Metagenome Family F104897

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F104897
Family Type	Metagenome
Number of Sequences	100
Average Sequence Length	61 residues
Representative Sequence	PIRMGKTEIGTMFLLSMVFLAAVLAVLGVVYSDNWAKGGVGVAVIIAILLYWSITKEGKSLTP
Number of Associated Samples	67
Number of Associated Scaffolds	100

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	1.00 %
Associated GOLD sequencing projects	55
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (94.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (39.000 % of family members)
Environment Ontology (ENVO)	Unclassified (79.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (80.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 57.14% β-sheet: 0.00% Coil/Unstructured: 42.86%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 100 Family Scaffolds
PF12697	Abhydrolase_6	18.00
PF00561	Abhydrolase_1	9.00
PF16653	Sacchrp_dh_C	5.00
PF00339	Arrestin_N	3.00
PF13602	ADH_zinc_N_2	2.00
PF03435	Sacchrp_dh_NADP	2.00
PF05915	TMEM_230_134	2.00
PF00736	EF1_GNE	1.00
PF00583	Acetyltransf_1	1.00
PF13248	zf-ribbon_3	1.00
PF04820	Trp_halogenase	1.00
PF01243	Putative_PNPOx	1.00
PF14470	bPH_3	1.00
PF01850	PIN	1.00
PF04909	Amidohydro_2	1.00
PF01022	HTH_5	1.00
PF02629	CoA_binding	1.00
PF13240	zinc_ribbon_2	1.00
PF01370	Epimerase	1.00

COG ID	Name	Functional Category	% Frequency in 100 Family Scaffolds
COG2092	Translation elongation factor EF-1beta	Translation, ribosomal structure and biogenesis [J]	1.00

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.00 %
All Organisms	root	All Organisms	6.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.00 %
cellular organisms	root	All Organisms → cellular organisms	6.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.00 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	5.00 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.00 %
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	2.00 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.00 %
Candidatus Bathyarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota	1.00 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.00 %
unclassified Candidatus Bathyarchaeota	no rank	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota	1.00 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.00 %
Candidatus Bathyarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1.00 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005167\|Ga0066672_10009044	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	4683	Open in IMG/M
3300005186\|Ga0066676_10162677	All Organisms → cellular organisms → Bacteria	1411	Open in IMG/M
3300009012\|Ga0066710_100065789	All Organisms → cellular organisms → Archaea	4614	Open in IMG/M
3300026317\|Ga0209154_1001762	All Organisms → cellular organisms → Archaea	12479	Open in IMG/M
3300026328\|Ga0209802_1000030	All Organisms → cellular organisms → Archaea	85683	Open in IMG/M
3300026536\|Ga0209058_1063917	All Organisms → cellular organisms → Archaea → TACK group	2011	Open in IMG/M

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	99.00%
Loam	Environmental → Terrestrial → Soil → Loam	1.00%

Habitat	Taxonomy	Distribution
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	69.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.00%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.00%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	39.00%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	30.00%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	19.00%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	10.00%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.00%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.00%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm	Environmental	Open in IMG/M
3300002560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm	Environmental	Open in IMG/M
3300002561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm	Environmental	Open in IMG/M
3300002562	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300026295	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026296	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026297	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026298	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026317	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)	Environmental	Open in IMG/M
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental	Open in IMG/M
3300026329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)	Environmental	Open in IMG/M
3300026342	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)	Environmental	Open in IMG/M
3300026524	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)	Environmental	Open in IMG/M
3300026528	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)	Environmental	Open in IMG/M
3300026530	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)	Environmental	Open in IMG/M
3300026536	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)	Environmental	Open in IMG/M
3300026537	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25385J37094_100081395	3300002558	Grasslands Soil	MFLLAMVFLAAVLAVLGVVFQDNWAKGGVGAAVIIAILLYWSITKEKKSLTP*
JGI25385J37094_100615822	3300002558	Grasslands Soil	MSVPIRLGKTEIGTMFLLSLVFLAAVLAVLGVIFQDNWAKGGVGAAIIIAILLYWNITKERKTLTP*
