NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F104271

Metagenome / Metatranscriptome Family F104271

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F104271
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 41 residues
Representative Sequence LVFFDSLAGKAFSARSIKLCLVDNQRSSGVTVAGFEFVSD
Number of Associated Samples 66
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 98.00 %
% of genes from short scaffolds (< 2000 bps) 96.00 %
Associated GOLD sequencing projects 65
AlphaFold2 3D model prediction Yes
3D model pTM-score0.32

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (90.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere
(77.000 % of family members)
Environment Ontology (ENVO) Unclassified
(92.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant surface
(87.000 % of family members)


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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 36.76%    β-sheet: 0.00%    Coil/Unstructured: 63.24%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.32
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF07727RVT_2 1.00


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A90.00 %
All OrganismsrootAll Organisms10.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300005618|Ga0068864_101199383Not Available757Open in IMG/M
3300005841|Ga0068863_101780737Not Available626Open in IMG/M
3300005841|Ga0068863_101817246Not Available619Open in IMG/M
3300009553|Ga0105249_10833658Not Available987Open in IMG/M
3300009553|Ga0105249_12571371Not Available581Open in IMG/M
3300009975|Ga0105129_117435Not Available541Open in IMG/M
3300009980|Ga0105135_112192Not Available677Open in IMG/M
3300014486|Ga0182004_10147521Not Available892Open in IMG/M
3300014968|Ga0157379_11124789Not Available753Open in IMG/M
3300015278|Ga0182099_1002781Not Available1185Open in IMG/M
3300015280|Ga0182100_1045758Not Available658Open in IMG/M
3300015290|Ga0182105_1089150Not Available541Open in IMG/M
3300015293|Ga0182103_1028338Not Available757Open in IMG/M
3300015297|Ga0182104_1079685Not Available586Open in IMG/M
3300015301|Ga0182184_1102464All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum500Open in IMG/M
3300015310|Ga0182162_1027671Not Available861Open in IMG/M
3300015311|Ga0182182_1085309Not Available574Open in IMG/M
3300015313|Ga0182164_1041149Not Available782Open in IMG/M
3300015316|Ga0182121_1044926Not Available793Open in IMG/M
3300015317|Ga0182136_1117879Not Available540Open in IMG/M
3300015319|Ga0182130_1016947Not Available1007Open in IMG/M
3300015319|Ga0182130_1124347Not Available522Open in IMG/M
3300015320|Ga0182165_1023385Not Available977Open in IMG/M
3300015320|Ga0182165_1045700Not Available781Open in IMG/M
3300015324|Ga0182134_1041982Not Available802Open in IMG/M
3300015324|Ga0182134_1070715Not Available669Open in IMG/M
3300015325|Ga0182148_1053506All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Arundinoideae → Arundineae → Arundo → Arundo donax727Open in IMG/M
3300015326|Ga0182166_1033756Not Available843Open in IMG/M
3300015326|Ga0182166_1097432Not Available587Open in IMG/M
3300015329|Ga0182135_1023086All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum990Open in IMG/M
3300015329|Ga0182135_1080061Not Available651Open in IMG/M
3300015330|Ga0182152_1114643Not Available568Open in IMG/M
3300015332|Ga0182117_1069835Not Available728Open in IMG/M
3300015333|Ga0182147_1075670Not Available697Open in IMG/M
3300015333|Ga0182147_1085932Not Available664Open in IMG/M
3300015334|Ga0182132_1070209All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum719Open in IMG/M
3300015334|Ga0182132_1164153Not Available509Open in IMG/M
3300015335|Ga0182116_1147025Not Available550Open in IMG/M
3300015336|Ga0182150_1033198Not Available912Open in IMG/M
3300015336|Ga0182150_1100904Not Available616Open in IMG/M
3300015337|Ga0182151_1045653Not Available820Open in IMG/M
3300015337|Ga0182151_1114090Not Available587Open in IMG/M
3300015338|Ga0182137_1059067Not Available794Open in IMG/M
3300015338|Ga0182137_1142786All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta555Open in IMG/M
3300015339|Ga0182149_1004772Not Available1663Open in IMG/M
3300015339|Ga0182149_1109828Not Available610Open in IMG/M
3300015340|Ga0182133_1170430Not Available530Open in IMG/M
3300015348|Ga0182115_1185722Not Available666Open in IMG/M
3300015348|Ga0182115_1185956Not Available666Open in IMG/M
3300015348|Ga0182115_1237011Not Available582Open in IMG/M
3300015349|Ga0182185_1002918Not Available2595Open in IMG/M
3300015349|Ga0182185_1096463Not Available845Open in IMG/M
3300015349|Ga0182185_1099675Not Available833Open in IMG/M
3300015349|Ga0182185_1217378Not Available580Open in IMG/M
3300015350|Ga0182163_1177593Not Available666Open in IMG/M
3300015350|Ga0182163_1257682Not Available547Open in IMG/M
3300015350|Ga0182163_1259906Not Available544Open in IMG/M
3300015352|Ga0182169_1153962Not Available750Open in IMG/M
3300015352|Ga0182169_1178130Not Available695Open in IMG/M
3300015352|Ga0182169_1260368Not Available563Open in IMG/M
3300015353|Ga0182179_1241903All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae581Open in IMG/M
3300015353|Ga0182179_1296898Not Available525Open in IMG/M
3300015354|Ga0182167_1044306Not Available1501Open in IMG/M
3300015354|Ga0182167_1083840Not Available1151Open in IMG/M
3300015354|Ga0182167_1117368Not Available978Open in IMG/M
3300015354|Ga0182167_1163479Not Available820Open in IMG/M
3300015354|Ga0182167_1198219Not Available735Open in IMG/M
3300015354|Ga0182167_1332636Not Available534Open in IMG/M
3300017408|Ga0182197_1018348Not Available1103Open in IMG/M
3300017412|Ga0182199_1055939Not Available821Open in IMG/M
3300017412|Ga0182199_1103706Not Available657Open in IMG/M
3300017414|Ga0182195_1049653All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum888Open in IMG/M
3300017422|Ga0182201_1028186Not Available866Open in IMG/M
3300017424|Ga0182219_1040697All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Saccharinae → Saccharum → Saccharum officinarum complex → Saccharum officinarum738Open in IMG/M
3300017435|Ga0182194_1111881Not Available568Open in IMG/M
3300017439|Ga0182200_1009494Not Available1294Open in IMG/M
3300017439|Ga0182200_1089986Not Available622Open in IMG/M
3300017439|Ga0182200_1104111Not Available591Open in IMG/M
3300017446|Ga0182217_1065378Not Available847Open in IMG/M
3300017447|Ga0182215_1146733Not Available543Open in IMG/M
3300017693|Ga0182216_1032769Not Available1036Open in IMG/M
3300026095|Ga0207676_11332912Not Available713Open in IMG/M
3300028049|Ga0268322_1004990Not Available1042Open in IMG/M
3300028057|Ga0268352_1016173Not Available776Open in IMG/M
3300028153|Ga0268320_1026372Not Available525Open in IMG/M
3300028153|Ga0268320_1030183Not Available503Open in IMG/M
3300028154|Ga0268341_1005539Not Available850Open in IMG/M
3300028253|Ga0268316_1003018Not Available923Open in IMG/M
3300028381|Ga0268264_10109264All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Ferruginibacter → unclassified Ferruginibacter → Ferruginibacter sp. HRS2-292419Open in IMG/M
3300028464|Ga0268302_103357Not Available692Open in IMG/M
3300028472|Ga0268315_1011598All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae658Open in IMG/M
3300028473|Ga0268319_1015962Not Available574Open in IMG/M
3300028525|Ga0268305_103126Not Available763Open in IMG/M
3300028529|Ga0268311_1005719Not Available831Open in IMG/M
3300032465|Ga0214493_1130582Not Available588Open in IMG/M
3300032916|Ga0314734_1061657Not Available756Open in IMG/M
3300032934|Ga0314741_1042872Not Available1038Open in IMG/M
3300033535|Ga0314759_1202035Not Available632Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Switchgrass PhyllosphereHost-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere77.00%
PhyllosphereHost-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere11.00%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere5.00%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere2.00%
Switchgrass AssociatedHost-Associated → Plants → Unclassified → Unclassified → Unclassified → Switchgrass Associated2.00%
RootHost-Associated → Plants → Roots → Unclassified → Unclassified → Root1.00%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.00%
Miscanthus PhyllosphereHost-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Miscanthus Phyllosphere1.00%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300005618Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2Host-AssociatedOpen in IMG/M
3300005841Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2Host-AssociatedOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300009975Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_187 metaGHost-AssociatedOpen in IMG/M
3300009980Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_219 metaGHost-AssociatedOpen in IMG/M
3300014486Endophyte microbial communities from Sorghum bicolor roots, Mead, Nebraska, USA - 072115-40_1 MetaGHost-AssociatedOpen in IMG/M
3300014968Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaGHost-AssociatedOpen in IMG/M
3300015278Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015280Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015290Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015293Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015297Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015301Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015310Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015311Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015313Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015316Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015317Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015319Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015320Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015324Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015325Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015326Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015329Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015330Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015332Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015333Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015334Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015335Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015336Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015337Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015338Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015339Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015340Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015348Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015349Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015350Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015352Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015353Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015354Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017408Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017412Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017414Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017422Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017424Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_MAIN_03OCT2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017435Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017439Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017446Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_03OCT2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017447Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_03OCT2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017693Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_03OCT2016_LD1 MGHost-AssociatedOpen in IMG/M
3300026095Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028049Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_26JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028057Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_18SEP2017_LD1Host-AssociatedOpen in IMG/M
3300028153Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_26JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028154Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_MAIN_28AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028253Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_26JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028381Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028464Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_15MAY2017_LD1Host-AssociatedOpen in IMG/M
3300028472Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_05JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028473Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_26JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028525Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_NF_15MAY2017_LD1Host-AssociatedOpen in IMG/M
3300028529Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_05JUN2017_LD1Host-AssociatedOpen in IMG/M
3300032465Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_12JUL2016_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032916Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_26JUN2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032934Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_17JUL2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300033535Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_28AUG2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0068864_10119938313300005618Switchgrass RhizosphereVFFDSLAGKAFSARSIKLCLVDNQRSGGVTVAGFEFVSD*
Ga0068863_10178073713300005841Switchgrass RhizosphereLAGKAFSARSIKLCLVDNQRSIGLMIAGLRIMSD*
Ga0068863_10181724623300005841Switchgrass RhizosphereFLLVFFDSLVEKVFLASSIKSCLVDNQWSYVVTIAGLGIVSD*
Ga0105249_1083365813300009553Switchgrass RhizosphereFLLVFFDSLAGKAFSARSIKLCLVDNQWSGGVTVAGFEFVYD*
Ga0105249_1257137113300009553Switchgrass RhizosphereLVFFDSLAGKAFSARSIKLCLVDNQRSGGVTVAGFEFVSD*
Ga0105129_11743513300009975Switchgrass AssociatedLAGKAFLARSFKLCLVDNQRSCGVTVAGFEFVSD*
Ga0105135_11219213300009980Switchgrass AssociatedIIRLRIYIVLLVSFDSLVGKAFSARSITLCLVDNQRSGGVTVAGFEFVFD*
Ga0182004_1014752113300014486RootLVFLDLLAGTTFLARLIKLCLVDNQRSSGVTVAGFESC*
Ga0157379_1112478913300014968Switchgrass RhizosphereDCVVYIFLLVFFDSLAGKAFSVRSIKLCLVDNQWSSGVTVA*
Ga0182099_100278113300015278Switchgrass PhyllospherePFLLVFFDSLAGKAFSARSIKLCLVDNQRSGGVTVAGFEFVSD*
Ga0182100_104575813300015280Switchgrass PhyllosphereVFFDSLAGKAFLARSIELCSVDNQQSSSVMVAGLQIISD*
Ga0182105_108915023300015290Switchgrass PhyllosphereRVYIFLLVSFDSLAGKAFSARSIKLFLVDNQRSSGVAVAGFESC*
Ga0182103_102833813300015293Switchgrass PhyllosphereFDSLAGKAFSARSIKLCLVDNQRSGGVTVAGFEFMSD*
Ga0182104_107968513300015297Switchgrass PhyllosphereGSFAGKAFSARSIKLCLVDNQRSSGVTIAGFEFVFD*
Ga0182184_101504223300015301Switchgrass PhyllosphereCNFRLRVYPFLLVFFDSLARKAFSARSIKLCLVDNQRSGGVTVAGFEFISD*
Ga0182184_110246423300015301Switchgrass PhyllosphereVYIFLLVFFDSLAGKAFSARSIKLCLVDNQQSSGVTVA*
Ga0182162_102767113300015310Switchgrass PhyllosphereLLVFFDFLAGKAFFVRLIELCLVDNQWSNGVTVVGVQIVF
Ga0182182_108530923300015311Switchgrass PhyllosphereLLVFFDSLAGKAFLARSIKLFLVDNQWSGGVTVAGFEFVSD*
Ga0182164_104114923300015313Switchgrass PhyllosphereVYIFLLVSFDSLAGKAFLARSIKLCLVDNERSNGVAVAGFESC*
Ga0182121_104492623300015316Switchgrass PhyllosphereVFFDLRAGKAFLATSIKLCLVDNQRCGGITVAGFEFVSD*
Ga0182136_107683513300015317Switchgrass PhyllosphereIYNFRLCVYPFLLVFFDFLAGKAFFVRLIELCLVDNQWSSGVTVVGVQIVSD*
Ga0182136_111787913300015317Switchgrass PhyllosphereILRVYIFLLVSFDSLVGKAFSARSIKLSFVDNQRSSGVAVAGFESC*
Ga0182130_101694713300015319Switchgrass PhyllosphereYPFLLVFFDSLAGKAFSARSIKLCLVDNQRSGGVMVAGFEFVSD*
Ga0182130_112434713300015319Switchgrass PhyllosphereLVFFDSLARKAFLARSIKLCLVDNQRSGGVTVAGFEFMSD*
Ga0182165_102338513300015320Switchgrass PhyllosphereLLVFFDSLVGKTFLARSIKLCLVDNQRSTGVMVAGFESCLI*
Ga0182165_104570013300015320Switchgrass PhyllosphereFDSLAGKAFLARSIKLCLVDKQWSSGVTVAGLRIMSD*
Ga0182134_104198213300015324Switchgrass PhyllosphereYPFLLVFFDSLAGKAFLARSIKLCLVDNQWSSGVTVAGL*
Ga0182134_107071513300015324Switchgrass PhyllosphereVYSFLLVFFDSVAGKTFLARLIKLYLIDNQWNSGVMVAGLRIVSD*
Ga0182148_105350613300015325Switchgrass PhyllosphereLLVFFDSLAGKAFLERSIKLCLVDNQWSGGVMVAGFEF
Ga0182166_103375623300015326Switchgrass PhyllosphereFAEKDFSARSIKLCLVDNQRSNDVTVAVLRIVYD*
Ga0182166_109743213300015326Switchgrass PhyllosphereLVFFDSLAEKAFLARSIKLCLVDNQWSGGVMVAGFEFMSD*
Ga0182135_102308623300015329Switchgrass PhyllosphereVYIFLLVSFDSLAGKAFLARSIKLCLVDNQRSSGVALAVFESS*
Ga0182135_108006113300015329Switchgrass PhyllosphereFLLVFFDSLVGKAFSARSIKMCLVDNQRSSGVTVA*
Ga0182152_111464313300015330Switchgrass PhyllosphereFLLVFFDSLAGKAFLARSIKLCLVDNQWSGGVTVAGFELVSD*
Ga0182117_106983513300015332Switchgrass PhyllosphereSFILAIIRLCVYPFLLVFFDSLVEKAFLARSIKLCLVDNQRSSGVAVAGFESC*
Ga0182147_107567013300015333Switchgrass PhyllosphereTFLLVFFDSLAGKVFSVRSIKLCLVDNQWSSGVTVAGLRIVSD*
Ga0182147_108593223300015333Switchgrass PhyllosphereFDSLARKAFSARSIKLCLVDNQRSGGVTVAGFEFVSD*
Ga0182132_107020913300015334Switchgrass PhyllosphereFDSLAGKAFSVRSIKLCLVDNQRSGGVTVAGFEFVFD*
Ga0182132_116415313300015334Switchgrass PhyllosphereNLLAEKVFLARSIKLCLVDNQRSSGVTVAGLRIVSD*
Ga0182116_114702513300015335Switchgrass PhyllosphereLVGKAFLARSIKLCLVDNQRSSGVTVAGLRIVSD*
Ga0182150_103319813300015336Switchgrass PhyllosphereRLRVYPFLLVFFDSLAGKAFSARSIKLCLVDNQWSSGVAVVGFESC*
Ga0182150_110090413300015336Switchgrass PhyllosphereSLAGKAFSARSIKLCLVDNQRSGGVTVAGFEFVSD*
Ga0182151_104565323300015337Switchgrass PhyllosphereFFDSLAGKAFSARSIKLCLVDNQRSGGVTVAGFEFVSD*
Ga0182151_111409013300015337Switchgrass PhyllosphereLRVYPFLLVFFDSLARKAFSARSIKLCLVDNQRSGGVTVAGFEFVSY*
Ga0182137_105906713300015338Switchgrass PhyllosphereVSFDSLAGKAFSARSIKLCLVDNQRNSGVAVAGFESC*
Ga0182137_114278623300015338Switchgrass PhyllosphereNSLAGKAFLARSIKLCLVDNQRSSGVAVTGFESC*
Ga0182149_100477213300015339Switchgrass PhyllosphereIFLLVSFDSLAEKVFSARSIKLCLVDNQQSSGVAVAGFESC*
Ga0182149_110982823300015339Switchgrass PhyllosphereFLLVSFDLLAEKAFSARSIKLCLVDNQRSSGVAVAGFESC*
Ga0182133_117043013300015340Switchgrass PhyllosphereFNLLVGKAFSTRSIKLCLVDNQRSSGVAVAGFELR*
Ga0182115_118572223300015348Switchgrass PhyllosphereVFFDSLAGKAFSARSIKLCLVDNQRSGGVMVAGFEFVSD*
Ga0182115_118595613300015348Switchgrass PhyllosphereLLVFFDSLAGKAFSARSIKLCLVDNQRSCGVMVA*
Ga0182115_123701113300015348Switchgrass PhyllosphereVFFDSLAGKAFLTRSIKLCLVDNQQSSGVTVAGH*
Ga0182185_100291813300015349Switchgrass PhyllosphereNFRLCVYPFLLVFFDSLAGKAFSARSIKLCLVDNQRSGGVTVAGFEFVSD*
Ga0182185_109646323300015349Switchgrass PhyllosphereFFDSLAGKAFLARTIKLCLVDNQQSSDVTVVGLRIVSD*
Ga0182185_109967523300015349Switchgrass PhyllosphereFLLVFFDSLAGKAFLARSIKLCLVDNQRSSGVMVASFEFVSD*
Ga0182185_121737813300015349Switchgrass PhyllosphereVYTFLLVFFDSLAGKAFLVRSIKLCLVGNQQSSGVTIVGFEFVSD*
Ga0182163_117759313300015350Switchgrass PhyllosphereMSFDSLAGKAFSARSTNLCLVDNQRSSGVVVAGFESC*
Ga0182163_125768213300015350Switchgrass PhyllosphereVYPLLLMFFDSLARKAFLVRLVKLCLVDNQWSSGVTVA*
Ga0182163_125990613300015350Switchgrass PhyllosphereFDSLVGKAFLARSIKLCLVDNQRSSGVTVAELQIVFD*
Ga0182169_115396213300015352Switchgrass PhyllosphereLAGKAFLARSIKLYLVDNQWSGGVTVAGFEFVSD*
Ga0182169_117813013300015352Switchgrass PhyllosphereCVYIFLLVFFDSLAGKAFSAMSIKLCMVDNQRSSGVTVA*
Ga0182169_126036813300015352Switchgrass PhyllosphereFLLVFFDSLAGKAFSARSIKLCLVDNQRSSGVAVAGFESC*
Ga0182179_124190313300015353Switchgrass PhyllosphereLVFFDSLAGKAFLVRSIKLCLIDNQRSGGVMVAGFEFMSD*
Ga0182179_129689823300015353Switchgrass PhyllosphereVSFDSLAGKAFSARSIKLCLVDNQRSSGVGVAGFESC*
Ga0182167_104430613300015354Switchgrass PhyllosphereRVYPFLLVFFDSLAGKAFSVRSIKLCLVDNQQSSGVMVAGLQIVSD*
Ga0182167_108384013300015354Switchgrass PhyllosphereFDSLAGKAFSARSIKLCLVDNQRSGGVTVVGFEFVSD*
Ga0182167_111736823300015354Switchgrass PhyllosphereLLVFFDSLAGKAFSARSIKLCLVDNQWSSGVAVAGFESC*
Ga0182167_116347913300015354Switchgrass PhyllosphereDSLAGKAFLARSIKLCLVDNQQNSGVTVAELRIVSD*
Ga0182167_119821913300015354Switchgrass PhyllosphereRLRVYTFLLVFFDSLAEKAFLARSIKLCLVDNQQSRGVAVAGFESC*
Ga0182167_133263613300015354Switchgrass PhyllosphereVFFDSLAGKVFLARLIKLCLVDNQRSGGVIVADFEFVSD*
Ga0182197_101834823300017408Switchgrass PhyllosphereFDSLAGKAFLARSIRLCLVDNQWSGGVTVVGFEFVSD
Ga0182199_105593923300017412Switchgrass PhyllosphereLLVFFDSLAGKAFSARSIKLCLVDNQRSGGVTVAGFEFMSD
Ga0182199_110370613300017412Switchgrass PhyllosphereVFFDSLAGKDFLARSIKLCLVDNQRSSGVMVAGLRIVS
Ga0182195_104965313300017414Switchgrass PhyllosphereDSLAGKAFSARSIKLCLIDNQWSSGVTVAGLRIVSD
Ga0182201_102818613300017422Switchgrass PhyllosphereVFFDSLAGKAFLARSIKLCLVDNQWSSGVAVAGFETC
Ga0182219_104069713300017424Miscanthus PhyllosphereFLLVLFDSLAGKAFLARSIKLCLVDNQRSSGVMVAGFESRLI
Ga0182194_111188113300017435Switchgrass PhyllosphereNFRLRVYPFLLVFFDSRAGKVFSARSIKLCLVDNQWSSGVAVVGFESC
Ga0182200_100949443300017439Switchgrass PhyllosphereSFDSLTEKVFSARSIKLCLVDNQQSSGVAVAGFESC
Ga0182200_108998623300017439Switchgrass PhyllosphereRVYHFLLMFFDSLAGKAFSARSIKLCLVDNQRSGGVMVAGFEFVSD
Ga0182200_110411123300017439Switchgrass PhyllosphereVYPFLLVFFDSLAGKAFSARSIKLCLVDNQRSGGVTVAGFEFVSD
Ga0182217_106537813300017446Switchgrass PhyllosphereICNIRLRVYIFLLVFFDSLAGKAFSARSIKLCLVDNQRSSGVTVA
Ga0182215_114673313300017447Switchgrass PhyllosphereNFRLRVSTFLLVFFDSLAGKAFLARSIKLCLVDNQRSSGVMVAGFESVSD
Ga0182216_103276923300017693Switchgrass PhyllosphereFWLVFFDSLAGKAFLARSIELCSVDNQQSSSVMVAGLQIISD
Ga0207676_1133291223300026095Switchgrass RhizosphereLRVYIFLLVFFDSLVGKAFSARSIKLCLVDNQQSSGVTVA
Ga0268322_100499023300028049PhyllosphereLLLVFFDLFAGKAFSARSIKLCLFDNKWSSGVTVA
Ga0268352_101617313300028057PhyllosphereFLLVFFDSLAGKAFSARSIKLCLVDNQRSYGVAVAGFESCMI
Ga0268320_102637213300028153PhyllosphereRLRVSTFLLVFFDSLAGKAFSARSIKLCLVDNQRSSGVTVEGLRIVSD
Ga0268320_103018313300028153PhyllosphereHSLVGKTFLARSIELCLVDNQWSSGVMVAGLRIVSD
Ga0268341_100553913300028154PhyllosphereDSLAGKAFSARSIKLYLVDNQRSGGVTVAGFEFVSD
Ga0268316_100301813300028253PhyllosphereFDSLAGKAFSVRSIKLCLVNNQRSGGVTVAGFEFMSD
Ga0268264_1010926413300028381Switchgrass RhizosphereLLVFFDALAGKAFSERSIKLCLVDNQRSYGVAVAGFESCMI
Ga0268302_10335713300028464PhyllosphereVYPFLLVFFDSLAGKAFSARSIKLCLVDNQRSGGVTVAGFEFMSD
Ga0268315_101159813300028472PhyllosphereLRVYPFLLVFFDSLAGKAFSARSIKLCLVDNQRSGGVTVAGFEFVSD
Ga0268319_101596213300028473PhyllosphereDSLARKAFSARSIKLCLVDNQRSGGVTVVGFEFVSD
Ga0268305_10312623300028525PhyllosphereLVFFDSLAGKAFSARSIKLCLVDNQRSSGVTVAGFEFVSD
Ga0268311_100571913300028529PhyllosphereFDSLAGKAFSARSIKLCLVDNQRSGGVTVAGFEFVSD
Ga0214493_113058213300032465Switchgrass PhyllospherePFLLVFFDSLAEKAFSARSIKLCLVDNQRSGGVMVAGFEFVSD
Ga0314734_106165713300032916Switchgrass PhyllospherePFLHVFFDLLAGKAFLARSIKLFLVDNQWSSGVTVAGLRIVSD
Ga0314741_104287213300032934Switchgrass PhyllosphereLVFFDSLAGKAFSARSIKLCLVDNQRSGDVTVAGFEFVSN
Ga0314759_120203513300033535Switchgrass PhyllosphereFDSLAGKAFSARSIKLCLVDNQRSGDVTVAGFEFVSD

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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