NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F104982

Metagenome Family F104982

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F104982
Family Type Metagenome
Number of Sequences 100
Average Sequence Length 44 residues
Representative Sequence MALVNQVQKRVKMPKWDVVKFQILVHCYINRITMSDSDLNCLT
Number of Associated Samples 84
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 46.46 %
% of genes near scaffold ends (potentially truncated) 96.00 %
% of genes from short scaffolds (< 2000 bps) 91.00 %
Associated GOLD sequencing projects 82
AlphaFold2 3D model prediction Yes
3D model pTM-score0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (68.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake
(26.000 % of family members)
Environment Ontology (ENVO) Unclassified
(49.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(55.000 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 29.58%    β-sheet: 0.00%    Coil/Unstructured: 70.42%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.50
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF01510Amidase_2 7.00
PF13539Peptidase_M15_4 3.00
PF08291Peptidase_M15_3 1.00
PF07992Pyr_redox_2 1.00
PF00959Phage_lysozyme 1.00
PF01391Collagen 1.00
PF09374PG_binding_3 1.00
PF01471PG_binding_1 1.00
PF05105Phage_holin_4_1 1.00
PF12705PDDEXK_1 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG4824Phage-related holin (Lysis protein)Mobilome: prophages, transposons [X] 1.00

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A68.00 %
All OrganismsrootAll Organisms32.00 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000792|BS_KBA_SWE02_21mDRAFT_10178571All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium518Open in IMG/M
3300002360|B570J29630_1010004Not Available627Open in IMG/M
3300002408|B570J29032_109804370All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales1393Open in IMG/M
3300002835|B570J40625_100550102Not Available1070Open in IMG/M
3300002835|B570J40625_101348549All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium590Open in IMG/M
3300002835|B570J40625_101777171All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium500Open in IMG/M
3300003277|JGI25908J49247_10006223Not Available3807Open in IMG/M
3300003860|Ga0031658_1066566Not Available632Open in IMG/M
3300004481|Ga0069718_16165672Not Available1135Open in IMG/M
3300005581|Ga0049081_10023884All Organisms → Viruses → Predicted Viral2321Open in IMG/M
3300005584|Ga0049082_10330571Not Available505Open in IMG/M
3300006735|Ga0098038_1225530Not Available599Open in IMG/M
3300007171|Ga0102977_1029965All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage8540Open in IMG/M
3300007560|Ga0102913_1268126Not Available545Open in IMG/M
3300007974|Ga0105747_1099195All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium908Open in IMG/M
3300008261|Ga0114336_1011733Not Available18047Open in IMG/M
3300008263|Ga0114349_1217231Not Available668Open in IMG/M
3300009068|Ga0114973_10690598Not Available520Open in IMG/M
3300009081|Ga0105098_10184347Not Available956Open in IMG/M
3300009085|Ga0105103_10495694Not Available685Open in IMG/M
3300009152|Ga0114980_10597206Not Available624Open in IMG/M
3300009157|Ga0105092_10007925Not Available5588Open in IMG/M
3300009159|Ga0114978_10189297All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1306Open in IMG/M
3300009165|Ga0105102_10859192All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium520Open in IMG/M
3300009169|Ga0105097_10560538All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium641Open in IMG/M
3300009180|Ga0114979_10744789Not Available552Open in IMG/M
3300010318|Ga0136656_1104727Not Available990Open in IMG/M
3300010354|Ga0129333_11516123Not Available549Open in IMG/M
3300010885|Ga0133913_11822235All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage1522Open in IMG/M
3300011011|Ga0139556_1023150Not Available903Open in IMG/M
3300012013|Ga0153805_1031740Not Available899Open in IMG/M
3300012017|Ga0153801_1024936Not Available1060Open in IMG/M
3300012663|Ga0157203_1035971Not Available685Open in IMG/M
3300013372|Ga0177922_10657442Not Available729Open in IMG/M
3300013372|Ga0177922_10751390Not Available668Open in IMG/M
3300015050|Ga0181338_1008850Not Available1673Open in IMG/M
3300015050|Ga0181338_1036809All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium735Open in IMG/M
3300017700|Ga0181339_1010741Not Available1075Open in IMG/M
3300017707|Ga0181363_1045662All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium795Open in IMG/M
3300017716|Ga0181350_1116150Not Available646Open in IMG/M
3300017716|Ga0181350_1150911Not Available542Open in IMG/M
3300017747|Ga0181352_1093411All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium831Open in IMG/M
3300017747|Ga0181352_1116590Not Available723Open in IMG/M
3300017747|Ga0181352_1132687All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium667Open in IMG/M
3300017754|Ga0181344_1216652All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium534Open in IMG/M
3300017766|Ga0181343_1128189Not Available711Open in IMG/M
3300017766|Ga0181343_1198974Not Available549Open in IMG/M
3300017778|Ga0181349_1199946Not Available691Open in IMG/M
3300017780|Ga0181346_1131201Not Available952Open in IMG/M
3300017784|Ga0181348_1245946Not Available621Open in IMG/M
3300019781|Ga0181360_107053Not Available950Open in IMG/M
3300019781|Ga0181360_117245Not Available590Open in IMG/M
3300019784|Ga0181359_1238037Not Available561Open in IMG/M
3300020172|Ga0211729_10913120Not Available925Open in IMG/M
3300020542|Ga0208857_1020048Not Available1110Open in IMG/M
3300020556|Ga0208486_1033275Not Available773Open in IMG/M
3300022176|Ga0212031_1031698All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium859Open in IMG/M
3300022190|Ga0181354_1136811Not Available776Open in IMG/M
3300022308|Ga0224504_10363139All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium602Open in IMG/M
3300022407|Ga0181351_1193615Not Available687Open in IMG/M
3300022543|Ga0212119_1000956Not Available10573Open in IMG/M
3300024505|Ga0255150_1071370All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium539Open in IMG/M
(restricted) 3300024520|Ga0255047_10064710Not Available1891Open in IMG/M
3300025769|Ga0208767_1225720All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium607Open in IMG/M
3300025889|Ga0208644_1052516All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Rhodopirellula → unclassified Rhodopirellula → Rhodopirellula sp.2248Open in IMG/M
3300027205|Ga0208926_1024865Not Available901Open in IMG/M
3300027278|Ga0208439_1069440Not Available656Open in IMG/M
3300027578|Ga0255075_1092473Not Available522Open in IMG/M
3300027721|Ga0209492_1070298All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1236Open in IMG/M
3300027772|Ga0209768_10147173Not Available1106Open in IMG/M
3300027798|Ga0209353_10075518All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Flammeovirgaceae → Flexithrix → Flexithrix dorotheae1532Open in IMG/M
3300027808|Ga0209354_10028911Not Available2212Open in IMG/M
3300027808|Ga0209354_10070509Not Available1416Open in IMG/M
3300027808|Ga0209354_10133681Not Available1013Open in IMG/M
3300027897|Ga0209254_10680642All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium712Open in IMG/M
(restricted) 3300027970|Ga0247837_1213198All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium791Open in IMG/M
3300031539|Ga0307380_10464468Not Available1123Open in IMG/M
3300031539|Ga0307380_10956679All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium688Open in IMG/M
3300031669|Ga0307375_10298115All Organisms → cellular organisms → Bacteria1035Open in IMG/M
3300031746|Ga0315293_10222805Not Available1541Open in IMG/M
3300031857|Ga0315909_10720954Not Available644Open in IMG/M
3300031951|Ga0315904_10500506Not Available1072Open in IMG/M
3300031963|Ga0315901_10873830All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium643Open in IMG/M
3300031999|Ga0315274_12041547Not Available513Open in IMG/M
3300032053|Ga0315284_11132610Not Available867Open in IMG/M
3300032053|Ga0315284_11703618Not Available656Open in IMG/M
3300032053|Ga0315284_11844533Not Available621Open in IMG/M
3300032053|Ga0315284_12171856Not Available555Open in IMG/M
3300032116|Ga0315903_10889981All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium637Open in IMG/M
3300032275|Ga0315270_10377100Not Available901Open in IMG/M
3300033557|Ga0316617_100232507All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → Fluviicola → unclassified Fluviicola → Fluviicola sp. XM-24bin11500Open in IMG/M
3300033992|Ga0334992_0080031Not Available1782Open in IMG/M
3300034012|Ga0334986_0231106Not Available1016Open in IMG/M
3300034013|Ga0334991_0428806All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium502Open in IMG/M
3300034101|Ga0335027_0437203Not Available838Open in IMG/M
3300034104|Ga0335031_0308871Not Available1026Open in IMG/M
3300034109|Ga0335051_0070515Not Available1843Open in IMG/M
3300034279|Ga0335052_0384878Not Available751Open in IMG/M
3300034279|Ga0335052_0398651All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium733Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake26.00%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater9.00%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment7.00%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment6.00%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater5.00%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake5.00%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater5.00%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater4.00%
Freshwater, PlanktonEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton3.00%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous3.00%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine3.00%
SoilEnvironmental → Terrestrial → Soil → Clay → Unclassified → Soil3.00%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater2.00%
Freshwater LenticEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic2.00%
Freshwater Lake SedimentEnvironmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment2.00%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater2.00%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient2.00%
SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment1.00%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake1.00%
FreshwaterEnvironmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater1.00%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater1.00%
Surface IceEnvironmental → Aquatic → Freshwater → Ice → Unclassified → Surface Ice1.00%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine1.00%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater1.00%
Estuary WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water1.00%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine1.00%
SedimentEnvironmental → Aquatic → Marine → Sediment → Unclassified → Sediment1.00%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil1.00%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000792Marine microbial communities from chronically polluted sediments in the Baltic Sea - site KBA sample SWE 02_21mEnvironmentalOpen in IMG/M
3300002360Freshwater microbial communities from Lake Mendota, WI - 02JUN2010 deep hole epilimnionEnvironmentalOpen in IMG/M
3300002408Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)EnvironmentalOpen in IMG/M
3300002835Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)EnvironmentalOpen in IMG/M
3300003277Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SDEnvironmentalOpen in IMG/M
3300003860Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PLEnvironmentalOpen in IMG/M
3300004481Combined Assembly of Gp0112041, Gp0112042, Gp0112043EnvironmentalOpen in IMG/M
3300005581Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRFEnvironmentalOpen in IMG/M
3300005584Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRFEnvironmentalOpen in IMG/M
3300006735Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaGEnvironmentalOpen in IMG/M
3300007171Combined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Diel cycle-Surface layer) 8 sequencing projectsEnvironmentalOpen in IMG/M
3300007560Estuarine microbial communities from the Columbia River estuary - metaG 1560A-02EnvironmentalOpen in IMG/M
3300007974Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460C_0.2umEnvironmentalOpen in IMG/M
3300008261Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-C-NAEnvironmentalOpen in IMG/M
3300008263Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-53-LTREnvironmentalOpen in IMG/M
3300008266Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NAEnvironmentalOpen in IMG/M
3300009068Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaGEnvironmentalOpen in IMG/M
3300009081Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015EnvironmentalOpen in IMG/M
3300009085Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 10-12cm September2015EnvironmentalOpen in IMG/M
3300009152Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaGEnvironmentalOpen in IMG/M
3300009157Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015EnvironmentalOpen in IMG/M
3300009159Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaGEnvironmentalOpen in IMG/M
3300009165Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015EnvironmentalOpen in IMG/M
3300009169Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015EnvironmentalOpen in IMG/M
3300009180Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaGEnvironmentalOpen in IMG/M
3300010318Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.8_DNAEnvironmentalOpen in IMG/M
3300010354Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNAEnvironmentalOpen in IMG/M
3300010885northern Canada Lakes Co-assemblyEnvironmentalOpen in IMG/M
3300011011Freshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Top - Depth 1mEnvironmentalOpen in IMG/M
3300012013Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 67 - Surface IceEnvironmentalOpen in IMG/M
3300012017Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 1208 - Top - Depth 1mEnvironmentalOpen in IMG/M