JGI25383J37093_101543841	3300002560	Grasslands Soil	MGKAEIGTMFLLSMVFLAAILAILGVVYSDNWAKGGVGAAIIIAILLYWNITKERKSLTP
JGI25384J37096_100343161	3300002561	Grasslands Soil	MFLLSMVFLAAILAILGVVYSDNWAKGGVGVAVIIAILLYWNITKERKSLTP*
JGI25382J37095_100035196	3300002562	Grasslands Soil	MFLLAMVFLAAVLAVLGVVFQDNWAKGGVGAAVIIAILLYWNITKEKKSLTP*
JGI25382J37095_100233564	3300002562	Grasslands Soil	MSIPIRMGRTEIGTIYLLGMVFLAAVLAILGVVYNDAWAKGGVVAAVGISILLYWSITREKKSLTP*
JGI25382J43887_100071635	3300002908	Grasslands Soil	MGRTEIGTIYLLGMVFLAAVLAILGVVYNDAWAKGGVVAAVGISILLYWSITREKKSLTP
JGI25382J43887_100410181	3300002908	Grasslands Soil	SLPMRLGKTEIGTMFLLAMVFLAAVLAVLGVVFQDNWAKGGVGAAVIIAILLYWNITKEKKSLTP*
JGI25382J43887_100753533	3300002908	Grasslands Soil	MSIPIRMGRTEIGTIYLLAIVFLAAVLAILGVVYNDGWAKGGVAAAVIISILLYWSITKEKKSLTP*
JGI25382J43887_103134871	3300002908	Grasslands Soil	MFLLAMVFLAAVLAVLGVVFQDNWAKGGVGAAVIIAILLYW
Ga0066672_100090445	3300005167	Soil	MFLLSLVFLAAVLAVLGVIFQDNWAKGGVGAAIIIAILLYWSITKEKKSLTP*
Ga0066672_103701802	3300005167	Soil	MSLPIRMGRTEIGTIYLLAIVFLAAVLAILGVVYNDGWAKGGVAAAVIISILLYWSITKEKKSLTP*
Ga0066672_109816011	3300005167	Soil	VSSPVRLGRTEVGTIFLVSLVFLAAVLAVLGVVFQDNWAKGGVGAAVIIAILLYW
Ga0066683_105153492	3300005172	Soil	MSVPIRLGKTEIGTMFLLSLVFLAAVLAVLGVIFQDNWAKGGVGAAIIIAILLYWNITKEKKSLTP
Ga0066680_100215064	3300005174	Soil	MSIPIRMGRTEIGTIYLLAMVFLAAVLAILGVVYNDAWAKGGVVAAVGISILLYWSITKEKKSLTP*
Ga0066680_105847651	3300005174	Soil	MSVPIRLGKTEIGTMFLLSLVFLAAVLAVLGVIFQDNWAKGGVGAAIIIAILLYW
Ga0066673_100029597	3300005175	Soil	MSVPIRMGKTEIGTMFLLSMVFLAAVLAVLGVVYSDNWAKGGVGVAVIIAILLYWSITKEGKSLTP*
Ga0066685_102477882	3300005180	Soil	VSIPIRLGKTEIGTMFLLSLVFLAAVLAVLGVIFQDNWAKGGVGAAIIIAILLYWNITKERKSLTP*
Ga0066685_102663232	3300005180	Soil	MSNPRIKQRRQNMSVPIRMGKAEIGTMFLLSMVFLAAILAILGVVYSDNWAKGGVGVAVIIAILLYWNITKERKSLTP*
Ga0066685_103295022	3300005180	Soil	MFLLSLVFLAAVLAVLGVIFQDNWAKGGVGAAIIIAILLYWNITKEKKSLTP*
Ga0066685_107751632	3300005180	Soil	MSVPIRMGKTEIGTMFLLSMVFLAAVLAILGVVYSDNWAKGGVGVAVIIAILLYWSITKEGKSLTP*
Ga0066676_101626773	3300005186	Soil	MSVPIRMGKTEIGTMFLLSMVFLAAVLAVLGVVYSDNWAKGGVGVVVIIAILLYWSITKEGKSLTS*
Ga0066675_110658711	3300005187	Soil	MGKAEIGTMFLLSMVFLAAILAILGVVYSDNWAKGGVGVAVIIAILLYWNITKERKSL
Ga0066686_106849341	3300005446	Soil	MFLLSLVFLAAVLAVLGVIFQDNWAKGGVGAAIIIAILLYWNITKERKSLTP*
Ga0066689_104904322	3300005447	Soil	MSVPVRMGKAEIGTMFLLSMVFLAAILAILGVVYSDNWAKGGVGVAVIIAILLYWNITKERKSLTP*
Ga0066689_106693822	3300005447	Soil	MSVPIRLGKTEIGTMFLLSLVFLAAVLAVLGVIFQDNWAKGGVGAAIIIAILLYWNITKE
Ga0066701_100007671	3300005552	Soil	SLPMRLGKTEIGTMFLLAMVFLAAVLAVLGVVFQDNWAKGGVGAAVIIAILLYWSITKEKKSLTP*
Ga0066701_100609152	3300005552	Soil	MSVPIRMGKTEIGTMFLLSMVFLAAVLAILGVVYSDNWAKGGVGVAVIIAILLYWNITKEGKSLTP*
Ga0066701_104266412	3300005552	Soil	MSVPIRLGKTEIGTMFLLSLVFLAAVLAVLGVIFQDNWAKGGVGAAIIIAILLYWNITKEKKSLTP*
Ga0066707_108160691	3300005556	Soil	VSIPIRLGKTEIGTMFLLSLVFLAAVLAVLGVIFQDNWAKGGVGAAIIIAILLYWNITKERKTLTP*
Ga0066698_100424524	3300005558	Soil	MSVPIRMGKTEIGTMFLLSMVFLAAVLAVLGVVYSDNWAKGGVGVVVIIAILLYWSITKEGKSLTP*
Ga0066694_101398132	3300005574	Soil	MGKTEIGTMFLLSMVFLAAVLAVLGVVYSDNWAKGGVGVAVIIAILLYWSITKEGKSLTP
Ga0066691_100496094	3300005586	Soil	LSLPMRLGKTEIGTMFLLAMVFLAAVLAVLGVVFQDNWAKGGVGAAVIIAILLYWSITKEKKSLTP*
Ga0066656_102143692	3300006034	Soil	MSVPIRMGKAEIGTMFLLSMVFLAAILAILGVVYSDNWAKGGVGVAVIIAILLYWNITKERKSLTP*
Ga0066656_106358661	3300006034	Soil	MSVPIRLGKTEIGTMFLLSLVFLAAVLAVLGVIFQDNWAKGGVGAAIIIAILLYWNITKERKSL
Ga0066653_101675571	3300006791	Soil	MSVPIRLGKTEIGTMFLLSLVFLAAVLAVLGVIFQDNWAKGGVGATIIIAILLYWNITKEKKSLTP*
Ga0066660_102391261	3300006800	Soil	MSVPIRLGKTEIGTMFLLSLVFLAAVLAVLGVIFQDNWAKGGVGAAIIIAILLYWNMTKEKKSLTP*
Ga0099793_106013272	3300007258	Vadose Zone Soil	VIGTIFLVALIFLASVLAVLGVVYNDGWAKGGVGGAVIIAILLYWSITKERK
Ga0066710_1000657892	3300009012	Grasslands Soil	MFLLAMVFLAAVLAVLGVVFQDNWAKGGVGAAVVISILLYWSITKEKKSLTP
Ga0066710_1025380552	3300009012	Grasslands Soil	MSVPVRMGKAEIGTMFLLSMVFLAAILAILGVVYSDNWAKGGVGGAVIIAILLYWNITKERKSLTP
Ga0066710_1035638392	3300009012	Grasslands Soil	QNMSVPIRMGKAEIGTMFLLSMVFLAAILAILGVVYSDNWAKGGVGAAIIIAILLYWNITKERKSLTP
Ga0066710_1035638402	3300009012	Grasslands Soil	QNMSVPIRMGKAEIGTMFLLSMVFLAAILAILGVVYSDNWAKGGVGVAVIIAILLYWNITKERKSLTP
Ga0099830_102093293	3300009088	Vadose Zone Soil	MGRTEIGTIYLLAMVFLAAVLAILGVVYNDAWAKGGVVAAVGISILLYWSITKEKKSLAP
Ga0099828_101676182	3300009089	Vadose Zone Soil	MGRTEIGTIYLLAMVFLAAVLAILGIVYNDAWAKGGVVAAVGISILLYWSITKEKKSLAP
Ga0066709_1034197951	3300009137	Grasslands Soil	MSVPIRLGKTEIGTMFLLSMVFLAAVLAVLGVVFSDNWAKGGVGVAVIIAILLYWNITKEKKILTP*
Ga0134070_103300821	3300010301	Grasslands Soil	MGKTEIGTMFLLSMVFLSAVLAVLGVVYSDNWAKGGVGVAVIIAILLYWSITKEGKSLTP
Ga0134082_103863021	3300010303	Grasslands Soil	PIRMGKTEIGTMFLLSMVFLAAVLAVLGVVYSDNWAKGGVGVAVIIAILLYWSITKEGKSLTP*
Ga0134082_105297792	3300010303	Grasslands Soil	SLVFLAAVLAVLGVIFQDNWAKGGVGAAIIIAILLYWNITKERKSLTP*
Ga0134111_100876391	3300010329	Grasslands Soil	MGKAEIGTMFLLSMVFLAAILAILGVVYSDNWAKGGIGVAVIIAILLYWNITKERKSLTP
Ga0134063_106291522	3300010335	Grasslands Soil	MGKTEIGTMFLLSMVFLAAVLAVLGVVYSDNCAKGGVGVVVIIAILLYWSITKGGKSLTP
Ga0137393_111098012	3300011271	Vadose Zone Soil	MGRTEIGTIYLLAMVFLAAVLAILGVVYNDAWAKGGVVAAVGISILLYWSITKEKK
Ga0137364_110761821	3300012198	Vadose Zone Soil	LGKTEVGTIFLVSLVFLAAVLAVLGVVYNDGWAKGGVAGAVILAILLYWSITKEKKSLTP
Ga0137383_100702372	3300012199	Vadose Zone Soil	MGRTEIGTIYLLAIVFLAAVLAILGVVYNDGWAKGGVAAAVIISILLYWSITKEKKSLTP
Ga0137365_100471821	3300012201	Vadose Zone Soil	RLGKTEIGTMFLLSLVFLAAVLAVLGVIFQDNWAKGGVGAALIIAILLYWNITKEKKSLTP*
Ga0137365_105778351	3300012201	Vadose Zone Soil	MGKTEIGTMFLLSMVFLAAVLAILGVVYSDNWAKGGVGVAVIIAILLYWSITKEKKSLTP
Ga0137380_100761402	3300012206	Vadose Zone Soil	MTMSVPTHLERSVIGTIFLVAWIFLASVLAVLGVVYNDGWAKGGVGGAVIIAILLYWSITKERKTLPA*
Ga0137380_104176871	3300012206	Vadose Zone Soil	SMSVPIRLGKTEIGTMFLLSLVFLAAVLAVLGVIFQDNWAKGGVGAAIIIAILLYWNITKEKKSLTP*
Ga0137379_1000129911	3300012209	Vadose Zone Soil	MTMSVPTHLERSVIGTIFLVALIFLASVLAVLGVVYNDGWAKGGVGGAVIIAILLYWSITKERKTLPA*
Ga0137379_105232762	3300012209	Vadose Zone Soil	MFLLSLVFLAAVLAVLGVIFQDNWAKGGVGAVIIIAILLYWNITKEKKSLTP*
Ga0137367_110055401	3300012353	Vadose Zone Soil	MFLLSLVFLAAVLAILGVVYSDNWAKGGVGVAVIIAILLYWSITKEGKSLTP*
Ga0137371_103155361	3300012356	Vadose Zone Soil	LGKTEIGTMFLLSMVFLAAVLAVLGVVFSDNWAKGGAGVAVIIAILLYWNITKEKKSLTP
Ga0137371_109785092	3300012356	Vadose Zone Soil	GKTEIGTMFLLSLVFLAAVLAVLGVIFQDNWAKGGVGAAIIIAILLYWNITKEKKSLTP*
Ga0137361_100452197	3300012362	Vadose Zone Soil	AAVLAVLGVIFQDNWAKGGVGAVIIIAILLYWNITKEKKSLTP*
Ga0137361_102178511	3300012362	Vadose Zone Soil	MFLLSLVFLAAVLAVLGVIFQDNWAKGGVGAVIIIAILLYWNITKEKKS
Ga0134076_104026591	3300012976	Grasslands Soil	LGKTEIGTMFLLSLVFLAAVLAVLGVIFQDNWAKGGVGAAIIIAILLYWNITKEKKSLTP
Ga0134073_102688461	3300015356	Grasslands Soil	GTMFLLSMVFLAAVLAVLGVVYSDNWAKGGVGVAVIIAILLYWSITKEGKSLTP*
Ga0134089_103330122	3300015358	Grasslands Soil	LGKTEIGTMFLLSLVFLAAVLAVLGVIFQDNWAKGGVGAAIIIAILLYWNITKEKKSL
Ga0134112_101343892	3300017656	Grasslands Soil	IEQRRRSVSIPIRLGKTEIGTMFLLSLVFLAAVLAVLGVIFQDNWAKGGVGAAIIIAILLYWNITKEKKSLTP
Ga0134083_105105211	3300017659	Grasslands Soil	VSIPIRLGKTEIGTMFLLSLVFLAAVLAVLGVIFQDNWAKGGVGAAIIIAILLYWNITKEKKSLTP
Ga0066655_100048812	3300018431	Grasslands Soil	MGKAEIGTMFLLSMVFLAAILAILGVVYSDNWAKGGVGVAVIIAILLYWNITKERKSLTP
Ga0066655_101355852	3300018431	Grasslands Soil	MGKTEIGTMFLLSMVFLAAVLAVLGVVYSDNWAKGGVGVVVIIAILLYWSITKEGKSLTP
Ga0066655_113327751	3300018431	Grasslands Soil	MGKTEIGTMFLLSMVFLAAVLAILGVVYSDNWAKGGVGVAVIIAILLYWSITKEGKSLTP
Ga0066667_100404625	3300018433	Grasslands Soil	FLLSMVFLAAVLAVLGVVYSDNWAKGGVGVAVIIAILLYWSITKEGKSLTP
Ga0066667_101091932	3300018433	Grasslands Soil	MSNPRIKQRRQNMSVPIRMGKAEIGTMFLLSMVFLAAILAILGVVYSDNWAKGGVGVAVIIAILLYWNITKERKSLTP
Ga0066667_104714542	3300018433	Grasslands Soil	MFLLSLVFLAAVLAVLGVIFQDNWAKGGVGAAIIIAILLYWNITKEKKSLTP
Ga0066662_100119705	3300018468	Grasslands Soil	MFLLAMVFLAAVLAVLGVVFQDNWAKGGVGAAVIIAILLYWSITKEKKSLTP
Ga0066662_104223592	3300018468	Grasslands Soil	MFLLSLVILAAVLAVLGVIFQDNWAKGGVGAAIIIAILLYWNITKEKKSLTP
Ga0209234_10482163	3300026295	Grasslands Soil	MSVPIRLGKTEIGTMFLLSLVFLAAVLAVLGVIFQDNWAKGGVGAAIIIAILLYWNITKERKTLTP
Ga0209235_10490611	3300026296	Grasslands Soil	MFLLSMVFLAAILAILGVVYSDNWAKGGVGAAIIIAILLYWNITKERKSLTP
Ga0209235_12861072	3300026296	Grasslands Soil	MSVPIRLGKTEIGTMFLLSMVFLAAVLAVLGVVFSDNWAKGGVGVAVIIAILLYWNITKEKKILTP
Ga0209237_11646212	3300026297	Grasslands Soil	MFLLAMVFLAAVLAVLGVVFQDNWAKGGVGAAVIIAILLYWNIT
Ga0209236_10198111	3300026298	Grasslands Soil	LGKTEIGTMFLLSMVFLAAVLAVLGVVFSDNWAKGGVGVAVIIAILLYWNITKEKKILTP
Ga0209236_10512442	3300026298	Grasslands Soil	MSVPIRMGKAEIGTMFLLSMVFLAAILAILGVVYSDNWAKGGVGAAIIIAILLYWNITKERKSLTP
Ga0209154_10017628	3300026317	Soil	MFLLSLVFLAAVLAVLGVIFQDNWAKGGVGAAIIIAILLYWSITKEKKSLTP
Ga0209802_100003045	3300026328	Soil	MSIPIRMGRTEIGTIYLLAMVFLAAVLAILGVVYNDAWAKGGVVAAVGISILLYWSITKEKKSLTP
Ga0209375_10312084	3300026329	Soil	MFLLSMVFLAAVLAVLGVVYSDNWAKGGVGVAVIIAILLYWSITKEGKSLTP
Ga0209057_100110321	3300026342	Soil	MSVPIRMGKAEIGTMFLLSMVFLAAILAILGVVYSDNWAKGGVGVAVIIAILLYWNITKERKSLTP
Ga0209057_10849422	3300026342	Soil	MSVPIRMGKTEIGTMFLLSMVFLAAVLAVLGVVYSDNWAKGGVGVAVIIAILLYWSITKEGKSLTP
Ga0209690_10629432	3300026524	Soil	KQRRRNMSVPIRMGKTEIGTMFLLSMVFLAAVLAILGVVYSDNWAKGGVGVAVIIAILLYWNITKEGKSLTP
Ga0209378_12659991	3300026528	Soil	LPMRLGKTEIGTMFLLAMVFLAAVLAVLGVVFQDNWAKGGVGAAVIIAILLYWSITKEKKSLTP
Ga0209807_100029418	3300026530	Soil	MSVPIHMGKTEIGTMFLLSMVFLAAVLAVLGVVYSDNWAKGGVGVAVIIAILLYWSITKEGKSLTP
Ga0209058_10639172	3300026536	Soil	MSVPIRMGKTEIGTMFLLSMVFLAAVLAVLGVVYSDNWAKGGVGVVVIIAILLYWSITKEGKSLTP
Ga0209157_13300191	3300026537	Soil	VSIPIRLGKTEIGTMFLLSLVFLAAVLAVLGVIFQDNWAKGGVGAAIIIAILLYWNITKERKSLTP
Ga0209056_102314683	3300026538	Soil	MSVPVRMGKAEIGTMFLLSMVFLAAILAILGVVYSDNWAKGGVGVAVIIAILLYWNITKERKSLTP
Ga0209376_10502812	3300026540	Soil	MFLLSLVFLAAVLAVLGVIFQDNWAKGGVGAAIIIAILLYWNITKERKSLTP
Ga0209376_11464932	3300026540	Soil	MSVPIRLGKTEIGTMFLLSLVFLAAVLAVLGVIFQDNWAKGGVGAAIIIAILLYWNITKEKK
Ga0209648_106948562	3300026551	Grasslands Soil	VSGPVRLGKTEVGTIFLVSLVFLAAVLAVLGVVYNDGWAKGGVVGAVIIAILLYWSITSERKSLIP
Ga0209701_104288501	3300027862	Vadose Zone Soil	MIKKRRRYVSIPIRMGRTEIGTIYLLAMVFLAAVLAILGVVYNDAWAKGGVVAAVGISILLYWSITKEKKSLAP
Ga0209283_102256582	3300027875	Vadose Zone Soil	VSIPIRMGRTEIGTIYLLAMVFLAAVLAILGIVYNDAWAKGGVVAAVGISILLYWSITKEKKSLAP
Ga0307471_1031761773	3300032180	Hardwood Forest Soil	MTMSVPTHLERSVIGTIFLVALIFLASVLAVLGVVYNDGWAKGGVGGAVIIAILLYWSITKERKTLTA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F104897

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences