NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F104361

Metagenome / Metatranscriptome Family F104361

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F104361
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 51 residues
Representative Sequence NPTLLGTKATKKDLLEVTRMVANLNKDLVDSGYEQYQAKVEKSNDELYIISK
Number of Associated Samples 72
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 28.00 %
% of genes near scaffold ends (potentially truncated) 78.00 %
% of genes from short scaffolds (< 2000 bps) 86.00 %
Associated GOLD sequencing projects 68
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (41.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater
(62.000 % of family members)
Environment Ontology (ENVO) Unclassified
(62.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(92.000 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 57.69%    β-sheet: 0.00%    Coil/Unstructured: 42.31%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF06067DUF932 11.00
PF01467CTP_transf_like 1.00
PF05118Asp_Arg_Hydrox 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG3555Aspartyl/asparaginyl beta-hydroxylase, cupin superfamilyPosttranslational modification, protein turnover, chaperones [O] 1.00

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms74.00 %
UnclassifiedrootN/A26.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000101|DelMOSum2010_c10045123All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium TMED362257Open in IMG/M
3300003580|JGI26260J51721_1052157All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium637Open in IMG/M
3300003583|JGI26253J51717_1064438Not Available660Open in IMG/M
3300003620|JGI26273J51734_10170774All Organisms → cellular organisms → Bacteria559Open in IMG/M
3300004279|Ga0066605_10058741All Organisms → Viruses → Predicted Viral1707Open in IMG/M
3300005239|Ga0073579_1640080Not Available761Open in IMG/M
3300009079|Ga0102814_10560621All Organisms → cellular organisms → Bacteria624Open in IMG/M
3300009086|Ga0102812_10612118All Organisms → cellular organisms → Bacteria598Open in IMG/M
3300017706|Ga0181377_1033222All Organisms → Viruses → Predicted Viral1056Open in IMG/M
3300017719|Ga0181390_1184095Not Available509Open in IMG/M
3300017776|Ga0181394_1224780All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium566Open in IMG/M
3300020185|Ga0206131_10060708All Organisms → Viruses → Predicted Viral2436Open in IMG/M
3300020187|Ga0206130_10312104Not Available672Open in IMG/M
3300020595|Ga0206126_10094930Not Available1486Open in IMG/M
3300021085|Ga0206677_10078488All Organisms → Viruses → Predicted Viral1615Open in IMG/M
3300021085|Ga0206677_10092217All Organisms → Viruses → Predicted Viral1448Open in IMG/M
3300021085|Ga0206677_10153166All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium1028Open in IMG/M
3300021085|Ga0206677_10227323Not Available783Open in IMG/M
3300021185|Ga0206682_10101352All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.1428Open in IMG/M
3300021185|Ga0206682_10115215All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium1310Open in IMG/M
3300021185|Ga0206682_10290792Not Available714Open in IMG/M
3300021957|Ga0222717_10075064All Organisms → Viruses → Predicted Viral2147Open in IMG/M
3300021957|Ga0222717_10159550All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium1366Open in IMG/M
(restricted) 3300023109|Ga0233432_10141309All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.1279Open in IMG/M
(restricted) 3300023109|Ga0233432_10182488All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium TMED361065Open in IMG/M
3300023568|Ga0228696_1042501Not Available517Open in IMG/M
3300023693|Ga0232112_1003059All Organisms → Viruses → Predicted Viral1784Open in IMG/M
3300023702|Ga0232119_1007151All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium1715Open in IMG/M
3300024180|Ga0228668_1071596Not Available650Open in IMG/M
3300024180|Ga0228668_1098399Not Available520Open in IMG/M
3300024183|Ga0228603_1029476All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium792Open in IMG/M
3300024185|Ga0228669_1009961All Organisms → Viruses → Predicted Viral2471Open in IMG/M
3300024185|Ga0228669_1016527All Organisms → Viruses → Predicted Viral1781Open in IMG/M
3300024185|Ga0228669_1060052Not Available760Open in IMG/M
3300024191|Ga0228636_1040419All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium TMED361125Open in IMG/M
3300024221|Ga0228666_1018958Not Available1693Open in IMG/M
3300024226|Ga0228667_1002198All Organisms → Viruses5123Open in IMG/M
3300024226|Ga0228667_1015865All Organisms → Viruses → Predicted Viral1557Open in IMG/M
3300024226|Ga0228667_1099259Not Available544Open in IMG/M
3300024228|Ga0228633_1016272All Organisms → Viruses → Predicted Viral2089Open in IMG/M
3300024228|Ga0228633_1031323Not Available1413Open in IMG/M
3300024228|Ga0228633_1085711All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium TMED36748Open in IMG/M
3300024229|Ga0233402_1017213All Organisms → Viruses → Predicted Viral1604Open in IMG/M
3300024229|Ga0233402_1017250Not Available1602Open in IMG/M
3300024229|Ga0233402_1023595All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium1344Open in IMG/M
3300024229|Ga0233402_1026569All Organisms → Viruses → Predicted Viral1258Open in IMG/M
3300024229|Ga0233402_1042808All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium TMED36966Open in IMG/M
3300024231|Ga0233399_1045051All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium TMED361185Open in IMG/M
3300024242|Ga0228673_1010602All Organisms → Viruses → Predicted Viral1692Open in IMG/M
3300024242|Ga0228673_1026489All Organisms → Viruses → Predicted Viral1026Open in IMG/M
(restricted) 3300024264|Ga0233444_10056811All Organisms → Viruses → Predicted Viral2286Open in IMG/M
3300024266|Ga0228661_1074262All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium TMED36633Open in IMG/M
3300024267|Ga0228623_1095991Not Available535Open in IMG/M
3300024291|Ga0228660_1020895All Organisms → Viruses → Predicted Viral1236Open in IMG/M
3300024291|Ga0228660_1024053All Organisms → Viruses → Predicted Viral1150Open in IMG/M
3300024297|Ga0228658_1134199Not Available600Open in IMG/M
3300024313|Ga0228624_1083082Not Available586Open in IMG/M
3300024316|Ga0228654_1022966All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium TMED36893Open in IMG/M
3300024316|Ga0228654_1044869All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium TMED36668Open in IMG/M
3300024320|Ga0233398_1033855All Organisms → Viruses → Predicted Viral1390Open in IMG/M
3300024321|Ga0228626_1024945All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium1579Open in IMG/M
3300024328|Ga0228635_1052694All Organisms → Viruses → Predicted Viral1079Open in IMG/M
3300024335|Ga0228672_1069324Not Available1055Open in IMG/M
3300024415|Ga0228662_1049592All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium TMED361076Open in IMG/M
3300025483|Ga0209557_1020191All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium TMED362166Open in IMG/M
3300025668|Ga0209251_1006478Not Available6612Open in IMG/M
3300025705|Ga0209374_1011732All Organisms → Viruses → Predicted Viral4663Open in IMG/M
3300025705|Ga0209374_1050001All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium TMED361505Open in IMG/M
3300025870|Ga0209666_1155204All Organisms → Viruses → Predicted Viral1034Open in IMG/M
3300026443|Ga0247559_1014213All Organisms → Viruses → Predicted Viral1641Open in IMG/M
3300026453|Ga0228644_1019603All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium1411Open in IMG/M
3300026458|Ga0247578_1098889All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium573Open in IMG/M
3300026461|Ga0247600_1034199Not Available981Open in IMG/M
3300026470|Ga0247599_1050829Not Available880Open in IMG/M
3300026483|Ga0228620_1081727Not Available682Open in IMG/M
3300026503|Ga0247605_1063315All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium TMED36918Open in IMG/M
3300026505|Ga0228647_1037691All Organisms → Viruses → Predicted Viral1243Open in IMG/M
3300026513|Ga0247590_1109200All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium714Open in IMG/M
3300026513|Ga0247590_1162823Not Available570Open in IMG/M
3300027081|Ga0208954_1002731All Organisms → Viruses → Predicted Viral2932Open in IMG/M
3300028008|Ga0228674_1048220All Organisms → Viruses → Predicted Viral1624Open in IMG/M
3300028110|Ga0247584_1006019All Organisms → Viruses → Predicted Viral2548Open in IMG/M
3300028127|Ga0233401_1023113All Organisms → Viruses → Predicted Viral1616Open in IMG/M
3300028127|Ga0233401_1061868All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium TMED36898Open in IMG/M
3300028131|Ga0228642_1098077All Organisms → cellular organisms → Archaea739Open in IMG/M
3300028134|Ga0256411_1232423All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium573Open in IMG/M
3300028196|Ga0257114_1263648All Organisms → cellular organisms → Bacteria609Open in IMG/M
3300028273|Ga0228640_1047521Not Available843Open in IMG/M
3300028280|Ga0228646_1013880All Organisms → Viruses → Predicted Viral2001Open in IMG/M
3300028280|Ga0228646_1114391All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium TMED36658Open in IMG/M
3300028396|Ga0228643_1120087All Organisms → cellular organisms → Bacteria605Open in IMG/M
3300028414|Ga0228627_1112099All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium TMED36622Open in IMG/M
3300028416|Ga0228614_1017350All Organisms → Viruses → Predicted Viral1877Open in IMG/M
3300028418|Ga0228615_1105479All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium767Open in IMG/M
3300028419|Ga0228625_1008175All Organisms → Viruses → Predicted Viral2841Open in IMG/M
3300031519|Ga0307488_10281029All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium TMED361082Open in IMG/M
3300031519|Ga0307488_10397235Not Available854Open in IMG/M
3300032088|Ga0315321_10790137All Organisms → cellular organisms → Bacteria540Open in IMG/M
3300032088|Ga0315321_10849532All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium514Open in IMG/M
3300032088|Ga0315321_10863315All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium508Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater62.00%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater10.00%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine7.00%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater3.00%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine3.00%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater3.00%
Sackhole BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine2.00%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine2.00%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water2.00%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater2.00%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine1.00%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine1.00%
MarineEnvironmental → Aquatic → Marine → Inlet → Unclassified → Marine1.00%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine1.00%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000101Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010EnvironmentalOpen in IMG/M
3300003580Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_120m_DNAEnvironmentalOpen in IMG/M
3300003583Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI073_LV_100m_DNAEnvironmentalOpen in IMG/M
3300003620Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_125m_DNAEnvironmentalOpen in IMG/M
3300004279Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_10mEnvironmentalOpen in IMG/M
3300005239Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of MaineEnvironmentalOpen in IMG/M
3300009079Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.741EnvironmentalOpen in IMG/M
3300009086Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.713EnvironmentalOpen in IMG/M
3300017706Marine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaGEnvironmentalOpen in IMG/M
3300017719Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21EnvironmentalOpen in IMG/M
3300017776Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 17 SPOT_SRF_2010-11-23EnvironmentalOpen in IMG/M
3300020185Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1EnvironmentalOpen in IMG/M
3300020187Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160512_1EnvironmentalOpen in IMG/M
3300020595Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160412_1EnvironmentalOpen in IMG/M
3300021085Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015EnvironmentalOpen in IMG/M
3300021185Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015EnvironmentalOpen in IMG/M
3300021957Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18DEnvironmentalOpen in IMG/M
3300023109 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MGEnvironmentalOpen in IMG/M
3300023568Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 84R (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300023693Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 29R (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300023702Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 82R (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024180Seawater microbial communities from Monterey Bay, California, United States - 82DEnvironmentalOpen in IMG/M
3300024183Seawater microbial communities from Monterey Bay, California, United States - 3DEnvironmentalOpen in IMG/M
3300024185Seawater microbial communities from Monterey Bay, California, United States - 84DEnvironmentalOpen in IMG/M
3300024191Seawater microbial communities from Monterey Bay, California, United States - 45DEnvironmentalOpen in IMG/M
3300024221Seawater microbial communities from Monterey Bay, California, United States - 80DEnvironmentalOpen in IMG/M
3300024226Seawater microbial communities from Monterey Bay, California, United States - 81DEnvironmentalOpen in IMG/M
3300024228Seawater microbial communities from Monterey Bay, California, United States - 41DEnvironmentalOpen in IMG/M
3300024229Seawater microbial communities from Monterey Bay, California, United States - 54DEnvironmentalOpen in IMG/M
3300024231Seawater microbial communities from Monterey Bay, California, United States - 43DEnvironmentalOpen in IMG/M
3300024242Seawater microbial communities from Monterey Bay, California, United States - 91DEnvironmentalOpen in IMG/M
3300024264 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_10_MGEnvironmentalOpen in IMG/M
3300024266Seawater microbial communities from Monterey Bay, California, United States - 75DEnvironmentalOpen in IMG/M
3300024267Seawater microbial communities from Monterey Bay, California, United States - 28DEnvironmentalOpen in IMG/M
3300024291Seawater microbial communities from Monterey Bay, California, United States - 74DEnvironmentalOpen in IMG/M
3300024297Seawater microbial communities from Monterey Bay, California, United States - 71DEnvironmentalOpen in IMG/M
3300024313Seawater microbial communities from Monterey Bay, California, United States - 29DEnvironmentalOpen in IMG/M
3300024316Seawater microbial communities from Monterey Bay, California, United States - 66DEnvironmentalOpen in IMG/M
3300024320Seawater microbial communities from Monterey Bay, California, United States - 38DEnvironmentalOpen in IMG/M
3300024321Seawater microbial communities from Monterey Bay, California, United States - 31DEnvironmentalOpen in IMG/M
3300024328Seawater microbial communities from Monterey Bay, California, United States - 44DEnvironmentalOpen in IMG/M
3300024335Seawater microbial communities from Monterey Bay, California, United States - 90DEnvironmentalOpen in IMG/M
3300024415Seawater microbial communities from Monterey Bay, California, United States - 76DEnvironmentalOpen in IMG/M
3300025483Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_120m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025668Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI073_LV_100m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025705Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_10m (SPAdes)EnvironmentalOpen in IMG/M
3300025870Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_125m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300026443Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 4R (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300026453Seawater microbial communities from Monterey Bay, California, United States - 56DEnvironmentalOpen in IMG/M
3300026458Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 36R (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300026461Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 75R (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300026470Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 73R (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300026483Seawater microbial communities from Monterey Bay, California, United States - 23DEnvironmentalOpen in IMG/M
3300026503Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 91R (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300026505Seawater microbial communities from Monterey Bay, California, United States - 59DEnvironmentalOpen in IMG/M
3300026513Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 51R (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300027081Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C33A6_35 (SPAdes)EnvironmentalOpen in IMG/M
3300028008Seawater microbial communities from Monterey Bay, California, United States - 1D_rEnvironmentalOpen in IMG/M
3300028110Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 43R (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300028127Seawater microbial communities from Monterey Bay, California, United States - 49DEnvironmentalOpen in IMG/M
3300028131Seawater microbial communities from Monterey Bay, California, United States - 53DEnvironmentalOpen in IMG/M
3300028134Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - WCR_12 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300028196Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_10mEnvironmentalOpen in IMG/M
3300028273Seawater microbial communities from Monterey Bay, California, United States - 51DEnvironmentalOpen in IMG/M
3300028280Seawater microbial communities from Monterey Bay, California, United States - 58DEnvironmentalOpen in IMG/M
3300028396Seawater microbial communities from Monterey Bay, California, United States - 55DEnvironmentalOpen in IMG/M
3300028414Seawater microbial communities from Monterey Bay, California, United States - 33DEnvironmentalOpen in IMG/M
3300028416Seawater microbial communities from Monterey Bay, California, United States - 15DEnvironmentalOpen in IMG/M
3300028418Seawater microbial communities from Monterey Bay, California, United States - 16DEnvironmentalOpen in IMG/M
3300028419Seawater microbial communities from Monterey Bay, California, United States - 30DEnvironmentalOpen in IMG/M
3300031519Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2EnvironmentalOpen in IMG/M
3300032088Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 21515EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2010_1004512313300000101MarineMKLENNPNNPTLLGTKATKKDLLEVTRMVANLNRDLIDSGYEQYQAKVEKSNDELYIISK
JGI26260J51721_105215723300003580MarineMKLVNNPSNPTLLGTKATKKDLLEVTRMVXNLNKDLVDSGYEQYXAXVEKSNDXXYIXSK
JGI26253J51717_106443813300003583MarineMKLVNNPSNPTLLGTKATKKDLLEVTRMVANLNKDLVDSGYEQYQAKVEKSNDELYIISK
JGI26273J51734_1017077413300003620MarineMKLVNNPSNPTLLGTKATKKDLLEVTRMVANLNKDLVDSGYEQYQAKVEKSND
Ga0066605_1005874123300004279MarineMKLVNNPSNPTLLGTKATKKDLLEVTRMVANLNKDLVDSGYEQYQARVEKSNDAIYILSK
Ga0073579_164008023300005239MarineMKLENNPNNPTLLGTKATKKDLLEVTRMVTNLNKDLVDSGYEQYQARVEKSNDELYIISK
Ga0102814_1056062113300009079EstuarineLLGTKATKKDLLEVTRMVANLNKDLVDSGYEQYQARVEKSNDELYILTK*
Ga0102812_1061211823300009086EstuarineLGTKATKKDLLEVTRMVANLNKDLVDSGYEQYQARVEKSNDELYILTK*
Ga0181377_103322223300017706MarineMKLENNPNNPTLLGTKATKKDLLEVTRMVANLNKDLVDSGYEQYQARVEKSNDSIYILSK
Ga0181390_118409513300017719SeawaterATKKDLLEVTRMVANLNKDLVDSGYEQYQARVEKSNDSIYILSK
Ga0181394_122478023300017776SeawaterMKLVNNPSNPTLLGTKATKKDLLEVARMVENLNRDLIDSGYEQYQAKVEKSNDELYIISK
Ga0206131_1006070813300020185SeawaterMKLVNNPSNPTLLGTKATKKDLLEVARMVENLNRDLIDSGYEQYQAKVEKSNDELYILSK
Ga0206130_1031210423300020187SeawaterKKDLLEVARMVENLNRDLIDSGYEQYQARVEKSNDAIYILSK
Ga0206126_1009493023300020595SeawaterPTLLGTKATKKDLLEVARMVENLNRDLIDSGYEQYQARVEKSNDAIYILSK
Ga0206677_1007848833300021085SeawaterMKLVNNPSNPTLLGTKATKKDLLEVARMVENLNRDLIDSGYEQYQARVEKSNDELYILSK
Ga0206677_1009221723300021085SeawaterMKLVNNPSNPTLLGTKATKKDLLEVTRMVANLNKDLVDSGYEQYQARVEKSNDELYIISK
Ga0206677_1015316613300021085SeawaterLGTKATKKDLLEVARMVENLNRDLIDSGYEQYQARVEKSNDELYIISK
Ga0206677_1022732313300021085SeawaterLGTKATKKDLLEVARMVENLNRDLIDSGYEQYQARVEKSNDAIYILSK
Ga0206682_1010135213300021185SeawaterLLGTKATKKDLLEVARMVENLNRDLIDSGYEQYQARVEKSNDELYILSK
Ga0206682_1011521513300021185SeawaterKATKKDLLEVARMVENLNRDLIDSGYEQYQARVEKSNDELYIISK
Ga0206682_1029079213300021185SeawaterLLGTKATKKDLLEVARMVENLNRDLIDSGYEQYQARVEKSNDAIYILSK
Ga0222717_1007506413300021957Estuarine WaterLVNNPSNPTLLGTKATKKDLLEVTRMVANLNKDLVDSGYEQYQAKVEKSNDELYILTK
Ga0222717_1015955033300021957Estuarine WaterVNNPNNPTLLGTKATKKDLLEVARMVENLNRDLIDSGYEQYQARVEKSNDELYIISK
(restricted) Ga0233432_1014130913300023109SeawaterEVTRMVANLNKDLVDSGYEQYQAKVEKSNDELYIISK
(restricted) Ga0233432_1018248813300023109SeawaterLLEVTRMVANLNKDLVDSGYEQYQAKVEKSNDELYILTK
Ga0228696_104250123300023568SeawaterMKLVNNPSNPTLLGTKATKKDLLEVTRMVANLNKDLVDSGYEQYQAKVEKSNDELYITSK
Ga0232112_100305923300023693SeawaterMKLVNNPNNPTLLGTKATKKDLLEVARMVENLNRDLIDSGYEQYQARVEKSNDELYIISK
Ga0232119_100715123300023702SeawaterMKLVNNPSNPTLLGTKATKKDLLEVTRMVENLNRDLIDSGYEQYQARVEKSNDELYIISK
Ga0228668_107159623300024180SeawaterTLLGTKATKKDLLEVTRMVANLNKDLVDSGYEQYQARVEKSNDSIYILSK
Ga0228668_109839923300024180SeawaterGTKATKKDLLEVTRMVANLNKDLVDSGYEQYQAKVEKSNDELYIISK
Ga0228603_102947623300024183SeawaterKDLLEVTRMVENLNRDLIDSGYEQYQARVEKSNDELYIISK
Ga0228669_100996123300024185SeawaterMKLVNNPNNPTLLGTKATKKDLLEVARMVENLNRDLIDSGYEQYQARVEKSNDAIYILSK
Ga0228669_101652733300024185SeawaterMKLVNNPSNPTLLGTKATKKDLLEVTRMVANLNKDLVDSGYEQYQARVEKSNDSIYILSK
Ga0228669_106005223300024185SeawaterPSNPTLLGTKATKKDLLEVTRMVANLNKDLVDSGYEQYQAKVEKSNDELYIISK
Ga0228636_104041923300024191SeawaterMKLVNNPSNPTLLGTKATKKDLLEVTRMVENLNRDLIDSGYEQYQAKVEKSNDELYILTK
Ga0228666_101895813300024221SeawaterLLGTKATKKDLLEVTRMVANLNKDLVDSGYEQYQARVEKSNDSIYILSK
Ga0228667_100219873300024226SeawaterNPTLLGTKATKKDLLEVARMVENLNRDLIDSGYEQYQARVEKSNDELYIISK
Ga0228667_101586543300024226SeawaterMKLVNNPNNPTLLGTKATKKDLLEVARMVENLNRDLIDSGYEQYQARVEK
Ga0228667_109925923300024226SeawaterNNPSNPTLLGTKATKKDLLEVTRMVANLNKDLVDSGYEQYQAKVEKSNDELYIISK
Ga0228633_101627213300024228SeawaterLEVTRMVANLNKDLVDSGYEQYQAKVEKSNDELYILTK
Ga0228633_103132313300024228SeawaterLGTKATKKDLLEVTRMVANLNKDLVDSGYEQYQARVEKSNDSIYILSK
Ga0228633_108571123300024228SeawaterKDLLEVARMVENLNRDLIDSGYEQYQARVEKSNDELYILSK
Ga0233402_101721313300024229SeawaterKATKKDLLEVTRMVANLNKDLVDSGYEQYQAKVEKSNDELYIISK
Ga0233402_101725023300024229SeawaterLVNNPSNPTLLGTKATKKDLLEVTRMVANLNKDLVDSGYEQYQARVEKSNDSIYILSK
Ga0233402_102359533300024229SeawaterLLGTKATKKDLLEVARMVENLNRDLIDSGYEQYQARVEKSNDELYIISK
Ga0233402_102656913300024229SeawaterLGTKATKKDLLEVARMVENLNRDLIDSGYEQYQARVEKSNDELYILTK
Ga0233402_104280823300024229SeawaterKATKKDLLEVTRMVANLNKDLVDSGYEQYQAKVEKSNDELYILTK
Ga0233399_104505133300024231SeawaterMKLVNNPSNPTLLGTKATKKDLLEVTRMVANLNKDLVDSGYEQYQARVEKSNDELYILTK
Ga0228673_101060213300024242SeawaterLEVTRMVENLNRDLIDSGYEQYQARVEKSNDELYIISK
Ga0228673_102648923300024242SeawaterTKKDLLEVARMVENLNRDLIDSGYEQYQARVEKSNDELYILTK
(restricted) Ga0233444_1005681113300024264SeawaterVNNPSNPTLLGTKATKKDLLEVTRMVANLNKDLVDSGYEQYQAKVEKSNDAIYILSK
Ga0228661_107426213300024266SeawaterTKKDLLEVTRMVANLNKDLVDSGYEQYQAKVEKSNDELYILTK
Ga0228623_109599123300024267SeawaterTKKDLLEVTRMVANLNKDLVDSGYEQYQARVEKSNDELYIISK
Ga0228660_102089513300024291SeawaterLLGTKATKKDLLEVARMVENLNRDLIDSGYEQYQARVEKSNDELYILTK
Ga0228660_102405313300024291SeawaterLVNNPSNPTLLGTKATKKDLLEVTRMVANLNKDLVDSGYEQYQAKVEKSNDELYIISK
Ga0228658_113419913300024297SeawaterKLVNNPNNPTLLGTKATKKDLLEVARMVENLNRDLIDSGYEQYQARVEKSNDAIYILSK
Ga0228624_108308213300024313SeawaterSNPTLLGTKATKKDLLEVTRMVANLNKDLVDSGYEQYQAKVEKSNDELYIISK
Ga0228654_102296623300024316SeawaterPSNPTLLGTKATKKDLLEVTRMVENLNRDLIDSGYEQYQAKVEKSNDELYILTK
Ga0228654_104486923300024316SeawaterLLGTKATKKDLLEVTRMVANLNKDLVDSGYEQYQAKVEKSNDELYILTK
Ga0233398_103385523300024320SeawaterNPTLLGTKATKKDLLEVTRMVANLNKDLVDSGYEQYQARVEKSNDSIYILSK
Ga0228626_102494533300024321SeawaterKKMKLVNNPSNPTLLGTKATKKDLLEVTRMVENLNRDLIDSGYEQYQARVEKSNDELYIISK
Ga0228635_105269413300024328SeawaterTKATKKDLLEVTRMVANLNKDLVDSGYEQYQAKVEKSNDELYIISK
Ga0228672_106932413300024335SeawaterATKKDLLEVARMVENLNRDLIDSGYEQYQARVEKSNDAIYILSK
Ga0228662_104959223300024415SeawaterMKLVNNPSNPTLLGTKATKKDLLEVARMVENLNRDLIDSGYEQYQARVEKSNDELYILTK
Ga0209557_102019133300025483MarineKDLLEVTRMVANLNKDLVDSGYEQYQAKVEKSNDELYILTK
Ga0209251_1006478113300025668MarineMKLVNNPSNPTLLGTKATKKDLLEVTRMVANLNKDLVDSGYEQYQAKVEKSNDAIYILSK
Ga0209374_101173263300025705MarineLLEVTRMVTNLNKDLVDSGYEQYQARVEKSNDAIYILSK
Ga0209374_105000113300025705MarineNPTLLGTKATKKDLLEVTRMVTNLNKDLVDSGYEQYQAKVEKSNDELYIISK
Ga0209666_115520423300025870MarineVNNPSNPTLLGTKATKKDLLEVTRMVANLNKDLVDSGYEQYQAKVEKSNDELYIISK
Ga0247559_101421333300026443SeawaterMKLVNNPSNPTLLGTKATKKDLLEVARMVENLNRDLIDSGYEQYQARVEKSNDELYIISK
Ga0228644_101960313300026453SeawaterDLLEVARMVENLNRDLIDSGYEQYQARVEKSNDELYIISK
Ga0247578_109888913300026458SeawaterARMVENLNRDLIDSGYEQYQARVEKSNDELYIISK
Ga0247600_103419913300026461SeawaterMKLVNNPSNPTLLGTKATKKDLLEVARMVENLNRDLIDSGYEQYQARVEKSNDAIYILSK
Ga0247599_105082913300026470SeawaterKKMKLVNNPSNPTLLGTKATKKDLLEVTRMVANLNKDLVDSGYEQYQAKVEKSNDELYIISK
Ga0228620_108172713300026483SeawaterKATKKDLLEVTRMVANLNKDLVDSGYEQYQAKVEKSNDELYITSK
Ga0247605_106331513300026503SeawaterSNPTLLGTKATKKDLLEVTRMVANLNKDLVDSGYEQYQARVEKSNDELYILTK
Ga0228647_103769133300026505SeawaterEKKMKLVNNPSNPTLLGTKATKKDLLEVTRMVENLNRDLIDSGYEQYQAKVEKSNDELYILTK
Ga0247590_110920013300026513SeawaterTKATKKDLLEVARMVENLNRDLIDSGYEQYQARVEKSNDELYIISK
Ga0247590_116282313300026513SeawaterKDLLEVARMVENLNRDLIDSGYEQYQARVEKSNDAIYILSK
Ga0208954_100273113300027081MarineNNPTLLGTKATKKDLLEVARMVENLNRDLIDSGYEQYQARVEKSNDAIYILSK
Ga0228674_104822023300028008SeawaterNPTLLGTKATKKDLLEVTRMVANLNKDLVDSGYEQYQAKVEKSNDELYIISK
Ga0247584_100601923300028110SeawaterMKLVNNPSNPTLLGTKATKKDLLEVTRMVANLNKDLVDSGYEQYQAKVEKSNDELYILTK
Ga0233401_102311313300028127SeawaterTLLGTKATKKDLLEVTRMVANLNKDLVDSGYEQYQAKVEKSNDELYIISK
Ga0233401_106186813300028127SeawaterVNNPSNPTLLGTKATKKDLLEVTRMVENLNRDLIDSGYEQYQARVEKSNDELYILSK
Ga0228642_109807723300028131SeawaterNPSNPTLLGTKATKKDLLEVTRMVANLNKDLVDSGYEQYQAKVEKSNDELYIISK
Ga0256411_123242313300028134SeawaterNNPNNPTLLGTKATKKDLLEVARMVENLNRDLIDSGYEQYQARVEKSNDELYIISK
Ga0257114_126364823300028196MarineTKATKKDLLEVTRMVANLNKDLVDSGYEQYQARVEKSNDELYILTK
Ga0228640_104752113300028273SeawaterSNPTLLGTKATKKDLLEVARMVENLNRDLIDSGYEQYQARVEKSNDAIYILSK
Ga0228646_101388063300028280SeawaterMKLVNNPSNPTLLGTKATKKDLLEVARMVENLNRDLIDSGYEQYQARVEKSNDAIYIL
Ga0228646_111439113300028280SeawaterATKKDLLEVTRMVANLNKDLVDSGYEQYQAKVEKSNDELYILTK
Ga0228643_112008713300028396SeawaterDLLEVARMVENLNRDLIDSGYEQYQARVEKSNDELYILTK
Ga0228627_111209923300028414SeawaterKKDLLEVTRMVANLNKDLVDSGYEQYQAKVEKSNDELYILTK
Ga0228614_101735013300028416SeawaterPSNPTLLGTKATKKDLLEVTRMVANLNKDLVDSGYEQYQARVEKSNDSIYILSK
Ga0228615_110547923300028418SeawaterMKLVNNPNNPTLLGTKATKKDLLEVARMVENLNRDLIDSGYEQYQARVEKSNDAIYILS
Ga0228625_100817513300028419SeawaterKMKLVNNPNNPTLLGTKATKKDLLEVARMVENLNRDLIDSGYEQYQARVEKSNDELYIIS
Ga0307488_1028102933300031519Sackhole BrinePTNPTLLGTKATKKDLLEVTRMVTNLNKDLVDSGYEQYQARVEKSNDELYIISK
Ga0307488_1039723513300031519Sackhole BrineATKKDLLEVTRMVTNLNKDLVDSGYEQYQAKVEKSNDAIYILSK
Ga0315321_1079013723300032088SeawaterMKLVNNPSNPTLLGTKATKKDLLEVARMVENLNRDLIDSGYEQYQARVEKSNDELYILS
Ga0315321_1084953223300032088SeawaterNPNNPTLLGTKATKKDLLEVTRMVENLNRDLIDSGYEQYQAKVEKSNDELYIISK
Ga0315321_1086331523300032088SeawaterMKLVNNPSNPTLLGTKATKKDLLEVTRMVENLNRDLIDSGYEQYQARVEKSNDELYIL

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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