Metagenome / Metatranscriptome Family F103871

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F103871
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	43 residues
Representative Sequence	MVQIPGLILDYSKKKPPAKAVVYQTYDALAGFIKRPQVALTRR
Number of Associated Samples	79
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	73.27 %
% of genes near scaffold ends (potentially truncated)	46.53 %
% of genes from short scaffolds (< 2000 bps)	95.05 %
Associated GOLD sequencing projects	78
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.23

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (50.495 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh (21.782 % of family members)
Environment Ontology (ENVO)	Unclassified (64.356 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (99.010 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 42.25% β-sheet: 0.00% Coil/Unstructured: 57.75%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.23
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.23
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF01053	Cys_Met_Meta_PP	31.68
PF02574	S-methyl_trans	19.80
PF02955	GSH-S_ATP	15.84
PF00903	Glyoxalase	7.92
PF12681	Glyoxalase_2	4.95
PF00132	Hexapep	2.97
PF01641	SelR	1.98
PF00487	FA_desaturase	0.99
PF03190	Thioredox_DsbH	0.99
PF05050	Methyltransf_21	0.99
PF00581	Rhodanese	0.99
PF14489	QueF	0.99
PF14129	DUF4296	0.99
PF08443	RimK	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG0075	Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucG	Amino acid transport and metabolism [E]	31.68
COG0156	7-keto-8-aminopelargonate synthetase or related enzyme	Coenzyme transport and metabolism [H]	31.68
COG0189	Glutathione synthase, LysX or RimK-type ligase, ATP-grasp superfamily	Translation, ribosomal structure and biogenesis [J]	31.68
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	31.68
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	31.68
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	31.68
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	31.68
COG1921	Seryl-tRNA(Sec) selenium transferase	Translation, ribosomal structure and biogenesis [J]	31.68
COG1982	Arginine/lysine/ornithine decarboxylase	Amino acid transport and metabolism [E]	31.68
COG2008	Threonine aldolase	Amino acid transport and metabolism [E]	31.68
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	31.68
COG4100	Cystathionine beta-lyase family protein involved in aluminum resistance	Inorganic ion transport and metabolism [P]	31.68
COG0646	Methionine synthase I (cobalamin-dependent), methyltransferase domain	Amino acid transport and metabolism [E]	19.80
COG2040	Homocysteine/selenocysteine methylase (S-methylmethionine-dependent)	Amino acid transport and metabolism [E]	19.80
COG0229	Peptide methionine sulfoxide reductase MsrB	Posttranslational modification, protein turnover, chaperones [O]	1.98
COG1331	Uncharacterized conserved protein YyaL, SSP411 family, contains thoiredoxin and six-hairpin glycosidase-like domains	General function prediction only [R]	0.99
COG1398	Fatty-acid desaturase	Lipid transport and metabolism [I]	0.99
COG3239	Fatty acid desaturase	Lipid transport and metabolism [I]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	50.50 %
Unclassified	root	N/A	49.50 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	50.50 %
Unclassified	root	N/A	49.50 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	50.50 %
Unclassified	root	N/A	49.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.50 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	47.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.50 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	37.62 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.50 %
Pelagibacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	24.75 %
Thiotrichales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.50 %
Pelagibacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae	24.75 %
Piscirickettsiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Piscirickettsiaceae	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.50 %
Candidatus Pelagibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	23.76 %