3300012663Freshwater microbial communities from Indian River, Ontario, Canada - S50EnvironmentalOpen in IMG/M
3300013372Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPsEnvironmentalOpen in IMG/M
3300015050Freshwater viral communities from Lake Michigan, USA - Sp13.VD.MM110.S.DEnvironmentalOpen in IMG/M
3300017700Freshwater viral communities from Lake Michigan, USA - Sp13.VD.MM110.D.DEnvironmentalOpen in IMG/M
3300017707Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MLB.S.NEnvironmentalOpen in IMG/M
3300017716Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.DCM.DEnvironmentalOpen in IMG/M
3300017747Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.S.NEnvironmentalOpen in IMG/M
3300017754Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.DEnvironmentalOpen in IMG/M
3300017766Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.S.DEnvironmentalOpen in IMG/M
3300017778Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.DEnvironmentalOpen in IMG/M
3300017780Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.D.NEnvironmentalOpen in IMG/M
3300017784Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.D.NEnvironmentalOpen in IMG/M
3300019781Freshwater viral communities from Lake Michigan, USA - Sp13.ND.MM15.S.DEnvironmentalOpen in IMG/M
3300019784Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.DEnvironmentalOpen in IMG/M
3300020172Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1EnvironmentalOpen in IMG/M
3300020542Freshwater microbial communities from Lake Mendota, WI - 05NOV2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020556Freshwater microbial communities from Lake Mendota, WI - 03AUG2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300022176Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v2)EnvironmentalOpen in IMG/M
3300022190Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.NEnvironmentalOpen in IMG/M
3300022308Sediment microbial communities from San Francisco Bay, California, United States - SF_Oct11_sed_USGS_24EnvironmentalOpen in IMG/M
3300022407Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.DEnvironmentalOpen in IMG/M
3300022543Indian_combined assemblyEnvironmentalOpen in IMG/M
3300024505Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Yuk_RepA_8hEnvironmentalOpen in IMG/M
3300024520 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_1EnvironmentalOpen in IMG/M
3300025769Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (SPAdes)EnvironmentalOpen in IMG/M
3300025889Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)EnvironmentalOpen in IMG/M
3300027205Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3 (SPAdes)EnvironmentalOpen in IMG/M
3300027278Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.703 (SPAdes)EnvironmentalOpen in IMG/M
3300027578Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Law_RepA_8hEnvironmentalOpen in IMG/M
3300027721Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015 (SPAdes)EnvironmentalOpen in IMG/M
3300027772Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SD (SPAdes)EnvironmentalOpen in IMG/M
3300027798Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD (SPAdes)EnvironmentalOpen in IMG/M
3300027808Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD (SPAdes)EnvironmentalOpen in IMG/M
3300027897Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - DIP11 DI (SPAdes)EnvironmentalOpen in IMG/M
3300027970 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_14.5mEnvironmentalOpen in IMG/M
3300031539Soil microbial communities from Risofladan, Vaasa, Finland - UN-3EnvironmentalOpen in IMG/M
3300031669Soil microbial communities from Risofladan, Vaasa, Finland - TR-1EnvironmentalOpen in IMG/M
3300031746Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_20EnvironmentalOpen in IMG/M
3300031857Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125EnvironmentalOpen in IMG/M
3300031951Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120EnvironmentalOpen in IMG/M
3300031963Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116EnvironmentalOpen in IMG/M
3300031999Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20EnvironmentalOpen in IMG/M
3300032053Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16EnvironmentalOpen in IMG/M
3300032116Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119EnvironmentalOpen in IMG/M
3300032275Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_bottomEnvironmentalOpen in IMG/M
3300033557Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D2_BEnvironmentalOpen in IMG/M
3300033992Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035EnvironmentalOpen in IMG/M
3300034012Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027EnvironmentalOpen in IMG/M
3300034013Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jun2018-rr0034EnvironmentalOpen in IMG/M
3300034101Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107EnvironmentalOpen in IMG/M
3300034104Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120EnvironmentalOpen in IMG/M
3300034109Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME26Aug2009-rr0158EnvironmentalOpen in IMG/M
3300034279Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2014-rr0163EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
BS_KBA_SWE02_21mDRAFT_1017857123300000792MarineMALVNQVQKKVIMSKKDVIKFQIVTHCYINKIALSDSDFECLTLLSTIGP
B570J29630_101000423300002360FreshwaterMALVIQVQKRAVMPKWEIVKFQILSHCYINRIVVSESDLNCLTLLSI
B570J29032_10980437053300002408FreshwaterMAIVNQVQKRVKMPKWDLVKYQILTHCYINKLSLSESDL
B570J40625_10055010213300002835FreshwaterMALVNQVQKKVMMSREDVIKYQILTHCYINRITVSDSDLECLALLSQIGP
B570J40625_10134854923300002835FreshwaterMALVNQVQKRVKMSKWDVVKFQILTHCYINRITMSESDLNCLTLLSFNEPIELTSF
B570J40625_10177717113300002835FreshwaterMALVNQVQKKVKMPKWDIVKFQILTHCYINRIAMSESDLNCLTLLSFNEP
JGI25908J49247_1000622313300003277Freshwater LakeMALVNQVQKRVKMSKWDIVKFQILTHCYINRITMSESDFDCL
Ga0031658_106656613300003860Freshwater Lake SedimentMALVNQVQKRVKMPKWDIVKFQILTHCYIKRINLSDSDLNCLTLL
Ga0069718_1616567253300004481SedimentMALVTQVEKLVKMSKWDLVKFQIVTHCYINSIIMSDSDLNCLT
Ga0049081_1002388473300005581Freshwater LenticMALVNQVQKRAVMTKWDVIKFQIVTHCYINNITVSDSDLNCLTL
Ga0049082_1033057123300005584Freshwater LenticMALVNQVQKRVKMPKWDIVKFQILTHCYVNHITMSDSDLNCLTLLSF
Ga0098038_122553013300006735MarineMAIVNQVQKRVVMSKKDIIKYQILTHCYINSIMVSNSEL
Ga0102977_102996513300007171Freshwater LakeMALVNQVQKRVRMPKWDIVKFQILTHCYINRVTMSESDL
Ga0102913_126812623300007560EstuarineMALVNQVQKRVKMPKWDIVKFQILTHCYVNKITMSDSDLN
Ga0105747_109919513300007974Estuary WaterMALVNQVQKRVRMPKWEIVKFQILTHCYINRIAVSESDLNCLTLLSFNEPI
Ga0114336_101173363300008261Freshwater, PlanktonMALVNQVQKRAVMPKWEIVKFQILSHCYINRITVSELDYKFLGR*
Ga0114349_121723133300008263Freshwater, PlanktonMALVNQVQKRVKMPKWNIVKYQILTHCYINNITVSNSDL
Ga0114363_118435813300008266Freshwater, PlanktonMALVNQVQKKVVMSKKDIIKFQFITHCYINKIALSD
Ga0114973_1069059813300009068Freshwater LakeMALVNQVQKRVKMPKWDIVKFQILTHCYVNHITMSDSDLNCLTLLSFNQPIELTH
Ga0105098_1018434733300009081Freshwater SedimentMALVNQVQKRVKMPKWDVVKFQILVHCYINRITMSDSDLNCLTLLSLNEPIELT*
Ga0105103_1049569433300009085Freshwater SedimentMALVNQVQKRVKMPKWNIVKYQILTHCYINNITVSNSDLD
Ga0114980_1059720623300009152Freshwater LakeMALVNQVQKRVKMPKWDIVKFQILTHCYIKRINLSDSDLNCLTLLSFNEPI
Ga0105092_1000792583300009157Freshwater SedimentMALVNQVQKRVKMPKWDVVKFQILTHCYINHIAMS*
Ga0114978_1018929713300009159Freshwater LakeMALVNQVQKRVKMSKWEVVKFQILTHCYINKITLSNSDLDCLT
Ga0105102_1085919223300009165Freshwater SedimentMALVNQVQKRVKMPKWDIVKFQILTHCYINRITMSESDLDCLTLLSFNEPI
Ga0105097_1056053813300009169Freshwater SedimentMALVNQVQKRVKMPKWDVVKFQILTHCYVNRITVSESDLNCLTLLSFNEPIE
Ga0114979_1074478913300009180Freshwater LakeMAIVNQVQKRVKMPKWEVVKFQILTHCYVNRITMSDSDLN
Ga0136656_110472733300010318Freshwater To Marine Saline GradientMALVNQVQKRVKLPKWEVVKFQILTHCYINRITMSESDLN
Ga0129333_1151612313300010354Freshwater To Marine Saline GradientMAIVNQVQKRVKMPKWDIVKFQILTHCYIKRINLSDSDLNCLTLLSFNEPIE
Ga0133913_1182223513300010885Freshwater LakeMATVNQVQKKVRMRKWDVVKFQILTHCYINRVVMSDSDLNCLTLLS
Ga0139556_102315013300011011FreshwaterMALVNQVQKRVKMPKWDIVKFQILTHCYVNHITMSDSDLNCLTLLS
Ga0153805_103174013300012013Surface IceMALVNQVQKRVKMPKWDIVKFQILTHCYVNHITMSDSDLNCLT
Ga0153801_102493613300012017FreshwaterMALVNQVQKRVVMSIEDIIKFQILTHCYLSRIMVSDSDINC
Ga0157203_103597113300012663FreshwaterMALVNQVQKRVMMSKNDIIKFQILTHCYINRITMSE
Ga0177922_1065744213300013372FreshwaterMALVNQVQKRAIMTKWDVIKFQIVTHCYINNITVSDSDLNCLTLLSTIGPI
Ga0177922_1075139033300013372FreshwaterMALVIQVQKRAVMPKWEIVKFQILSHCYINRIVVSESDLN
Ga0181338_100885013300015050Freshwater LakeMAIVNQVQKKVRMPKWDVVKFQILTHCYIKRINLSDSDLNCLTLLSF
Ga0181338_103680933300015050Freshwater LakeMALVNQVQKRVKMSKWEVVKFQILTHCYINKITLSNSDLDCLTLLSFNEPIEL
Ga0181339_101074133300017700Freshwater LakeMAIVNQVQKKVRMPKWDVVKFQILTHCYIKRINLS
Ga0181363_104566213300017707Freshwater LakeMALVNQVQKRVMMSKKDVIKFQILTHCYINRITMSESDLDCLTLLSLLGPLSL
Ga0181350_111615033300017716Freshwater LakeMAIVNQVQKKVRMPKWDVVKFQILTHCYIKRINLSDSDLNCLTLLSFNEPIEL
Ga0181350_115091113300017716Freshwater LakeMTLVNQVQKKVKMPKWDIVKYQILTHCYINRITMSDS
Ga0181352_109341113300017747Freshwater LakeMALVNQVQKRVKMPKWDVVKFQILTHCYINRITMSESDLNCLTLLSFNE
Ga0181352_111659013300017747Freshwater LakeMALVNQVQKKVMMPKWNVVKFQILTHCYINNIEMSNSDLN
Ga0181352_113268733300017747Freshwater LakeMALVNQVQKRVKMPKWDVVKFQILTHCYINRITMSESDL
Ga0181344_121665223300017754Freshwater LakeMALVNQVQKRVRMAKWDVVKFQILTHCYINRITVSESD
Ga0181343_112818913300017766Freshwater LakeMALVNQVQKRVKMPKWDVVKLQILTHCYINRITMSE
Ga0181343_119897413300017766Freshwater LakeMALVNQVQKRVKMPKWDVVKFQILTHCYLNRITMSESDLNCLTLLSFNQPIE
Ga0181349_119994613300017778Freshwater LakeMALVNQVQKRAVMPKWEIVKFQILSHCYINHIVVSDSDLN
Ga0181346_113120113300017780Freshwater LakeMAIVNQVQKKVRMPKWDVVKFQILTHCYIKRINLSDSDLNCLTLLSFNEPIE
Ga0181348_124594613300017784Freshwater LakeMAIVNQVQKRVKMPKWDIVKFQILTHCYIKRINLSD
Ga0181360_10705313300019781Freshwater LakeMAIVNQVQKKVRMPKWDVVKFQILTHCYIKRINLSDSDLNCLTLLI
Ga0181360_11724513300019781Freshwater LakeMALVNQVQKRVKMPKWDVVKFQILVHCYINRITMSDSDLNCLT
Ga0181359_123803713300019784Freshwater LakeMAIVNQVQKRVRMPKWDVVKFQILTHCYVNRINLSDSDLNCL
Ga0211729_1091312013300020172FreshwaterMATVNQVQKKVKMPKWDVVKFQILTHCYINRVVMS
Ga0208857_102004823300020542FreshwaterMSAVNQVQKKVIMSKNGIIKYQILTHCYINNIALSDSDFECLTLLTII
Ga0208486_103327513300020556FreshwaterMALVNQVQKRVKMPKWDVVKFQILTHCYINRITMSESD
Ga0212031_103169813300022176AqueousMALVNQVQKRVKMTKWDAVKFQIVTHCYINRITMSESDL
Ga0181354_113681113300022190Freshwater LakeMALVNQVQKRVKMPKWEVVKFQILAHCYINRITMSESDLNCF
Ga0224504_1036313923300022308SedimentMALVNQVQKRVKLPKWEIVKFQILTHCYINGITMSESDLNCLTLLSFNEP
Ga0181351_119361513300022407Freshwater LakeMALVNQVQKRAVMTKWDVIKFQIVTHCYINNITVSDSDLNCLTLLSTTGP
Ga0212119_100095613300022543FreshwaterMALVNQVQKRVRMPKWDIVKFQILTHCYINRVTMS
Ga0255150_107137013300024505FreshwaterMALVNQVQKRVKMPKWDIVKFQILTHCYINRITMSESDLDCLTLLSF
(restricted) Ga0255047_1006471063300024520SeawaterMALVNQVQKRVRMPKWDIVKFQILTHCYINRVTMSDSDLDCLTLLS
Ga0208767_122572013300025769AqueousMALVNQVKKQVQMPKWDLVKYQILTHCYINRITVSDSDLNCLTLLSFNEPVELT
Ga0208644_105251613300025889AqueousMALVNQVKKQVQMPKWDLVKYQILTHCYINRITVSDSDLNCLTLL
Ga0208926_102486543300027205EstuarineMALVNQVQKRVIMNRKDVVKFQILTHCYINNIVVTESDLN
Ga0208439_106944033300027278EstuarineMALVNQVQKRVKMPKWDIVKFQILTHCYINHLTMSESDL
Ga0255075_109247313300027578FreshwaterMAIVNQVQKRVRMPKWDVVKFQILTHCYVNRINLSDSD
Ga0209492_107029813300027721Freshwater SedimentMALVNQVQKRVKMPKWNIVKYQILTHCYINNITVSNSDLDCLTLLSFNEPIELT
Ga0209768_1014717353300027772Freshwater LakeMALVNQVQKRAVMPKWEIVKFQILSHCYINHIVVSDSDL
Ga0209353_1007551843300027798Freshwater LakeMAIVNQVQKKVRMPKWDVVKFQILTHCYIKRINLSDSDLNCLTLLSFNEPIELT
Ga0209354_1002891173300027808Freshwater LakeMALVNQVQKRAVMTKWDVIKFQIVTHCYINNITVSDS
Ga0209354_1007050933300027808Freshwater LakeMAIVNQVQKKVRMPKWDVVKFQILTHCYIKRINLSDSDLNCLTL
Ga0209354_1013368133300027808Freshwater LakeMAIVNQVQKKVRMPKWDVVKFQILTHCYIKRINLSDSDLNCLTLL
Ga0209254_1068064233300027897Freshwater Lake SedimentMALVNQVQKRVRMPKWEIVKFQILTHCYINRIAVSESDLNCLTLLSFNE
(restricted) Ga0247837_121319833300027970FreshwaterMALVNQVQKRVKMSKWDVVKFQILTHCYINKITMSESDLDCI
Ga0307380_1046446813300031539SoilMALVNQVQKRVRMPKWDIVKFQILTHCYINRVTMSDSDLDCLTLLSFNQPIELSNF
Ga0307380_1095667933300031539SoilMALVNQVQKRVKMSKWDIVKFQILTHCYINRITMSESDFDCLTL
Ga0307375_1029811513300031669SoilMALVNQVQKRVRMPKWDIVKFQILTHCYVNRITMSESDLDCLTLLSFNQP
Ga0315293_1022280553300031746SedimentMALVNQVQKRVRMPKWDIVKFQILTHCYIKRITMSDSDLDCLTLLSFNQPIELTA
Ga0315909_1072095413300031857FreshwaterMALVNQVQKKVKMPKWDIVKFQILTYSYINRISLSESDLNCLALL
Ga0315904_1050050643300031951FreshwaterMALVNQVQKRVKMPKWDVVKFQILTHCYINRITMSDSDLNCLTLLSFNQPIE
Ga0315901_1087383033300031963FreshwaterMALVNQVQKRVKMSKWDVVKFQILTHCYINRITMSESDLNCLTLLSFN
Ga0315274_1204154723300031999SedimentMALVNQVQKRVKMPKWDIVKFQILTHCYINHITMSD
Ga0315284_1113261013300032053SedimentMALVIQVQKRAVMPKWEIVKFQILSHCYINRIVVSESDLNCLTL
Ga0315284_1170361823300032053SedimentMAVVNQIEKKAVMTNWDVIKYQIVTHCYISKIQVSEADLECLTYL
Ga0315284_1184453323300032053SedimentMALVNQVQKRVRMSKWNVVKFQILTHCYIKRILLSDSDLNCLTL
Ga0315284_1217185613300032053SedimentMALVNQVQKKVRMPKWDIVKFQILTHCYIKRITMSDSDL
Ga0315903_1088998113300032116FreshwaterMALVNQVQKRVKMTKWDAVKFQILTHCYINRITMSESDLNC
Ga0315270_1037710013300032275SedimentMALVNQVQKRVKMPKWDIVKFQILTHCYVNHITMSDSDLNCLTLLSFNQPI
Ga0316617_10023250713300033557SoilMALVNQVQKRVKMPKWDIVKFQILTHCYINRIAMSESDL
Ga0334992_0080031_2_1123300033992FreshwaterMALVNQVEKRVKMPKWDVVKFQILTHCYVNHITMSDS
Ga0334986_0231106_3_1643300034012FreshwaterMALVNQVQKRVKMPKWDVVKFQILTHCYINHITMSDSDLNCLTLLSFNEPLELT
Ga0334991_0428806_368_5023300034013FreshwaterMALVNQVQKRVRMAKWDVVKFQILTHCYINRITVSESDLNCLTLL
Ga0335027_0437203_1_1233300034101FreshwaterMALVNQVQKKVKMPKWDVVKFQILTYSYINRISLSESDLNC
Ga0335031_0308871_1_1083300034104FreshwaterMALVNQVQKKVIMSKPDVVKFQILTHCYINRITVSE
Ga0335051_0070515_2_1333300034109FreshwaterMALVNQVQKRVRMPKWEVVKFQILTHCYINRIAVSESDLNCLTL
Ga0335052_0384878_637_7503300034279FreshwaterMALVNQVQKKVVMSKKDIIKYQILTHCYISRITLSDSD
Ga0335052_0398651_607_7323300034279FreshwaterMALVNQVQKRVKMPKWDVVKFQILTHCYINHITVSESDLNCL

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.