasslands Soil	LGEYLGDRINNPLAVIMASAQLLEMRAPGNATTEAAERITIAVSKINAVVREIASKSGERGVR*
Ga0066709_1043959451	3300009137	Grasslands Soil	TVETAQLALLKELGEYLGDRINNPLAVIMASAQLLEMRAPGNATTEAAERITIAVSKINAVVREIAAKSGERGVS*
Ga0105092_101496081	3300009157	Freshwater Sediment	SAELALLKELGEYLGDRINNPLAVILASAQLLQIKERSDATSAAAQRIGEAVSRINGVVREIAIRSGEVPRV*
Ga0075423_109658171	3300009162	Populus Rhizosphere	LKELGEYLGDRINNPLAVILASAQLLEMKERSHATSEAAQRIGAAVSKINDVVREIALRSGETPRT*
Ga0075423_110011871	3300009162	Populus Rhizosphere	RINNPLAVILASAQLLEMKERSHATSEAAQRIGAAVSKINDVVREIALRSGETPRT*
Ga0105241_105757981	3300009174	Corn Rhizosphere	EAQRTVKSAELQLLKELGEYLGDRINNPLAVILGSAQLLEMRDHSQAASEAAERIGAAVSKINDVVREIASRSGVDLR*
Ga0126374_118088012	3300009792	Tropical Forest Soil	ALLKQLGEFLGDRINNPLAVIMASAQLLEMRAPSDATSEAAERITAAVSKINAVVREIALKSGEV*
Ga0105078_10561711	3300009823	Groundwater Sand	NPLAVILASAQLLEMKAPGDATTEAAERIAGAVKKINAVVREIARRSGEAD*
Ga0126384_108802871	3300010046	Tropical Forest Soil	RKVEAAELALLKQLGEFLGDRINNPLAVIMASAQLLEMRAPSDATSEAAERITAAVSKINAVVREIALKSGEV*
Ga0134071_105919391	3300010336	Grasslands Soil	AQLALLKELGEFLGDRINNPLAIIMASTQLLEMRAPGNATSEAAERITAAVSKINAVVREIAVRSGEAPR*
Ga0126370_100847523	3300010358	Tropical Forest Soil	RINNPLAVIMASAQLLEMRAPSDATSEAAQRITAAVSKINAVVREIALKSGEV*
Ga0126372_117145122	3300010360	Tropical Forest Soil	EAAELALLKQLGEFLGDRINNPLAVIMASAQLLEMRAPSDATSEAAERITAAVSKINAVVREIASKSGEV*
Ga0134125_128791492	3300010371	Terrestrial Soil	LAVILASAQLLEMKEHNAATSEAAERIGTAVAKINAVVREIAVRSGEAPVE*
Ga0134124_131603431	3300010397	Terrestrial Soil	YLGDRINNPLAVILASAQLLQMKERSSATSEAAQRIGEAVSRINTVVREIAIRSGEIPRA
Ga0134123_104725551	3300010403	Terrestrial Soil	ELALLKELGEYLGDRINNPLAVILASAQLLQMKERSSATSEAAQRIGEAVSRINGVVREIAIRSGELPRA*
Ga0137362_106727541	3300012205	Vadose Zone Soil	HERQALAERTDRKVEAAQLALLKELGEFLGDRINNPLAVIMASAQLLEMRAPSNATSEAAERITTAVSKINAVVREIASKSGEMA*
Ga0137358_108472071	3300012582	Vadose Zone Soil	EYLGDRINNPLAVIMASAQLLEMRAPGNATTEAAERITMAVSKINAVVREIAAKSGERGVS*
Ga0137410_100427435	3300012944	Vadose Zone Soil	DRINNPLAVIMASAQLLEMRAPGNATTEAAERITIAVSKINAVVREIAAKSGERGVS*
Ga0134078_100534432	3300014157	Grasslands Soil	PLAVIMASAQPLEMRAPGSATTEDAERITAAVSKINAVVREIAEKSSERVI*
Ga0075312_10065861	3300014254	Natural And Restored Wetlands	NPLAVILASAQLLEMKAPGDATTEAAERIAGAVKKINAVVREIARRSGEVD*
Ga0075314_10338232	3300014265	Natural And Restored Wetlands	LGEYLGDRINNPLAVILASAQLLEMKAPGDATTEAAERIAGAVKKINAVVREIARRSGEVD*
Ga0137420_12520711	3300015054	Vadose Zone Soil	LGEYLGEYLGDRINNPLAVIMASAQLLEMRAPGNATTEAAERITIAVSKINAVVREIAAKSGERGVS*
Ga0134073_100356632	3300015356	Grasslands Soil	QLALLKELGEFLGDRINNPLAVIMASAQLLEMRAPGNATTEAAERITAAVSKINAVVREIAEKSGERVV*
Ga0132255_1022346892	3300015374	Arabidopsis Rhizosphere	LGDRINNPLAVILASAQLLEMKEHNAATSEAAERIGTAVAKINAVVREIAVRSGEAPVE*
Ga0132255_1037737262	3300015374	Arabidopsis Rhizosphere	LGDRINNPLAVIMASAQLLEMRAPSDATSEAAERITAAVSKINAVVREIALKSGEV*
Ga0134112_101777431	3300017656	Grasslands Soil	VEAQRTVQAAELALLRELGEYLGDRINNPLAVILASAQLLEMKERSHATSEAAHRIGAAVSKINEVVREIAIRSGETPRA
Ga0187774_111061871	3300018089	Tropical Peatland	KELGEYLGDRINNPLAVILASAQLLEMRQRSDATSEAAQRIGAAVSKINEVVREIAIRSGEVPRV
Ga0066667_100156956	3300018433	Grasslands Soil	KELGEYLGDRINNPLAVIMASAQLLEMRAPGNATTEAAERITIAVSKINAVVREIASKSGERGVR
Ga0207642_107424882	3300025899	Miscanthus Rhizosphere	LLKELGEYLGDRINNPLAVILGSAQLLEMRDHSQAASEAAERIGAAVSKINYVVREIATRSGVALR
Ga0207662_102667791	3300025918	Switchgrass Rhizosphere	QAAELALLRELGEYLGDRINNPLAVILASAQLLEMKEHNAATSEAAQRIGSAVAKINAVVREIAVRSGEAPVE
Ga0207706_106489911	3300025933	Corn Rhizosphere	RINNPLAVILASAQLLQMKERSSATSEAAQRIGEAVSRINGVVREIAIRSGELPRA
Ga0207651_116516611	3300025960	Switchgrass Rhizosphere	TEAQRTVKSAELQLLKELGEYLGDRINNPLAVILGSAQLLEMRDHSQAASEAAERIGAAVSKINDVVREIATRSGVALR
Ga0208419_10297332	3300026032	Natural And Restored Wetlands	ALSLNVDRDVQAAQLAVLRELGEYLGDRINNPLAVILASAQLLEMKAPGDATTEAAERIAGAVKKINAVVREIARRSGEVD
Ga0209237_10231021	3300026297	Grasslands Soil	GDRINNPLAVIMASAQLLEMRAPSNATSEAAERITTAVSKINAVVREIASKSGEMA
Ga0209469_10866311	3300026307	Soil	KELGEFLGDRINNPLAVIMASAQLLEMRAPGSATTEAAERITAAVSKINAVVREIAEKSGERVI
Ga0209152_104789252	3300026325	Soil	RTVETAQLALLKELGEYLGDRINNPLAVIMASAQLLEMRAPGNATTEAAERITIAVSKINAVVREIASKSGERGVR
Ga0209056_106524781	3300026538	Soil	VQAAELALLKELGEYLGDRINNPLAVILASAQLLEMKERSHATSEAAHRIGAAVSKINEVVREIAIRSGETPRA
Ga0209161_103959742	3300026548	Soil	QRRVQAAELALLKELGEYLGDRINNPLAVILASAQLLEMKEHSHATSEAAQRIGAAVSKINDVVREIAIRSGEQPRG
Ga0256866_11751451	3300027650	Soil	ELGEYLGDRINNPLAVILASAQLLQMKERSNATSEAAQRIGEAVSRINGVVREIAIRSGEIPRV
Ga0209073_105186301	3300027765	Agricultural Soil	VIMASAQLLEMRAPSDATSEAAERITAAVSKINAVVREIASKSGDVVR
Ga0209177_102301491	3300027775	Agricultural Soil	DRINNPLAVILASAQLLQMRERSNATSEAADRIGEAVSRINQVVREIAIRSGEVPRA
Ga0209814_105004352	3300027873	Populus Rhizosphere	YLGDRINNPLAVILASAQLLQLKERSTATSEAAERIGEAVSRINQVVREIAIRSGEIPRV
Ga0209382_113761772	3300027909	Populus Rhizosphere	ELGEYLGDRINNPLAVILASAQLLEMKAPSDATTEAADRIAGAVKKINAVVREIARRSGEVD
Ga0268264_126818212	3300028381	Switchgrass Rhizosphere	LGEYLGDRINNPLAVILGSAQLLEMRDHSQAASEAAERIGAAVSKINDVVREIATRSGVALR
Ga0247822_106023152	3300028592	Soil	GDRINNPLAVILGSAQLLEMRDHSQAASEAAERIGAAVSKINDVVREIASRSGVALR
Ga0247825_109076832	3300028812	Soil	AELALLRELGEYLGDRINNPLAVILASAQLLQMKERSSATSEAAARIGEAVSRINGVVREIAIRSGEMPRA
Ga0310886_103659122	3300031562	Soil	GDRINNPLAVILASAQLLQMKERSSATSEAAQRIGEAVSRINGVVREIAIRSGELPRA
Ga0307468_1014121041	3300031740	Hardwood Forest Soil	LGEYLGDRINNPLAVILGSAQLLEMRDHSQAASEAADRIGAAVSKINDVVREIASRSGVALR
Ga0307413_118262162	3300031824	Rhizosphere	DRINNPLAVILASAQLLEMKERSIATSEAAERIGAAVSKINEVVREIAIRSGEQPRP
Ga0310892_104270661	3300031858	Soil	QRTVKSAELQLLKELGEYLGDRINNPLAVILGSAQLLEMRDHSQAASEAAERIGAAVSKINDVVREIASRSGVDLR
Ga0307407_104532632	3300031903	Rhizosphere	YLGDRINNPLAVILASAQLLEMKAPSDATSEAAERIAGAVKKINAVVREIARRSGEVD
Ga0310884_101543271	3300031944	Soil	EYLGDRINNPLAVILGSAQLLEMRDHSQAASEAAERIGAAVSKINDVVREIASRSGVDLR
Ga0307416_1014288751	3300032002	Rhizosphere	VQAAQLAVLRELGEYLGDRINNPLAVILASAQLLEMKAPSDATSEAAERIAGAVKKINAVVREIARRSGEVD
Ga0307411_102344742	3300032005	Rhizosphere	EAQRTVQSAELALLKELGEYLGDRINNPLAVILASAQLLEMKERSIATSEAAERIGAAVSKINEVVREIAIRSGEQPRP
Ga0307411_111122311	3300032005	Rhizosphere	LGDRINNPLAVILASAQLLEMKAPGDATTEAAEHIAGAVKKINAVVREIARRSGEAD
Ga0307411_115351922	3300032005	Rhizosphere	LGEYLGDRINNPLAVILASAQLLQMKERSTATSEAAQRISEAVSRINGVVREIAIRSGEVPRS
Ga0310889_102198222	3300032179	Soil	NPLAVILGSAQLLEMRDHSQAASEAAERIGAAVSKINDVVREIASRSGVALR
Ga0307471_1029795921	3300032180	Hardwood Forest Soil	GDRINNPLAVILGSAQLLEMRDHSQAASEAADRIGAAVSKINDVVREIASRSGVALR
Ga0335084_106162212	3300033004	Soil	VKSAELQLLKELGEYLGDRINNPLAVILGSAQLLEMRDHSQAASEAAERIGAAVSKINDVVREIASRSGVELR
Ga0326726_112644562	3300033433	Peat Soil	RINNPLAVILASAQLLQMRERSTATSEAADRIGEAVSRINQVVREIAIRSGEVPRV
Ga0247829_117074931	3300033550	Soil	VQGAELALLKELGEYLGDRINNPLAVILASAQLLQIKERSTATSEAADRIGEAVSRINQVVREIAIRSGEIPRV
Ga0364932_0073974_1035_1280	3300034177	Sediment	MAEAQRTVQGAELALLKELGEYLGDRINNPLAVILASAQLLQMKERSTATNEAADRIGEAVSRINKVVREIAVRSGEAPRI

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.68
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.68
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F103866

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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