unclassified Pelagibacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae	0.99 %
Methylophaga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Piscirickettsiaceae → Methylophaga	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.50 %
Candidatus Pelagibacter ubique	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	7.92 %
Methylophaga thiooxydans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Piscirickettsiaceae → Methylophaga → Methylophaga thiooxydans	0.99 %
Pelagibacteraceae bacterium BACL5 MAG-120820-bin39	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium BACL5 MAG-120820-bin39	0.99 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001349\|JGI20160J14292_10037526	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Piscirickettsiaceae → Methylophaga → Methylophaga thiooxydans	2374	Open in IMG/M
3300001945\|GOS2241_1010970	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1488	Open in IMG/M
3300001949\|GOS2238_1022913	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1518	Open in IMG/M
3300001955\|GOS2237_1021956	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	3847	Open in IMG/M
3300001957\|GOS2250_1026861	All Organisms → cellular organisms → Bacteria	1439	Open in IMG/M
3300001958\|GOS2232_1005697	Not Available	762	Open in IMG/M
3300001962\|GOS2239_1054445	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	1911	Open in IMG/M
3300001965\|GOS2243_1029945	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1633	Open in IMG/M
3300001965\|GOS2243_1083485	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	1771	Open in IMG/M
3300001966\|GOS2245_1090478	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	940	Open in IMG/M
3300001967\|GOS2242_1099947	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	1659	Open in IMG/M
3300001974\|GOS2246_10024662	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1714	Open in IMG/M
3300002033\|GOS24894_10301490	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	1890	Open in IMG/M
3300002040\|GOScombined01_100120315	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	1598	Open in IMG/M
3300002040\|GOScombined01_100367027	Not Available	866	Open in IMG/M
3300002040\|GOScombined01_103521254	Not Available	846	Open in IMG/M
3300002040\|GOScombined01_103697488	Not Available	957	Open in IMG/M
3300002040\|GOScombined01_105550695	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	818	Open in IMG/M
3300002686\|Ga0005232J37287_136456	Not Available	503	Open in IMG/M
3300003474\|NAP4_1089605	Not Available	634	Open in IMG/M
3300003477\|nap3_10076915	Not Available	775	Open in IMG/M
3300004941\|Ga0068514_1011981	Not Available	923	Open in IMG/M
3300005074\|Ga0070431_1243052	Not Available	579	Open in IMG/M
3300005432\|Ga0066845_10381321	Not Available	546	Open in IMG/M
3300005464\|Ga0068484_103736	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	975	Open in IMG/M
3300005510\|Ga0066825_10231541	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium BACL5 MAG-120820-bin39	680	Open in IMG/M
3300005510\|Ga0066825_10267443	Not Available	629	Open in IMG/M
3300005522\|Ga0066861_10219693	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	650	Open in IMG/M
3300005523\|Ga0066865_10338061	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	570	Open in IMG/M
3300005934\|Ga0066377_10176510	Not Available	654	Open in IMG/M
3300005960\|Ga0066364_10135115	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	840	Open in IMG/M
3300005960\|Ga0066364_10232131	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	642	Open in IMG/M
3300005971\|Ga0066370_10062226	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1189	Open in IMG/M
3300005971\|Ga0066370_10307421	Not Available	567	Open in IMG/M
3300005971\|Ga0066370_10371572	Not Available	516	Open in IMG/M
3300006024\|Ga0066371_10268985	All Organisms → cellular organisms → Bacteria → Proteobacteria	533	Open in IMG/M
3300006027\|Ga0075462_10171917	Not Available	658	Open in IMG/M
3300006166\|Ga0066836_10613545	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	658	Open in IMG/M
3300006305\|Ga0068468_1065987	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1277	Open in IMG/M
3300006329\|Ga0068486_1067744	Not Available	1567	Open in IMG/M
3300006334\|Ga0099675_1358456	Not Available	709	Open in IMG/M
3300006334\|Ga0099675_1410665	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1387	Open in IMG/M
3300006334\|Ga0099675_1659220	Not Available	692	Open in IMG/M
3300006337\|Ga0068495_1162004	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1425	Open in IMG/M
3300006337\|Ga0068495_1433554	Not Available	1163	Open in IMG/M
3300006345\|Ga0099693_1037428	Not Available	1561	Open in IMG/M
3300006345\|Ga0099693_1344048	Not Available	785	Open in IMG/M
3300006345\|Ga0099693_1384412	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	880	Open in IMG/M
3300006350\|Ga0099954_1025611	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	653	Open in IMG/M
3300006350\|Ga0099954_1089935	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1756	Open in IMG/M
3300006351\|Ga0099953_1064580	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1534	Open in IMG/M
3300006351\|Ga0099953_1422022	Not Available	649	Open in IMG/M
3300006351\|Ga0099953_1459816	Not Available	1428	Open in IMG/M
3300006351\|Ga0099953_1462302	Not Available	654	Open in IMG/M
3300006385\|Ga0079050_1035140	Not Available	1182	Open in IMG/M
3300006400\|Ga0075503_1157608	Not Available	534	Open in IMG/M
3300006413\|Ga0099963_1059548	Not Available	725	Open in IMG/M
3300006478\|Ga0100224_1027081	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1171	Open in IMG/M
3300006480\|Ga0100226_1483239	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	516	Open in IMG/M
3300006481\|Ga0100229_1108567	Not Available	1720	Open in IMG/M
3300007041\|Ga0101669_119805	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	645	Open in IMG/M
3300007116\|Ga0101667_1024157	All Organisms → cellular organisms → Bacteria	1025	Open in IMG/M
3300007137\|Ga0101673_1026400	All Organisms → cellular organisms → Bacteria	913	Open in IMG/M
3300007144\|Ga0101670_1045095	Not Available	723	Open in IMG/M
3300007152\|Ga0101672_1028765	All Organisms → cellular organisms → Bacteria → Proteobacteria	921	Open in IMG/M
3300007152\|Ga0101672_1074175	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	582	Open in IMG/M
3300007329\|Ga0079240_1453657	Not Available	749	Open in IMG/M
3300009126\|Ga0118723_1071784	Not Available	2224	Open in IMG/M
3300012394\|Ga0123365_1015671	Not Available	628	Open in IMG/M
3300012936\|Ga0163109_10880039	Not Available	654	Open in IMG/M
3300012954\|Ga0163111_11841208	Not Available	606	Open in IMG/M
3300016762\|Ga0182084_1267491	Not Available	536	Open in IMG/M
3300017726\|Ga0181381_1025937	All Organisms → cellular organisms → Bacteria → Proteobacteria	1324	Open in IMG/M
3300017767\|Ga0181406_1207435	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	581	Open in IMG/M
3300017818\|Ga0181565_10083376	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	2277	Open in IMG/M
3300017818\|Ga0181565_10522936	Not Available	769	Open in IMG/M
3300017956\|Ga0181580_10173770	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1528	Open in IMG/M
3300017958\|Ga0181582_10696375	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	612	Open in IMG/M
3300017964\|Ga0181589_10532374	Not Available	755	Open in IMG/M
3300017968\|Ga0181587_10366938	Not Available	957	Open in IMG/M
3300018418\|Ga0181567_10328466	Not Available	1024	Open in IMG/M
3300018421\|Ga0181592_10170084	All Organisms → cellular organisms → Bacteria → Proteobacteria	1649	Open in IMG/M
3300018421\|Ga0181592_11017468	Not Available	533	Open in IMG/M
3300018426\|Ga0181566_10080378	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	2495	Open in IMG/M
3300018876\|Ga0181564_10091914	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1917	Open in IMG/M
3300018895\|Ga0193547_10013803	Not Available	846	Open in IMG/M
3300019262\|Ga0182066_1631876	Not Available	775	Open in IMG/M
3300019266\|Ga0182061_1554822	Not Available	719	Open in IMG/M
3300019267\|Ga0182069_1605413	Not Available	624	Open in IMG/M
3300019281\|Ga0182077_1119839	Not Available	803	Open in IMG/M
3300020014\|Ga0182044_1041477	Not Available	819	Open in IMG/M
3300020378\|Ga0211527_10074176	All Organisms → cellular organisms → Bacteria → Proteobacteria	1021	Open in IMG/M
3300020392\|Ga0211666_10150515	Not Available	911	Open in IMG/M
3300020440\|Ga0211518_10259332	All Organisms → cellular organisms → Bacteria → Proteobacteria	834	Open in IMG/M
3300020442\|Ga0211559_10433094	Not Available	606	Open in IMG/M
3300021364\|Ga0213859_10229743	All Organisms → cellular organisms → Bacteria → Proteobacteria	853	Open in IMG/M
3300023105\|Ga0255782_10151042	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1188	Open in IMG/M
3300023170\|Ga0255761_10280193	All Organisms → cellular organisms → Bacteria → Proteobacteria	884	Open in IMG/M
3300023170\|Ga0255761_10381000	Not Available	705	Open in IMG/M
3300023173\|Ga0255776_10358951	All Organisms → cellular organisms → Bacteria → Proteobacteria	799	Open in IMG/M
3300023175\|Ga0255777_10625392	Not Available	529	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.01%
Host-Associated	Host-Associated	0.99%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	99.01%
Porifera	Host-Associated → Porifera	0.99%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	99.01%
Unclassified	Host-Associated → Porifera → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Oceanic	Environmental → Aquatic → Marine → Oceanic	44.55%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	33.66%
Volcanic	Environmental → Aquatic → Marine → Volcanic	5.94%
Unclassified	Environmental → Aquatic → Marine → Unclassified	4.95%
Coastal	Environmental → Aquatic → Marine → Coastal	3.96%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	3.96%
Strait	Environmental → Aquatic → Marine → Strait	1.98%
Unclassified	Host-Associated → Porifera → Unclassified → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	21.78%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	21.78%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	21.78%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	11.88%
Unclassified	Environmental → Aquatic → Marine → Volcanic → Unclassified	5.94%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	4.95%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	3.96%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	3.96%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	1.98%
Aphotic Zone	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone	0.99%
Unclassified	Host-Associated → Porifera → Unclassified → Unclassified → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	21.78%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	21.78%
Marine	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine	19.80%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	11.88%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	4.95%
Volcanic Co2 Seeps	Environmental → Aquatic → Marine → Volcanic → Unclassified → Volcanic Co2 Seeps	2.97%
Surface Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater	1.98%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	1.98%
Estuarine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Estuarine	1.98%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	1.98%
Volcanic Co2 Seep	Environmental → Aquatic → Marine → Volcanic → Unclassified → Volcanic Co2 Seep	1.98%
Marine	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine	0.99%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	0.99%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	0.99%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	0.99%
Marine Water	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Water	0.99%
Volcanic Co2 Seep Seawater	Environmental → Aquatic → Marine → Volcanic → Unclassified → Volcanic Co2 Seep Seawater	0.99%
Marine Benthic Sponge Stylissa Massa Associated	Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Marine Benthic Sponge Stylissa Massa Associated	0.99%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001349	Pelagic Microbial community sample from North Sea - COGITO 998_met_10	Environmental	Open in IMG/M
3300001945	Marine microbial communities from Galapagos, Equador - GS026	Environmental	Open in IMG/M
3300001949	Marine microbial communities from Panama City, Panama - GS022	Environmental	Open in IMG/M
3300001955	Marine microbial communities from Gulf of Panama, Panama - GS021	Environmental	Open in IMG/M
3300001957	Marine microbial communities from Wolf Island, Equador - GS035	Environmental	Open in IMG/M
3300001958	Marine microbial communities from Gulf of Mexico, USA - GS016	Environmental	Open in IMG/M
3300001962	Marine microbial communities from Cocos Island, Costa Rica - GS023	Environmental	Open in IMG/M
3300001965	Marine microbial communities from Coastal Floreana, Equador - GS028	Environmental	Open in IMG/M
3300001966	Marine microbial communities from Roca Redonda, Equador - GS030	Environmental	Open in IMG/M
3300001967	Marine microbial communities from Devil's Crown, Floreana Island, Equador - GS027	Environmental	Open in IMG/M
3300001974	Marine microbial communities from Upwelling, Fernandina Island, Equador - GS031	Environmental	Open in IMG/M
3300002033	Marine microbial communities from the Sargasso Sea - GS000a &b	Environmental	Open in IMG/M
3300002040	GS000c - Sargasso Station 3	Environmental	Open in IMG/M
3300002686	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI072_135m_B (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300003474	Estuarine microbial communities from the Sarno estuary, Gulf of Naples, Italy - Sample Station 4	Environmental	Open in IMG/M
3300003477	Estuarine microbial communities from the Sarno estuary, Gulf of Naples, Italy - Sample Station 3	Environmental	Open in IMG/M
3300004941	Marine water microbial communities from the Pohang Bay, Korea with extracellular vesicles - Pohang-0.2um	Environmental	Open in IMG/M
3300005074	Marine benthic sponge Stylissa massa associated microbial communities from Guam, USA	Host-Associated	Open in IMG/M
3300005432	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201310SV78	Environmental	Open in IMG/M
3300005464	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT233_1_0025m	Environmental	Open in IMG/M
3300005510	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV45	Environmental	Open in IMG/M
3300005522	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV257	Environmental	Open in IMG/M
3300005523	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV265	Environmental	Open in IMG/M
3300005934	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_SurfaceB_ad_5m_LV_B	Environmental	Open in IMG/M
3300005960	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_SurfaceA_ad_6m_LV_A	Environmental	Open in IMG/M
3300005971	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_SurfaceA_ad_5m_LV_A	Environmental	Open in IMG/M
3300006024	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_DCM_ad_63m_LV_B	Environmental	Open in IMG/M
3300006027	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNA	Environmental	Open in IMG/M
3300006166	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV91	Environmental	Open in IMG/M
3300006305	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0025m	Environmental	Open in IMG/M
3300006329	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT233_1_0500m	Environmental	Open in IMG/M
3300006334	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0025m	Environmental	Open in IMG/M
3300006337	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT237_3_0025m	Environmental	Open in IMG/M
3300006345	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0075m	Environmental	Open in IMG/M
3300006350	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT225_1_0075m	Environmental	Open in IMG/M
3300006351	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT225_1_0045m	Environmental	Open in IMG/M
3300006385	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S5 Surf_B metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006400	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_RNA2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006413	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_2_0025m	Environmental	Open in IMG/M
3300006478	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0125m	Environmental	Open in IMG/M
3300006480	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_0075m	Environmental	Open in IMG/M
3300006481	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_2_0025m	Environmental	Open in IMG/M
3300007041	Seawater microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'control', water-ic	Environmental	Open in IMG/M
3300007116	Seawater microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'bubble' site, waterEBis3	Environmental	Open in IMG/M
3300007137	Seawater microbiome, Papua New Guinea CO2 seep, Dobu 'control', water-dc	Environmental	Open in IMG/M
3300007144	Seawater microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'control', waterEBic1	Environmental	Open in IMG/M
3300007152	Seawater microbiome, Papua New Guinea CO2 seep, Dobu 'bubble', waterEBds3	Environmental	Open in IMG/M
3300007329	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S5 c16 Surf_B metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009126	Combined Assembly of Gp0139357, Gp0139356	Environmental	Open in IMG/M
3300012394	Marine microbial and viral communities from Louisana Shelf, Gulf of Mexico - GoM_2015_C6C_201_2m (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012936	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St13 metaG	Environmental	Open in IMG/M
3300012954	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St18 metaG	Environmental	Open in IMG/M
3300016762	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071413CT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017726	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 4 SPOT_SRF_2009-09-24	Environmental	Open in IMG/M
3300017767	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 29 SPOT_SRF_2011-12-20	Environmental	Open in IMG/M
3300017818	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017956	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071403BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017958	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017964	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071410BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017968	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071409AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018418	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101403AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018421	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018426	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101402AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018876	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011513CT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018895	Metatranscriptome of marine prokaryotic communities collected during Tara Oceans survey from station TARA_011 - TARA_X100000009 (ERX1408504-ERR1336912)	Environmental	Open in IMG/M
3300019262	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 101412AT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019266	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 101407AT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019267	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071402VT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019281	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071409AT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020014	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 011503CT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020378	Marine microbial communities from Tara Oceans - TARA_B100000066 (ERX556006-ERR599102)	Environmental	Open in IMG/M
3300020392	Marine microbial communities from Tara Oceans - TARA_B100000963 (ERX555916-ERR599163)	Environmental	Open in IMG/M
3300020440	Marine microbial communities from Tara Oceans - TARA_E500000178 (ERX555952-ERR599043)	Environmental	Open in IMG/M
3300020442	Marine microbial communities from Tara Oceans - TARA_B100002019 (ERX556121-ERR599162)	Environmental	Open in IMG/M
3300021364	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304	Environmental	Open in IMG/M
3300023105	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101408AT metaG	Environmental	Open in IMG/M
3300023170	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071407BT metaG	Environmental	Open in IMG/M
3300023173	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071413AT metaG	Environmental	Open in IMG/M
3300023175	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101402AT metaG	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI20160J14292_100375261	3300001349	Pelagic Marine	GLILDCSKKKPPAKAGSCDLNALAGFIKRPQVVLTRR*
GOS2241_10109702	3300001945	Marine	MVQIPGFILDYSKKKPPTKAGLKDFDALAGFFKRPQVALTRRYVIYSK*
GOS2238_10229132	3300001949	Marine	MVQIPGLILDYPKKKPPAKAWSKDFCALAGFIKRPQVALTGAGFLYQ*
GOS2237_10219563	3300001955	Marine	MVQIPGLILDYSKKKPPAKAVVYQTSNALAGFIKRPQVVLTQR*
GOS2250_10268611	3300001957	Marine	MVQIPGLIYGYSKKKPPTKAGLNDLCALAGFIKRP
GOS2232_10056972	3300001958	Marine	MVQIPGLILDYSKKKPPAKAWSEDLCALAGFIKRPQVALTQR*
GOS2239_10544454	3300001962	Marine	MVQIPGLIFDLSKKKPPAKAGLKDLCALAGFIKRPQVALTQRLIKI*
GOS2243_10299452	3300001965	Marine	MVQIPGLILDYSKKKPPAKAVVFVTLALAGFIKRPQVALTRR*
GOS2243_10834853	3300001965	Marine	MVQIPGLILDFSKKKPPAKAGLKDLGALAGFIKRPQVALTQR*
GOS2245_10904782	3300001966	Marine	MVQIPGLILDYSKKKPPTKAVVCKTYDALAGFIKRPQVALTRR*
GOS2242_10999474	3300001967	Marine	MVQIPDLILDNSKKKPPAKAWSEDFCALAGFIKRPQVALTRR*
GOS2246_100246622	3300001974	Marine	MVQIPGLILDYSKKKPPTKAVSYDLNALAGFIKRPQVVLTQR*
GOS24894_103014904	3300002033	Marine	MVQIPGLILDYSKKKPPAKAGSEDFCALAGFIKRPQVALTPLDGL
GOScombined01_1001203152	3300002040	Marine	MVQIPGLILDYSKKKPPAKAVVYQTYDALAGFIKRPQVALTQR*
GOScombined01_1003670272	3300002040	Marine	MVQIPGLIFSLFKKKPPTKAGSLDLNALAGFIKRPQFVLTRRYTIYSKK
GOScombined01_1035212541	3300002040	Marine	MVQIPGLILDYSKKKPPTKAGLLDLDALAGFIKRPQVALTRR*
GOScombined01_1036974881	3300002040	Marine	MVQIPGLILDFSKKKPPAKAGLNDLCALAGFIKRSQ
GOScombined01_1055506952	3300002040	Marine	MVQIPDLILDNSKKKPPAKAGSEDFCALAGFIKRPQVALTRR*
Ga0005232J37287_1364561	3300002686	Marine	VYNTVQIPGLILDYSKKKPPTKAVSCDLNALAGFIKRPQV
NAP4_10896052	3300003474	Estuarine	YNMVQIPGLILDYSKKKPPAKAVVYQTYDALAGFIKRPQVALTRR*
nap3_100769152	3300003477	Estuarine	MVQIPDLILDCSKKKPPTKAGLKDLFALAGFIKRPQVVLTRR*
Ga0068514_10119811	3300004941	Marine Water	MVQIPGLILDCSKKKPPTKAVVYQTYDALAGFIKRPQVALTQR*
Ga0070431_12430521	3300005074	Marine Benthic Sponge Stylissa Massa Associated	MVQIPGLILNCSKKKPPTKAVVVDLNALAGFIKRPQVVLTRR
Ga0066845_103813212	3300005432	Marine	MVQIPGLILDYSKKKPPAKAVVYQTYDALAGFIKRPQVALTRR*
Ga0068484_1037362	3300005464	Marine	MVQIPGLISDFSKKKPPAKAGLNDLCALAGFIKRPQVALTQR*
Ga0066825_102315411	3300005510	Marine	MVQIPVLILENDKKKPPAKAVVYQTYDALAGFIKRPQVALTRR*
Ga0066825_102674432	3300005510	Marine	MVQIPGLILDCSKKKPPAKAVVYQTYDALAGFIKRPQVALTRR*
Ga0066861_102196932	3300005522	Marine	MVQIPGLILDYSKKKPPTKAVSFDLNALAGFIKRPQVVLTRR*
Ga0066865_103380612	3300005523	Marine	MVQIPGLILDYSKKKPPTKAVVVRLMPLAGFIKRPQVALTQR*
Ga0066377_101765102	3300005934	Marine	MVQIPGLVLDCSKKKPPAKAVVVRLMALAGFIKRPQVALTQR*
Ga0066364_101351152	3300005960	Marine	MVQIPGLILDFSKKKPPTKAGLKDLGALAGFIKRPQVALTQR*
Ga0066364_102321312	3300005960	Marine	MVQIPGLISDCSKKKPPAKAGLNDLCALAGFIKRPQVALTQR*
Ga0066370_100622262	3300005971	Marine	MVQIPGLILDFSKKKPPTKAGLKDLGALAGFIKRPQVALTQRWIKYSEN*
Ga0066370_103074211	3300005971	Marine	MVQIPGLILDCSKKKPPAKAGLNDLCALAGFIKRPQVALTQR
Ga0066370_103715722	3300005971	Marine	SKKKPPTKAGLKDFDALAGFFKRPQVALTQRYKIYSK*
Ga0066371_102689852	3300006024	Marine	VYNTVQIPGFYLRKKKPPTKAGLRLNALAGFIKRPQVVITQR*
Ga0075462_101719172	3300006027	Aqueous	GLILDCSKKKPPTKAVSCDSNALAGFIKRPQVALTGADGLYQLFQ*
Ga0066836_106135452	3300006166	Marine	MVQIPGLILKVQKKTPTKAVAMRLIALAGFIKRSAI*
Ga0068468_10659872	3300006305	Marine	MVQIPGLILDCSKKKPPAKAGLKDLCALAGFIKRPQVALTQR*
Ga0068486_10677442	3300006329	Marine	MVQIPGLILDFSKKKPPAKAGLLDFNALAGFIKRPQVVLTQRFAIYSKKFRILSTIN*
Ga0099675_13584562	3300006334	Marine	MVQIPGLILDCSKKKPPAKAGLNDLCALAGFIKRPQVALTQRL
Ga0099675_14106652	3300006334	Marine	MVQIPDLILDCSKKKPPAKAVSLDLNALAGFIKRPQVVLTRR*
Ga0099675_16592201	3300006334	Marine	MVQIPGLILDFSKKKPPTKAGLKDLGALAGFIKRPQVALTQR
Ga0068495_11620042	3300006337	Marine	MVQIPGLILDFSKKKPPAKAGLNDLCALAGFIKRPQVALTQR*
Ga0068495_14335541	3300006337	Marine	MVQIPGLILDCSKKKPPAKAGLNDLCALAGFIKRPQVALTQRLKIYTKK
Ga0099693_10374281	3300006345	Marine	MVQIPGLITDFSKKKPPAKAGPNDLCALAGFIKRPQVALTRAD
Ga0099693_13440482	3300006345	Marine	MVQIPGFILDYSKKKPPTKAGLKDFDALAGFFKRPQVALTRRYKIYSK*
Ga0099693_13844122	3300006345	Marine	MVQIPGLILDYSKKKPPAKAGLYDYCALAGFIKHPQVALTQR*
Ga0099954_10256112	3300006350	Marine	MVQIPGLILDCSKKKPPAKAGLKDLGALAGFIKRPQVVLTRR*
Ga0099954_10899352	3300006350	Marine	MVQIPGFISDFSKKKPPAKAGLNDICALAGFIKRPQVALTQR*
Ga0099953_10645802	3300006351	Marine	MVQIPGLISDCSKKKPPAKAGLNDFCALAGFIKRPQVALTQR*
Ga0099953_14220221	3300006351	Marine	MVQIPDLILDYSKKKPPTKAGSFDLNALAGFIKRPQVVLTRR*
Ga0099953_14598162	3300006351	Marine	MVQIPGLILDCSKKKPPAKAGLQDLDALAGFFTRPQVVLTGAK
Ga0099953_14623022	3300006351	Marine	MVQIPGLILDLSKKKPPAKAGLNDLCALAGFVKRPQVALTQRF*
Ga0079050_10351402	3300006385	Marine	MVQIPGLILDFSKKKPPTKAGLKDLGALAGFIKRPQVAL
Ga0075503_11576081	3300006400	Aqueous	MVQIPGLILDYSKKKPPTKAGLIDLIALAGFIKAPQFDL
Ga0099963_10595481	3300006413	Marine	MVQIPGLILDYSKKKPPTKAGLKDLGALAGFIKRPQVALTQR
Ga0100224_10270812	3300006478	Marine	MVQIPGLILDYSKKKPPAKAWSDDFCALAGFIKRPQVALTQRY*
Ga0100226_14832392	3300006480	Marine	MVQIPGLIFDCTKKNHLLNGGLNDLCALAGFIKRPQVAITRR*
Ga0100229_11085671	3300006481	Marine	MVQIPGLILDYSKKKPPAKAGLNDLCALAGFIKRPQVALTQR*
Ga0101669_1198052	3300007041	Volcanic Co2 Seep	MVQIPGLILDCSKKKPPAKAVVYQTYDALAGFIKRPQVVLTRR*
Ga0101667_10241573	3300007116	Volcanic Co2 Seep Seawater	MVQIPGLILDCSKKKPPAKAVVYQTNDALAGFIKRPQVALTRR*
Ga0101673_10264003	3300007137	Volcanic Co2 Seeps	LDYSKKKPPTKAVVKDLDALAGFIKRPQVALTRR*
Ga0101670_10450951	3300007144	Volcanic Co2 Seep	MVQIPGLILDCSKKKPPAKAGLNDLCALAGFIKRPQVALTQRYAIYSEIQDFVNYQLN
Ga0101672_10287653	3300007152	Volcanic Co2 Seeps	MVQIPGLILDCSKKKPPAKAVVCQTNDALAGFIKRPQVALTRR*
Ga0101672_10741752	3300007152	Volcanic Co2 Seeps	MVQIPGLISDCSKKKPPAKAGLDDLCALAGFIKRPQVALTQR*
Ga0079240_14536572	3300007329	Marine	MVQIPGFILDYSKKKPPAKAVVYQTYDALAGFIKRPQVAL
Ga0118723_10717841	3300009126	Marine	MVQIPGFLILLCKKKPPTKAVVIWGSVALAGFIKRSQFDLNQRL*
Ga0123365_10156712	3300012394	Marine	MVQIPGLILDCSKKKPPAKAVVYQTYDALAGFIKRPQV
Ga0163109_108800391	3300012936	Surface Seawater	YNMVQIPGLILDCSKKKPPAKAVVYQTYDALAGFVKRPQVALTRR*
Ga0163111_118412081	3300012954	Surface Seawater	MVQIPGLILDCSKKKPPAKAVVYQTNDALAGFIKRPQV
Ga0182084_12674911	3300016762	Salt Marsh	MVQIPGLILDCSKKKPPAKAVVYQTYDALAGFIKRPQVALT
Ga0181381_10259372	3300017726	Seawater	MVQIPGLILDYSKKKPPAKAVVYQTFDALAGFIKRPQVALTQR
Ga0181406_12074352	3300017767	Seawater	MVQIPGLILDYSKKKPPAKAVVVYALAGFIKRPQVVLTQR
Ga0181565_100833765	3300017818	Salt Marsh	MVQIPGLILDCSKKKPPAKAVVYQTYDALAGFIKRPQVALTRR
Ga0181565_105229361	3300017818	Salt Marsh	MVQIPGLILDCSKKKPPTKAVVYQTYDALAGFIKRPQVALTQR
Ga0181580_101737703	3300017956	Salt Marsh	QVYNMVQIPGLILDYSKKKPPAKAVVYQTYDALAGFVKRPQVALTRR
Ga0181582_106963752	3300017958	Salt Marsh	MVQIPGLILDYSKKKPPTKAVVYQTYDALAGFIKRPQVALTRR
Ga0181589_105323741	3300017964	Salt Marsh	MVQIPGLILDCSKKKPPAKAVVYQTYDALAGFIKRP
Ga0181587_103669382	3300017968	Salt Marsh	PGLILDCSKKKPPTKAVVCKTYDALAGFIKRPQVALTRR
Ga0181567_103284662	3300018418	Salt Marsh	YNMVQIPGLILDYSKKKPPAKAVVYQTYDALAGFVKRPQVVLTRR
Ga0181592_101700841	3300018421	Salt Marsh	VQIPGLILDCSKKKPPTKAVVYQTYDALAGFIKRPQVALTQR
Ga0181592_110174681	3300018421	Salt Marsh	GLILDYSKKKPPAKAVVYQTYDALAGFIKRPQVALTRRC
Ga0181566_100803785	3300018426	Salt Marsh	LDCSKKKPPAKAVVYQTYDALAGFIKRPQVALTRR
Ga0181564_100919142	3300018876	Salt Marsh	MVQIPGLILDYSKKKPPAKAVVYQTYDALAGFVKRPQVALTRR
Ga0193547_100138032	3300018895	Marine	MVQIPGLILDYSKKKPPAKAVVYQTYDALAGFIKRPQVALTRRS
Ga0182066_16318761	3300019262	Salt Marsh	MVQIPGLILDYSKKKPPAKAVVYQTYDALAGFIKRPQVA
Ga0182061_15548222	3300019266	Salt Marsh	MVQIPGLILDCSKKKPPAKAVVYQTNDALAGFIKRPQVA
Ga0182069_16054132	3300019267	Salt Marsh	MVQIPGLILDYSKKKPPAKAVVYQTYDALAGFIKRPQVAL
Ga0182077_11198392	3300019281	Salt Marsh	MVQIPGLILDCSKKKPPAKAVVYQTYDALAGFIKRPQVA
Ga0182044_10414771	3300020014	Salt Marsh	MVQIPGLILDCSKKKPPAKAVVYQTNDALAGFIKRPQVAL
Ga0211527_100741761	3300020378	Marine	CQVYNMVQIPGLILDYSKKKPPAKAVVYQTYDALAGFIKRPQVALTRR
Ga0211666_101505151	3300020392	Marine	MVQIPGLILDYSKKKPPAKAVVIRLCALAGFIKRPQVALTQRWSI
Ga0211518_102593323	3300020440	Marine	GLILDYSKKKPPAKAVVYQTYDALAGFIKRPQVALTRR
Ga0211559_104330942	3300020442	Marine	CQVYNMVQIPGLILDCSKKKPPAKAVVYQTYDALAGFIKRPQVALTRR
Ga0213859_102297431	3300021364	Seawater	LILDYSKKKPPAKAVVYQTYDALAGFIKRPQVALTRR
Ga0255782_101510423	3300023105	Salt Marsh	AKCQVYNMVQIPGLILDCSKKKPPAKAVVYQTYDALAGFIKRPQVALTRR
Ga0255761_102801931	3300023170	Salt Marsh	TSAKCQVYNMVQIPGLILDYSKKKPPAKAVVYQTYDALAGFIKRPQVALTRR
Ga0255761_103810003	3300023170	Salt Marsh	QIPGLILDCSKKKPPAKAVVCQTYDALAGFIKRPQVALTRR
Ga0255776_103589511	3300023173	Salt Marsh	MVQIPGLILDCSKKKPPAKAVVYQTNDALAGFIKRPQVALTRR
Ga0255777_106253922	3300023175	Salt Marsh	MVQIPDLILDCSKKKPPAKAVVYQTNDALAGFIKRPQVALTRR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F103871

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences