Metagenome Family F104687

Basic Information
Family ID	F104687
Family Type	Metagenome
Number of Sequences	100
Average Sequence Length	47 residues
Representative Sequence	AMGSIAQVAVNTEQAVLQTRKTVEDLVKLADELTRSLSRFKLAAA
Number of Associated Samples	95
Number of Associated Scaffolds	100

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (100.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (16.000 % of family members)
Environment Ontology (ENVO)	Unclassified (23.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (45.000 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 86.67% β-sheet: 0.00% Coil/Unstructured: 13.33%
Feature Viewer

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Pfam ID	Name	% Frequency in 100 Family Scaffolds
PF01627	Hpt	79.00
PF02895	H-kinase_dim	13.00
PF02771	Acyl-CoA_dh_N	1.00
PF07277	SapC	1.00
PF00672	HAMP	1.00
PF00072	Response_reg	1.00
PF00015	MCPsignal	1.00
PF01739	CheR	1.00
PF17203	sCache_3_2	1.00

COG ID	Name	Functional Category	% Frequency in 100 Family Scaffolds
COG0643	Chemotaxis protein histidine kinase CheA	Signal transduction mechanisms [T]	26.00
COG0840	Methyl-accepting chemotaxis protein (MCP)	Signal transduction mechanisms [T]	2.00
COG1352	Methylase of chemotaxis methyl-accepting proteins	Signal transduction mechanisms [T]	2.00
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	1.00
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	1.00

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	76.00%
Host-Associated	Host-Associated	23.00%
Engineered	Engineered	1.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	68.00%
Plants	Host-Associated → Plants	23.00%
Aquatic	Environmental → Aquatic	8.00%
Bioremediation	Engineered → Bioremediation	1.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	68.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere	16.00%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.00%
Sediment	Environmental → Aquatic → Sediment	5.00%
Freshwater	Environmental → Aquatic → Freshwater	2.00%
Marine	Environmental → Aquatic → Marine	1.00%
Metal	Engineered → Bioremediation → Metal	1.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	57.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	16.00%
Loam	Environmental → Terrestrial → Soil → Loam	10.00%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.00%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.00%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.00%
Lake	Environmental → Aquatic → Freshwater → Lake	1.00%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.00%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.00%
Unclassified	Engineered → Bioremediation → Metal → Unclassified	1.00%

Habitat	Taxonomy	Distribution
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	20.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	16.00%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	7.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.00%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.00%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.00%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.00%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.00%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.00%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.00%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	1.00%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.00%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.00%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.00%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	1.00%
Unclassified	Engineered → Bioremediation → Metal → Unclassified → Unclassified	1.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	16.00%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	11.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	7.00%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.00%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.00%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	4.00%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.00%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.00%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.00%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.00%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.00%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	2.00%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.00%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.00%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.00%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.00%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.00%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.00%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.00%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.00%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment	1.00%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.00%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	1.00%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.00%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	1.00%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.00%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.00%
Sediment Slurry	Engineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry	1.00%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2065487018	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004013	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D2	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010391	Freshwater sediment microbial communities from Lake Superior, USA - Station SU-17. Combined Assembly of Gp0155404, Gp0155335, Gp0155336, Gp0155336, Gp0155403, Gp0155406	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011441	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT513_2	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012225	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT860_2	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012899	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300021081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redo	Environmental	Open in IMG/M
3300021972	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2m2	Environmental	Open in IMG/M
3300025322	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_1 (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026044	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailB_D1 (SPAdes)	Environmental	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026313	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026342	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)	Environmental	Open in IMG/M
3300026524	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)	Environmental	Open in IMG/M
3300026532	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)	Environmental	Open in IMG/M
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental	Open in IMG/M
3300027637	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200 (SPAdes)	Environmental	Open in IMG/M
3300027654	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028590	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day30	Environmental	Open in IMG/M
3300028809	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300030620	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT147D111	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300034692	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A1A0.3	Engineered	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPINP_03991340	2065487018	Soil	AVHTEQAVLQTRRTVDDLVKLADELTRSLSRFKLATN
Ga0055465_101010201	3300004013	Natural And Restored Wetlands	AELAQGISRTSAQQADGVEGVARAMHSIAAVAVETEQAVLQTRKTAEDLVKLADELTRSLSRFKLAAA*
Ga0062591_1011105802	3300004643	Soil	QVAVGTEQAVLQTRKTVEDLVKLADELTRSLSRFKLAAA*
Ga0062594_1008665551	3300005093	Soil	RAMQSIAQVAVNTEQAVLQTRKTVEDLVKLADELTRSLARFKLATA*
Ga0066673_104150551	3300005175	Soil	SAEQVDGAEGVARAMQSIAQVAVHTEQAVLQTRKTVEDLVKLADELTRSLARFKLASA*
Ga0066688_107260802	3300005178	Soil	IADVAVHTEQAVLQTRRTVDDLVKLADELTRSLSRFKLATN*
Ga0066685_104478851	3300005180	Soil	VRGADGVVRAMRSIADVAVHTEQAVLQTRRTVDDLVKLADELTRSLSRFKLATT*
Ga0066685_104759961	3300005180	Soil	ISRASAEQVDGAEGVARAMQSIAQVAVHTEQAVLQTRKTVEDLVKLADELTRSLARFKLASA*
Ga0066676_100993842	3300005186	Soil	VEGAARAMQSIAHVAVSTEQAVLQTRKTVEDLVKLADELSRSLARFKLATA*
Ga0066675_105566751	3300005187	Soil	MRSIADVAVHTEQAVLQTRRTVDDLVKLADELTRSLSRFKLATN*
Ga0070690_1006713351	3300005330	Switchgrass Rhizosphere	AEQVRGVEGVARAMGSIAQVAVNTEQAVLQTRKTVEDLVKLADELTRSLSRFKLAAA*
Ga0070680_1017282091	3300005336	Corn Rhizosphere	AMGSIAQVAVNTEQAVLQTRKTVEDLVKLADELTRSLSRFKLAAA*
Ga0070691_106388741	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	QVAVNTEQAVLQTRKTVEDLVKLADELTRSLSRFKLATA*
Ga0068867_1003859471	3300005459	Miscanthus Rhizosphere	EGVEGVARAMQSIAQVAVNTEQAVLQTRKTVEDLVKLADELTRSLARFKLATA*
Ga0070696_1005404121	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	EGVARAMHSIAQVAVNTEQAVLQTRKTVEDLVKLADELTRSLSRFKLATA*
Ga0066661_102523942	3300005554	Soil	SIADVAVHTEQAVLQTRRTVDDLVKLADELTRSLSRFKLATN*
Ga0066704_101744381	3300005557	Soil	AVHTEQAVLQTRRTVDDLVKLADELTRSLSRFKLATN*
Ga0066700_110450552	3300005559	Soil	QVRGADGVVRAMRSIAEVAVHTEQAVLQTRRTVDDLVKLADELTRSLSRFKLATT*
Ga0066694_105412712	3300005574	Soil	TAMQSIASVAVHTEQAVLQTRKTVEDLVKLADELTRSLARFKLAV*
Ga0066905_1003773061	3300005713	Tropical Forest Soil	EVAVHTEQAVLQTRRTVDDLVKLADELTRSLSRFKLATS*
Ga0068862_1006591121	3300005844	Switchgrass Rhizosphere	GVARAMGSIAQVAVNTEQAVLQTRKTVEDLVKLADELTRSLSRFKLAAA*
Ga0068862_1022619482	3300005844	Switchgrass Rhizosphere	MSTSSAELAQGMSRTSAQQADGVEGVARAMHSIAQVAVNTEQAVLQTRRTVEDLVKLADELTRSLSRFKLATA*
Ga0066651_106961491	3300006031	Soil	VEGVEGVARAMASIAQVAVNTEQAVLQTRKTVEDLVKLADELTRSLARFKLATA*
Ga0079220_116189942	3300006806	Agricultural Soil	GADGVAAAMRSIAQVAVHTEQAVLQTRRTVDDLAKVADELTRSLSRFKLATT*
Ga0075421_1019965661	3300006845	Populus Rhizosphere	SVAVRTEQAVLQTRKTVEDLVKLADELTRSLSRFKLAG*
Ga0075430_1002817802	3300006846	Populus Rhizosphere	AEGVATAMRSIAQIAVHTEQAVLQTRRTVDDLVKVADELSQSLSRFKLASA*
Ga0075431_1010443971	3300006847	Populus Rhizosphere	QVAVHTEQAVLQTRRTVDDLVKVADELTRSLSRFKLATA*
Ga0075420_1009280991	3300006853	Populus Rhizosphere	RAMHSIAQVAVNTEQAVLQTRKTVEDLVKLADELTRSLSRFKLAA*
Ga0075434_1026105461	3300006871	Populus Rhizosphere	AQGISRASAEQVDGVEGAARAMQSIAHVAVSTEQAVLQTRKTVEDLVKLADELTRSLARFKLATA*
Ga0079217_104873112	3300006876	Agricultural Soil	EEISGVTQEQVRGADGVATAMRSIAQVAVHTEQAVLQTRRTVDDLVKVADELTRSLSRFKLATA*
Ga0075436_1000221764	3300006914	Populus Rhizosphere	AVNTEQAVLQTRKTVEDLVKLADELTRSLARFKLATA*
Ga0075419_107037962	3300006969	Populus Rhizosphere	DGVVRAMRSIAEVAVHTEQAVLQTRRTVDDLVKLADELTRSLSRFKLATH*
Ga0075435_1000449873	3300007076	Populus Rhizosphere	ALGSEGAATAMRSIAKVAVQTEQAVLQARRTVTDLVKLADELTSTLARFTLAT*
Ga0099791_103464121	3300007255	Vadose Zone Soil	SRASAEQVDGAEGVARAMQSIAQVAVHTEQAVLQTRKTVEDLVKLADELTRSLARFKLAV
Ga0066710_1005128431	3300009012	Grasslands Soil	RSIADVAVHTEQAVLQTRRTVDDLVKLADELTRSLSRFKLATN
Ga0066710_1048126272	3300009012	Grasslands Soil	MQSIAKVAVQTEQAVLQARKTVTDLVKLADELTSTLARFQLAT
Ga0075418_127495702	3300009100	Populus Rhizosphere	AVQTEQGVLQTRRTVDELVKLADTLQASLERFKLTA*
Ga0075423_110692072	3300009162	Populus Rhizosphere	VAQQTEQGVLRTRRTVDDLVRLAEQLTASLSRFKLPG*
Ga0105242_127884232	3300009176	Miscanthus Rhizosphere	GVEGVARAMHSIAQVAVNTEQAVLQTRRTVEDLVKLADELTRSLSRFKLATA*
Ga0134109_102598832	3300010320	Grasslands Soil	SIADVAVHTEQAVLQTRRTVDDLVKLADELTRSLSRFKLATT*
Ga0134062_100733961	3300010337	Grasslands Soil	QVRGADGVVRAMRSIADVAVHTEQAVLQTRRTVDDLVKLADELTRSLSRFKLATT*
Ga0136847_122048132	3300010391	Freshwater Sediment	ELAQGISRTSAQQADGVEGVAKAMHSIAQVAVDTEQAVLQTRKTVEDLVKLADELTRSLSRFKLATA*
Ga0134124_121161952	3300010397	Terrestrial Soil	AVQAIAGVALQTEQGVLQTRKTVDDLVRLAQELTRVLSRFKLET*
Ga0126383_101373912	3300010398	Tropical Forest Soil	VRGADGVVRAMRSIAEVAVHTEQAVLQTRRTVDDLVKLADELTRSLSRFKLATS*
Ga0134127_118036401	3300010399	Terrestrial Soil	AMQSIATVAVQTEQGVLQTRRTVDELVKLADTLQTSLERFKLTA*
Ga0137452_10162912	3300011441	Soil	GVALQTEQGVLQTRKTVEDLVRLAQELTHTLSRFKLAA*
Ga0137399_116166181	3300012203	Vadose Zone Soil	RSIADVAVHTEQAVLQTRRTVDDLVKLADELTRSLSRFKLATN*
Ga0137434_10463111	3300012225	Soil	QAIAGVALQTEQGVLQTRKTVEDLVRLAQELTQTLSRFKLAA*
Ga0137397_104586772	3300012685	Vadose Zone Soil	VHTEQAVLQTRRTVDDLVKLADELTRSLSRFKLATN*
Ga0157299_101842541	3300012899	Soil	VQAIAGVALQTEQGVLQTRKTVDDLVRLAQELTRVLSRFKLET*
Ga0137396_107334932	3300012918	Vadose Zone Soil	DVAVHTEQAVLQTRRTVDDLVKLADELTRSLSRFKLATN*
Ga0137419_118747171	3300012925	Vadose Zone Soil	VAVHTEQAVLQTRRTVDDLVKLADELTRSLSRFKLATN*
Ga0126369_107948871	3300012971	Tropical Forest Soil	MRSIAEVAVHTEQAVLQTRRTVDDLVKLADELTRSLSRFKLATN*
Ga0134077_101033061	3300012972	Grasslands Soil	TEQAVLQTRRTVDDLVKLADELTRSLSRFKLATH*
Ga0157373_111501021	3300013100	Corn Rhizosphere	VNTEQAVLQTRKTVEDLVKLADELTRSLSRFKLAAA*
Ga0184621_103270322	3300018054	Groundwater Sediment	RSRRVRLVAVDTEQAVLQTRKTVEDLVKLADELTRSLSRFKLATA
Ga0184618_101847551	3300018071	Groundwater Sediment	VGVAVQAIAGVALQTEQGVLQTRKTVEDLVRLAQELTQTLSRFKLSA
Ga0184629_101326751	3300018084	Groundwater Sediment	IAQVAVDTEQAVLQTRKTVEDLVKLADELTRSLSRFKLATA
Ga0066667_104224641	3300018433	Grasslands Soil	ARAMQSIAHVAVSTEQAVLQTRKTVEDLVKLADELSRSLARFKLATA
Ga0210379_105387462	3300021081	Groundwater Sediment	SIAQVAVHTEQAVLQTRRTVDDLVKVADELTRSLSRFKLATA
Ga0193737_10093852	3300021972	Soil	AIAGVALQTEQGVLQTRKTVEDLVRLAQELTETLSRFKLAA
Ga0209641_102752431	3300025322	Soil	IASVAVQTEQGVLQTRKTVDELSRLAEELTSNLARFKLAAA
Ga0207660_113911581	3300025917	Corn Rhizosphere	HGSEGVATAMGSIAKVAVQTEEAVLQARRTVMDLVKLADELTSTLARFKLAA
Ga0207709_111530981	3300025935	Miscanthus Rhizosphere	AGVALQTEQGVLQTRKTVEDLVRLAQELTQTLSRFKLAA
Ga0207670_103302902	3300025936	Switchgrass Rhizosphere	QSIAQVAVNTEQAVLQTRKTVEDLVKLADELTRSLARFKLATA
Ga0207689_117420751	3300025942	Miscanthus Rhizosphere	QVAVNTEQAVLQTRKTVEDLVKLADELTRSLARFKLATA
Ga0207640_103223501	3300025981	Corn Rhizosphere	MHSIAQVAVNTEQAVLQTRKTVEDLVKLADELTRSLSRFKLAAA
Ga0208287_10177022	3300026044	Natural And Restored Wetlands	QVAVHTEQAVLQTRRTVDDLVKVADELTRSLSRFKLATA
Ga0207648_103806292	3300026089	Miscanthus Rhizosphere	EGVEGVARAMQSIAQVAVNTEQAVLQTRKTVEDLVKLADELTRSLARFKLATA
Ga0209761_11160162	3300026313	Grasslands Soil	DVAVHTEQAVLQTRRTVDDLVKLADELTRSLSRFKLATT
Ga0209470_10970651	3300026324	Soil	VEGAARAMQSIAHVAVSTEQAVLQTRKTVEDLVKLADELSRSLARFKLATA
Ga0209057_11445791	3300026342	Soil	EQVDGVEGAARAMQSIAHVAVSTEQAVLQTRKTVEDLVKLADELSRSLARFKLATA
Ga0209690_12711202	3300026524	Soil	GISRASAQQVEGVEGVARAMSSIAQVAVNTEQAVLQTRKTVEDLVKLADELTRSLARFKLATA
Ga0209160_12159381	3300026532	Soil	RASAEQVDGAEGVARAMQSIAQVAVHTEQAVLQTRKTVEDLVKLADELTRSLARFKLASA
Ga0209161_104579891	3300026548	Soil	SIAQVAVNTEQAVLQTRKTVEDLVKLADELTRSLARFKLATA
Ga0209818_11219172	3300027637	Agricultural Soil	VTQEQVRGADGVATAMRSIAQVAVHTEQAVLQTRRTVDDLVKVADELTRSLSRFKLATA
Ga0209799_10022615	3300027654	Tropical Forest Soil	AEVAVHTEQAVLQTRRTVDDLVKLADELTRSLSRFKLATN
Ga0209486_107995752	3300027886	Agricultural Soil	ATAMQSIAKVAVQTEQSVLQARKTVTDLVKLADELTSTLARFKLAAA
Ga0209382_116999181	3300027909	Populus Rhizosphere	SVAVRTEQAVLQTRKTVEDLVKLADELTRSLSRFKLAG
Ga0268265_106217652	3300028380	Switchgrass Rhizosphere	GVARAMGSIAQVAVNTEQAVLQTRKTVEDLVKLADELTRSLSRFKLAAA
Ga0247823_106373341	3300028590	Soil	DGVEGVARAMHSIAQVAVNTEQAVLQTRKTVEDLVKLADELTRSLSRFKLAA
Ga0247824_106581462	3300028809	Soil	VQTEQGVLQTRRTVDELVKLADTLQASLERFKLTA
Ga0247825_103557171	3300028812	Soil	SIATVAVQTEQGVLQTRRTVDELVKLADTLQASLERFKLTA
Ga0307312_109981202	3300028828	Soil	LQTEQGVLQTRKTVEDLVRLAQELTQTLSRFKLSA
Ga0307308_105318122	3300028884	Soil	LAQGISRTSAQQADGVEGVAKAMHSIAQVAVDTEQAVLQTRKTVEDLVKLADELTRSLSRFKLATA
Ga0247827_112934051	3300028889	Soil	ATAVQSIATVTVQTEQGVLQTRRTVDELVKLADTLQTSLERFKLTA
Ga0299907_100746852	3300030006	Soil	MRSIAQVAVDTEQAVLQTRRTVEDLVKLADDLTRSLSRFKLAAA
Ga0302046_115903061	3300030620	Soil	SIAEVAVETEQAVLQTRKTVEDLVKLADELTRSLSRFKLAAA
Ga0307498_103492641	3300031170	Soil	QVRGVEGVARAMGSIAQVAVNTEQAVLQTRKTVEDLVKLADELTRSLSRFKLAAA
Ga0310887_100103721	3300031547	Soil	AQADGVEGVARAMHSIAQVAVNTEQAVLQTRKTVEDLVKLADELTRSLSRFKLATA
Ga0307473_105775211	3300031820	Hardwood Forest Soil	AQVAVNTEQAVLQTRKTVEDLVKLADELSRSLSRFKLAAA
Ga0307473_115411871	3300031820	Hardwood Forest Soil	AEQVRGVEGVARAMGSIAQVAVNTEQAVLQTRKTVEDLVKLADELTRSLSRFKLAAA
Ga0307413_108392801	3300031824	Rhizosphere	VHTEQAVLQTRRTVDDLVKVADELARSLSRFKLATA
Ga0307406_106234671	3300031901	Rhizosphere	RAMQSIAQVAVNTEQAVLQTRKTVEDLVKLADELTRSLARFKLAAV
Ga0310884_108437092	3300031944	Soil	RAMSSIAQVAVNTEQAVLQTRKTVEDLVKLADELTRSLSRFKLAAA
Ga0310902_105678381	3300032012	Soil	ISRAGAEQVRGVEGVARAMGSIAQVAVNTEQAVLQTRKTVEDLVKLADELTRSLSRFKLAAA
Ga0307471_1010748201	3300032180	Hardwood Forest Soil	RGVEGVARAMNSIAQVAVNTEQAVLQTRKTVEDLVKLADELTRSLSRFKLASA
Ga0307472_1004570761	3300032205	Hardwood Forest Soil	DGVVRAMRSIAEVAVHTEQAVLQTRRTVDDLVKLADELTRSLSRFKLATN
Ga0307472_1005573381	3300032205	Hardwood Forest Soil	MSSIAQVAVNTEQAVLQTRKTVEDLVKLADELTRSLSRFKLAAA
Ga0373917_0064978_4_225	3300034692	Sediment Slurry	MSTSAAELAQGISRTSAQQADGVEGVARAMHAIAQVAVDTEQAVLQTRRTVEDLVKLADELTRSLSRFKLAAA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F104687

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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