Metagenome / Metatranscriptome Family F104862

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F104862
Family Type	Metagenome / Metatranscriptome
Number of Sequences	100
Average Sequence Length	46 residues
Representative Sequence	VSRSWVDAILAAGVVPASYVPEASVGRTDLEEFTGADPVEDPELR
Number of Associated Samples	84
Number of Associated Scaffolds	100

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	1.00 %
% of genes from short scaffolds (< 2000 bps)	2.00 %
Associated GOLD sequencing projects	73
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.27

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (98.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (29.000 % of family members)
Environment Ontology (ENVO)	Unclassified (64.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (69.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 31.51% β-sheet: 0.00% Coil/Unstructured: 68.49%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.27
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.27
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 100 Family Scaffolds
PF08241	Methyltransf_11	52.00
PF13489	Methyltransf_23	20.00
PF05635	23S_rRNA_IVP	13.00
PF01596	Methyltransf_3	6.00
PF01321	Creatinase_N	2.00
PF00155	Aminotran_1_2	2.00
PF12911	OppC_N	1.00
PF13649	Methyltransf_25	1.00

COG ID	Name	Functional Category	% Frequency in 100 Family Scaffolds
COG2518	Protein-L-isoaspartate O-methyltransferase	Posttranslational modification, protein turnover, chaperones [O]	6.00
COG4122	tRNA 5-hydroxyU34 O-methylase TrmR/YrrM	Translation, ribosomal structure and biogenesis [J]	6.00
COG4123	tRNA1(Val) A37 N6-methylase TrmN6	Translation, ribosomal structure and biogenesis [J]	6.00
COG0006	Xaa-Pro aminopeptidase	Amino acid transport and metabolism [E]	2.00

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.00 %
All Organisms	root	All Organisms	2.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.00 %
cellular organisms	root	All Organisms → cellular organisms	2.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.00 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	2.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.00 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	1.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.00 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.00 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	1.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.00 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300006049\|Ga0075417_10209738	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	924	Open in IMG/M
3300024330\|Ga0137417_1157687	All Organisms → cellular organisms → Bacteria	1366	Open in IMG/M

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.00%
Host-Associated	Host-Associated	3.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	97.00%
Plants	Host-Associated → Plants	3.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	97.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	93.00%
Loam	Environmental → Terrestrial → Soil → Loam	4.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.00%

Habitat	Taxonomy	Distribution
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	46.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	43.00%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.00%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.00%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.00%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	29.00%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	23.00%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	18.00%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	17.00%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.00%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.00%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.00%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.00%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.00%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.00%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm	Environmental	Open in IMG/M
3300002560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm	Environmental	Open in IMG/M
3300002561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG	Environmental	Open in IMG/M
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012395	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_8_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012399	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012404	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_8_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012410	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026277	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026295	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026296	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026298	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026306	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102 (SPAdes)	Environmental	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026313	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026316	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 (SPAdes)	Environmental	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)	Environmental	Open in IMG/M
3300026343	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)	Environmental	Open in IMG/M
3300026523	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 (SPAdes)	Environmental	Open in IMG/M
3300026524	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25385J37094_102104651	3300002558	Grasslands Soil	VAGSWVDAILAAGAVPASYVPDASAGRTDLEEFTGADLVED
JGI25383J37093_101584342	3300002560	Grasslands Soil	VSRSWVDAILAAGVVPASYVPEASVGRTDLEEFTGADPVEDPE
JGI25384J37096_100493041	3300002561	Grasslands Soil	VSRSWVEAILAAGVVPASYVPEASVGRTDLEEFTGADPVEDPELRVHSLAGARPL
JGI25382J43887_101068811	3300002908	Grasslands Soil	VSRSWVDAILAAGVVPASYVPEASVGRTDLEEFTGADPVEDPELRVHSLDGV
Ga0066674_101484791	3300005166	Soil	VSHSWVDAILAAGVVPASYVPEASVGRTDLEEFTGADPVEDPELRVHSL
Ga0066680_105286212	3300005174	Soil	VTRSWLDAIVAAGAVPASHVPEASVGRTDVAEFTGADPVEDDELRVHPLADARPLAP
Ga0066688_100569475	3300005178	Soil	VPRFWVDAILAAGAVPASYVPDASAGRTDLEEFTGADGVEDV
Ga0066685_110471292	3300005180	Soil	MTVSGSWVEAVVAAGAVPASHVPDASLGRSDVEEFTGADPVEAAELHTY
Ga0066678_102163471	3300005181	Soil	VSRSWVDAILAAGAVPASYVPDASVGRTDLEEFTGADPVEDPELRVH
Ga0070696_1001178034	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	VPRSWVDAILAAGVVPASYVPDASVGRTDLEEFTGAEPVEDPELRVHSLAGAQPLAP
Ga0066701_100805961	3300005552	Soil	VSRSWVDAILAAGVVPASYVPEASVGRTDLEEFTGADP
Ga0066661_100120815	3300005554	Soil	VSRSWVDAILAAGAVPASYVPDASVGRTDLEEFTGADPV
Ga0066698_102770751	3300005558	Soil	VSRSWVDAILAAGVVPASYVPEASVGRTDLEEFTGADAVEDPELRVHPLAGARALAPAA
Ga0066699_105762162	3300005561	Soil	VSRSWVDAILAAGAVPASYVPDASVGRTDLEEFTGADPVEDP
Ga0066703_101819053	3300005568	Soil	MTVSGSWVEAVVAAGAVPASHVPDASLGRSDVEEFT
Ga0066705_104633561	3300005569	Soil	VPDPRSWVDAILAAGAVPASAVPDASAGRSDLEEFTGADGVEDALLRTYSVA
Ga0066705_104984511	3300005569	Soil	VPRFWVDAILAAGAVPASYVPDASAGRTDLEEFTGADGVE
Ga0066702_104903322	3300005575	Soil	VSRSWVEAILAAGVVPASYVPEASVGRTDLEEFTGADPVE
Ga0066691_101014694	3300005586	Soil	VPRFWVDAILAAGAVPASYVPDASAGRTDLEEFTGADGV
Ga0066706_100134151	3300005598	Soil	VPGFWVDAILAAGAVPASYVPDASAGRTDLEEFTGADGVEDV
Ga0066656_105290321	3300006034	Soil	VSRSWVDAILAAGVVPASHVPEASVGRVDLEEFTGADPVEDPE
Ga0075417_102097382	3300006049	Populus Rhizosphere	VSRSWIEAILAAGVVPASYLPEASVGRTDLEEFTGADPVEDPQLRVHSLAGERPLAPARSA*
Ga0066665_100210631	3300006796	Soil	VSRSWVDAILAAGVVPASYVPDASIGRADLEEFTGAEPVEDEELRVHALAGVRRLAP
Ga0066659_102682681	3300006797	Soil	VPSVSPSPSWVDAVLEAGAVPASSVPDASLGRTDIEEFTGADAVEDRELQVHA
Ga0075433_100209276	3300006852	Populus Rhizosphere	VSRSWIEAILAAGVVPASYLPEASVGRTDLEEFTGADPVEDPQLRVHSLAGE
Ga0075426_102200223	3300006903	Populus Rhizosphere	VARSWVEAILAAGVVPASYLPEASVGRTDLEEFTGADPVEDP
Ga0066709_1006278411	3300009137	Grasslands Soil	VDAILAAGAVPASYVPDASAGRTDLEEFTGADGVEDVA
Ga0134082_101359972	3300010303	Grasslands Soil	VSRSWVDAILAAGVVPASSVPEASLGRTDVEEFTGADLVEDPELRIHPLV
Ga0134109_101833112	3300010320	Grasslands Soil	VSRSWVDAILAAGVVPASYVPEASVGRSDLEEFTGADPVE
Ga0134067_100027251	3300010321	Grasslands Soil	VDAILAAGAVPASAVPDASAGRSDLEEFTGADGVEDALVRTFSV
Ga0134067_100693881	3300010321	Grasslands Soil	MTVPGSWVEAVVAAGAVPASHIPEASLGRGDVDEFIGADP
Ga0134084_100269291	3300010322	Grasslands Soil	VSRSWVEAILAAGVVPASYVPEASVGRTDLEEFTG
Ga0134064_100333981	3300010325	Grasslands Soil	VDAILAAGAVPASAVPDASAGRSDLEEFTGADGVE
Ga0134064_100344553	3300010325	Grasslands Soil	VSRSWVDAILAAGVVPASSVPEASLGRTDVEEFTGAD
Ga0134065_100863761	3300010326	Grasslands Soil	VSRSWVDAILAAGVVPASSVPEASLGRTDVEEFTGADLVEDPELRIHPLVRVR
Ga0134080_101391121	3300010333	Grasslands Soil	VSRSWVDAILAAGVVPASHVPEASVGRVDLEEFTGADPVEDPELRV
Ga0134080_101483931	3300010333	Grasslands Soil	VDAILAAGAVPASYVPDASAGRTDVEEFTGADLVEDAELRTRSVADARP
Ga0134063_102194442	3300010335	Grasslands Soil	VSRSWVEAILAAGVVPASYVPEASVGRTDLEEFTGADPVEDPELRVHALAGARP
Ga0134125_125906741	3300010371	Terrestrial Soil	VTVSRSWVEAILAAGVVPASYLPEASVGRADLEEFTGADPVEDPELRVHSLAGERPL
Ga0134128_104578604	3300010373	Terrestrial Soil	VARLAWLDAALAAGAVPASYVPDASGGRSEAEELTGA
Ga0137365_105988032	3300012201	Vadose Zone Soil	MTGSGSWVEAVVAAGAVPASHVPEASLGRGDVEEFTGAD
Ga0137363_105555902	3300012202	Vadose Zone Soil	VPRSWVDAILVAGVVPASYVPDASVGRTDLEEFTGAEPVEDPELRVHSLAGAQPLAPAAV
Ga0137362_106625522	3300012205	Vadose Zone Soil	VSRSWVDAILAAGVVPASYVPDASIGRTDLEEFTGAEPVED
Ga0137370_103934191	3300012285	Vadose Zone Soil	VSRSWVEAILAAGVVPASYVPEAGVGRTDLEEFTGAEAVEDPELRVHSLAGAR
Ga0137387_1000047818	3300012349	Vadose Zone Soil	VTRSWLDAIVAAGAVPASHVPEASVGRSDVAEFTGADPVEDDELRVHP
Ga0137372_101118535	3300012350	Vadose Zone Soil	MTGSGSWVEAVVAAGAVPASHVPEASLGRGDVEEFT
Ga0134044_11684151	3300012395	Grasslands Soil	VSRSWVEAILAAGVVPASYVPEASVGRTDLEEFTGADP
Ga0134061_13908701	3300012399	Grasslands Soil	VSRSWVEAILAAGVVPASYVPEASVGRTDLEEFTGADPVEDP
Ga0134024_13482642	3300012404	Grasslands Soil	VSHSWVDAILAAGVVPASYVPEASVGRTDLEEFTGADPVRTRSSGC
Ga0134060_13657832	3300012410	Grasslands Soil	VSRSWVEAILAAGVVPASYVPEASVGRTDLEEFTGADPVEDPELRVHALA
Ga0137395_102595664	3300012917	Vadose Zone Soil	LTVPRSWVDAILAAGVVPASYLPDASVGRTDLAEFTGAEPVEDPEL
Ga0137359_104473102	3300012923	Vadose Zone Soil	VSRSWVDAILAAGVVPASYVPDASLGRSDLEEFTGADPVED
Ga0137419_100490844	3300012925	Vadose Zone Soil	VSRSWVDAILAAGVVPASYVPEASVGRTDLEEFTGADPVEDP
Ga0137416_105038241	3300012927	Vadose Zone Soil	VSRSWVDAILAAGVVPASYVPEASVGRTDLEEFTGADPVEDPELR
Ga0137416_107857532	3300012927	Vadose Zone Soil	VSRSWVDAILAAGVVPASYVPDASVGRTDLEEFTGADPVEDAELRVHALAEARPLA
Ga0137404_107523981	3300012929	Vadose Zone Soil	VARSWVEAILAAGVVPASYVPEASVGRTDLEEFTGAEPVEDPE
Ga0137407_106283983	3300012930	Vadose Zone Soil	VSRSWVDAILAAGAVPASYVPEASVGRTDLEEFTGA
Ga0137407_114232791	3300012930	Vadose Zone Soil	LTVPRSWVDAILAAGVVPASYVPDASVGRTDLEEFTGAE
Ga0134076_105862042	3300012976	Grasslands Soil	VSRSWVDAIVAAGVVPASSVPEASLGRTDLEEFTGADPVE
Ga0137418_100215537	3300015241	Vadose Zone Soil	LTVPRSWVDAILAAGVVPASYVPDASVGRTDLEEFTGAEPVEDPELRVHSLAGAQPLA
Ga0137403_102027181	3300015264	Vadose Zone Soil	VARSWVEAILAAGVVPASYVPEASVGRTDLEEFTGADPVEDPELQVHSLAGAH
Ga0137403_105775971	3300015264	Vadose Zone Soil	VSRSWVDAILAAGAVPASYVPDASVGRADLEEFTGADPVEDP
Ga0134073_100104081	3300015356	Grasslands Soil	MTVPGSWVEAVVAAGAVPASHIPEASLGRGDVDEFIGADPVEGGELRV
Ga0134073_102722762	3300015356	Grasslands Soil	MTVSGSWVEAVVAAGAVPASHVPDASLGRGDLEEFTGADPIE
Ga0066655_109739522	3300018431	Grasslands Soil	MTVPGSWVEAVVAAGAVPASHIPEASLGRGDVDEFIGADPVEGGELRVEP
Ga0066667_101451251	3300018433	Grasslands Soil	VSRSWVDAILAAGVVPASSVPEASLGRTDVEGVTGADL
Ga0066667_105228911	3300018433	Grasslands Soil	VPRFWVDAILAAGAVPAYYVLDASAGRSDYVEFTGADGVEFVAL
Ga0066667_112574062	3300018433	Grasslands Soil	VSRSWVDAILAAGVVPASYVPEASVGRSDLEEFTGADPVENP
Ga0066669_107031552	3300018482	Grasslands Soil	VSRSWVDAILAAGVVPASYVPDASIGRADLEEFTGAEPVEDQELRVHALA
Ga0137408_14851621	3300019789	Vadose Zone Soil	VSRSWVDAILAAGVVPASYVPEASVGRTDLEEFTGADAVEDPELRVHP
Ga0137417_10953111	3300024330	Vadose Zone Soil	VSRSWVDAILAAGVVPASYVPDASLGRTDLEEFTGADPVEDPELRRWRTRSSEFTR
Ga0137417_11576873	3300024330	Vadose Zone Soil	VSRSWVDAILAAGVVPASYVPDASLGRTDLEEFTGADPVEDPELRVHPLTGARALAPGA
Ga0137417_13590512	3300024330	Vadose Zone Soil	VPRSWVDAILAAGVVPASYVPDASVGRTDLEEFTGAEPVEDPELRVYSLAGAQPLAPA
Ga0207646_105824222	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	LIVARSWVEAVLAAGAVPASAVPEASLGRTDIETFTG
Ga0209350_10806862	3300026277	Grasslands Soil	VSRSWVDAILAAGVVPASYVPEASVGRTDLEEFTGADPVEDPELRVHSL
Ga0209234_11384362	3300026295	Grasslands Soil	MTVSGSWVEAVVAAGAVPASHVPDASLGRGDLEEFTGADPIEDPELRVHALED
Ga0209234_12800842	3300026295	Grasslands Soil	MTVSGSWVEAVVAAGAVPASHVPDASLGRGDLEEFTGADPIEDPELRVHL
Ga0209235_11168171	3300026296	Grasslands Soil	VSRSWVDAILAAGVVPASYVPDASIGRTDLEEFTGAEPVEDQELRVHALAGVRR
Ga0209236_11901952	3300026298	Grasslands Soil	VSRSWVDAILAAGAVPASYVPDASVGRTDLEEFTGADPVEDPELRVHARGGA
Ga0209468_10574313	3300026306	Soil	VSRSWVDAILAAGVVPASHVPEASVGRVDLEEFTGADPVEDPELRVRSLVGAPAL
Ga0209239_10241465	3300026310	Grasslands Soil	MTLRGSWVEAVVAAGAVPASHVPDASLGRGDVEEFTGADPVEAGE
Ga0209761_11929831	3300026313	Grasslands Soil	VACSWVEAILAAGVVPASYVPEASVGRTDLEEFTGADPVE
Ga0209155_10015491	3300026316	Soil	VPPPRSWVDAILAAGAVPASAVPDASAGRSDLEEFTG
Ga0209155_11886452	3300026316	Soil	VPPLPSWVDAILAAGAVPASAVPDASAGRSDLEEFTG
Ga0209470_10147461	3300026324	Soil	VSRSWVEAILAAGVVPASYVPEASVGRTDLEEFTGADPVEDPELRVHSL
Ga0209158_11865261	3300026333	Soil	VSRSWVDAILAAGVVPASSVPEASLGRTDVEEFTGA
Ga0209159_12060341	3300026343	Soil	VPGFWVDAILAAGAVPASYVPDASAGRTDLEEFTGADGVEDVALR
Ga0209808_10172741	3300026523	Soil	VAGSWVDAILAAGAVPASYVPDASAGRTDLDEFMGADLVEDAELRTRSVADAR
Ga0209808_11373403	3300026523	Soil	MTVPGSWVEAVVAAGAVPASHIPEASLGRGDVEEFIGADPVEGGELRVEP
Ga0209690_10762991	3300026524	Soil	VSHSWVDAILAAGVVPASYVPEASVGRTDLEAFTGADPVEDPELR
Ga0209056_100446411	3300026538	Soil	VSRSWVDAILAAGVVPASYVPDASIGRADLEEFTGAEPVEDEELRVHAL
Ga0209056_101711233	3300026538	Soil	VSRSWVDAILAAGVVPASSVPEASLGRTDVEEFTGADLVEDPELRIHPLVG
Ga0209376_12430022	3300026540	Soil	VSRSWVDAILAAGVVPASSVPEASLGRTDVEEFTGADLVEDPEL
Ga0209577_102335841	3300026552	Soil	VPPPRSWVDAILAAGAVPASAVPDASAGRSDLEEFTGADGVEDALLRTYS
Ga0209588_12558852	3300027671	Vadose Zone Soil	VSRSWVDAILAAGVVPASYVPEASLGRTDLEEFTGADPVEDPELR
Ga0209178_11265062	3300027725	Agricultural Soil	MTGRPTSRSWVEAIVAAGAVPASHVPEASVGRSDTEAFAGADPVEDS
Ga0209283_103426662	3300027875	Vadose Zone Soil	VSRSWVDAILAAGVVPASHVPDASLGRTDLEEFTGAEPV
Ga0307479_105533733	3300031962	Hardwood Forest Soil	MTRPRSWVEAILAAGAVPASHLPEASLGRTDLEEFTGADPV
Ga0307470_115095501	3300032174	Hardwood Forest Soil	MAGRLAWLDALLAAGAVPASFVPDASGGRSDAAEVTGAD
Ga0307471_1022302002	3300032180	Hardwood Forest Soil	MTVSGSWVEAVVAAGAVPASHVPDASLGRDDLDEFTGADPIE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F104862

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences