NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F105101

Metagenome / Metatranscriptome Family F105101

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105101
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 78 residues
Representative Sequence LTRIVIVVVALPPVLLAVTVYDVEDDTAVGVPEISPVEVEKERPAGTDGEIDQDVTAPPLEVGVAVVMAASFVKVNGLPL
Number of Associated Samples 74
Number of Associated Scaffolds 96

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 41.11 %
% of genes near scaffold ends (potentially truncated) 32.00 %
% of genes from short scaffolds (< 2000 bps) 72.00 %
Associated GOLD sequencing projects 70
AlphaFold2 3D model prediction Yes
3D model pTM-score0.17

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (63.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater
(23.000 % of family members)
Environment Ontology (ENVO) Unclassified
(50.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(99.000 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 0.00%    β-sheet: 1.85%    Coil/Unstructured: 98.15%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.17
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 96 Family Scaffolds
PF05345He_PIG 17.71
PF06973DUF1297 1.04



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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A63.00 %
All OrganismsrootAll Organisms37.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000224|SI34jun09_10mDRAFT_1054999Not Available529Open in IMG/M
3300001834|ACM2_1056090All Organisms → cellular organisms → Archaea513Open in IMG/M
3300001956|GOS2266_1022259All Organisms → cellular organisms → Archaea762Open in IMG/M
3300003580|JGI26260J51721_1030879Not Available965Open in IMG/M
3300003580|JGI26260J51721_1043012Not Available737Open in IMG/M
3300003580|JGI26260J51721_1071887All Organisms → cellular organisms → Archaea503Open in IMG/M
3300005510|Ga0066825_10232044All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium680Open in IMG/M
3300005747|Ga0076924_1118568Not Available1567Open in IMG/M
3300005747|Ga0076924_1118568Not Available1567Open in IMG/M
3300005747|Ga0076924_1145985Not Available921Open in IMG/M
3300005837|Ga0078893_10690487All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Leptospirales → Leptospiraceae → Leptospira → Leptospira interrogans1312Open in IMG/M
3300006622|Ga0101442_126587All Organisms → cellular organisms → Archaea2000Open in IMG/M
3300006868|Ga0075481_10212566All Organisms → cellular organisms → Archaea689Open in IMG/M
3300007266|Ga0101450_100702Not Available53674Open in IMG/M
3300007266|Ga0101450_102586All Organisms → cellular organisms → Archaea7197Open in IMG/M
3300007274|Ga0101446_105104Not Available6699Open in IMG/M
3300007274|Ga0101446_120926All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon2092Open in IMG/M
3300007863|Ga0105744_1015643Not Available1939Open in IMG/M
3300007863|Ga0105744_1023740Not Available1543Open in IMG/M
3300007863|Ga0105744_1047835All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon1057Open in IMG/M
3300007956|Ga0105741_1005765Not Available3238Open in IMG/M
3300007992|Ga0105748_10454720Not Available556Open in IMG/M
3300008993|Ga0104258_1009550All Organisms → cellular organisms → Archaea1781Open in IMG/M
3300008993|Ga0104258_1083578Not Available596Open in IMG/M
3300009132|Ga0118730_1212412All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon1119Open in IMG/M
3300009550|Ga0115013_10221231All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon1142Open in IMG/M
3300009606|Ga0115102_10495104Not Available2058Open in IMG/M
3300009608|Ga0115100_10686582Not Available539Open in IMG/M
3300012525|Ga0129353_1158824Not Available1435Open in IMG/M
3300012920|Ga0160423_10509178All Organisms → cellular organisms → Archaea818Open in IMG/M
3300012928|Ga0163110_10005684Not Available6701Open in IMG/M
3300012928|Ga0163110_10155863All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon1586Open in IMG/M
3300012936|Ga0163109_10538144All Organisms → cellular organisms → Archaea855Open in IMG/M
3300012954|Ga0163111_10060810Not Available2979Open in IMG/M
3300013231|Ga0116832_1005457All Organisms → cellular organisms → Archaea1591Open in IMG/M
3300013231|Ga0116832_1058660Not Available610Open in IMG/M
3300013231|Ga0116832_1070019Not Available571Open in IMG/M
3300013253|Ga0116813_1000975Not Available4964Open in IMG/M
3300013253|Ga0116813_1053459Not Available685Open in IMG/M
3300013253|Ga0116813_1060045Not Available651Open in IMG/M
3300017729|Ga0181396_1015214All Organisms → cellular organisms → Archaea1533Open in IMG/M
3300017740|Ga0181418_1115651Not Available649Open in IMG/M
3300017749|Ga0181392_1036949Not Available1523Open in IMG/M
3300017767|Ga0181406_1246482Not Available525Open in IMG/M
3300017782|Ga0181380_1068224Not Available1254Open in IMG/M
3300020191|Ga0181604_10461788All Organisms → cellular organisms → Archaea532Open in IMG/M
3300020267|Ga0211648_1067063All Organisms → cellular organisms → Archaea686Open in IMG/M
3300020282|Ga0211667_1007032Not Available3105Open in IMG/M
3300020282|Ga0211667_1007032Not Available3105Open in IMG/M
3300020314|Ga0211522_1062373All Organisms → cellular organisms → Archaea632Open in IMG/M
3300020360|Ga0211712_10006584Not Available3267Open in IMG/M
3300020365|Ga0211506_1173867All Organisms → cellular organisms → Archaea605Open in IMG/M
3300020377|Ga0211647_10283622Not Available519Open in IMG/M
3300020378|Ga0211527_10132526All Organisms → cellular organisms → Archaea717Open in IMG/M
3300020403|Ga0211532_10272371Not Available657Open in IMG/M
3300020414|Ga0211523_10037115All Organisms → cellular organisms → Archaea2120Open in IMG/M
3300020414|Ga0211523_10082309Not Available1366Open in IMG/M
3300020414|Ga0211523_10337592All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon614Open in IMG/M
3300020416|Ga0211644_10301979All Organisms → cellular organisms → Archaea659Open in IMG/M
3300020454|Ga0211548_10215148All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon933Open in IMG/M
3300020457|Ga0211643_10202621All Organisms → cellular organisms → Archaea976Open in IMG/M
3300021087|Ga0206683_10371305Not Available719Open in IMG/M
3300021087|Ga0206683_10438653Not Available649Open in IMG/M
3300021335|Ga0213867_1019310Not Available2800Open in IMG/M
3300021335|Ga0213867_1019310Not Available2800Open in IMG/M
3300021347|Ga0213862_10165318Not Available778Open in IMG/M
3300021350|Ga0206692_1904234Not Available1027Open in IMG/M
3300021373|Ga0213865_10166377All Organisms → cellular organisms → Archaea1117Open in IMG/M
3300021373|Ga0213865_10166377All Organisms → cellular organisms → Archaea1117Open in IMG/M
3300021373|Ga0213865_10200945Not Available986Open in IMG/M
3300021389|Ga0213868_10089985All Organisms → cellular organisms → Archaea2002Open in IMG/M
3300021425|Ga0213866_10177958All Organisms → cellular organisms → Archaea1114Open in IMG/M
3300021959|Ga0222716_10384030Not Available821Open in IMG/M
3300024188|Ga0228602_1049830Not Available666Open in IMG/M
3300024244|Ga0228678_1026584Not Available1075Open in IMG/M
3300024266|Ga0228661_1065283Not Available676Open in IMG/M
3300024291|Ga0228660_1052619Not Available779Open in IMG/M
3300024320|Ga0233398_1093561Not Available714Open in IMG/M
3300024417|Ga0228650_1087083Not Available861Open in IMG/M
3300024420|Ga0228632_1067698Not Available836Open in IMG/M
3300024420|Ga0228632_1109683All Organisms → cellular organisms → Archaea645Open in IMG/M
3300024428|Ga0233396_1099836All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon699Open in IMG/M
3300025483|Ga0209557_1025324Not Available1817Open in IMG/M
3300026201|Ga0208127_1047183All Organisms → cellular organisms → Archaea1289Open in IMG/M
3300026503|Ga0247605_1069962All Organisms → cellular organisms → Archaea868Open in IMG/M
3300026511|Ga0233395_1166034Not Available508Open in IMG/M
3300028109|Ga0247582_1068767Not Available928Open in IMG/M
3300028279|Ga0228613_1103654Not Available668Open in IMG/M
3300028282|Ga0256413_1000938All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Candidatus Poseidoniia → Candidatus Poseidoniales → environmental samples → uncultured Candidatus Poseidoniales archaeon5790Open in IMG/M
3300031773|Ga0315332_10803859Not Available571Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater23.00%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine19.00%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine9.00%
Estuary WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water7.00%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine6.00%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater6.00%
Surface SeawaterEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater5.00%
Marine Surface WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water4.00%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater4.00%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine3.00%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous2.00%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine2.00%
Marine Surface WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine Surface Water2.00%
Ocean WaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Ocean Water2.00%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater1.00%
Marine PlanktonEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton1.00%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine1.00%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh1.00%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water1.00%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine1.00%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000224Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 34 06/16/09 10mEnvironmentalOpen in IMG/M
3300001834Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM2, ROCA_DNA019_0.2um_2gEnvironmentalOpen in IMG/M
3300001956Marine microbial communities from Rangirora Atoll, Polynesia Archipelagos - GS051EnvironmentalOpen in IMG/M
3300003580Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_120m_DNAEnvironmentalOpen in IMG/M
3300005510Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV45EnvironmentalOpen in IMG/M
3300005747Seawater microbial communities from Vineyard Sound, MA, USA - control T14EnvironmentalOpen in IMG/M
3300005837Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18EnvironmentalOpen in IMG/M
3300006622Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ08 time pointEnvironmentalOpen in IMG/M
3300006868Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNAEnvironmentalOpen in IMG/M
3300007266Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ16 time pointEnvironmentalOpen in IMG/M
3300007274Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ13 time pointEnvironmentalOpen in IMG/M
3300007555Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.555EnvironmentalOpen in IMG/M
3300007863Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1459B_0.2umEnvironmentalOpen in IMG/M
3300007864Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1461B_3.0umEnvironmentalOpen in IMG/M
3300007956Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1459A_0.2umEnvironmentalOpen in IMG/M
3300007992Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1461AB_0.2umEnvironmentalOpen in IMG/M
3300008993Marine microbial communities from eastern North Pacific Ocean - P1 free-livingEnvironmentalOpen in IMG/M
3300009132Combined Assembly of Gp0139359, Gp0139510EnvironmentalOpen in IMG/M
3300009495Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531EnvironmentalOpen in IMG/M
3300009550Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 MetagenomeEnvironmentalOpen in IMG/M
3300009606Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_5May14_M2_3um Metatranscriptome (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300009608Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_2Apr14_M1_3um Metatranscriptome (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012525Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_RNA2 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012920Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaGEnvironmentalOpen in IMG/M
3300012928Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St17 metaGEnvironmentalOpen in IMG/M
3300012936Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St13 metaGEnvironmentalOpen in IMG/M
3300012954Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St18 metaGEnvironmentalOpen in IMG/M
3300013231Marine hypoxic microbial communities from the Gulf of Mexico, USA - 5m_Station5_GOM_MetagenomeEnvironmentalOpen in IMG/M
3300013253Marine hypoxic microbial communities from the Gulf of Mexico, USA - 10m_Station4_GOM_MetagenomeEnvironmentalOpen in IMG/M
3300017729Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 19 SPOT_SRF_2011-01-11EnvironmentalOpen in IMG/M
3300017740Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 41 SPOT_SRF_2013-03-13EnvironmentalOpen in IMG/M
3300017749Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15EnvironmentalOpen in IMG/M
3300017767Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 29 SPOT_SRF_2011-12-20EnvironmentalOpen in IMG/M
3300017782Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 3 SPOT_SRF_2009-08-19EnvironmentalOpen in IMG/M
3300020191Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041410US metaG (spades assembly)EnvironmentalOpen in IMG/M
3300020267Marine microbial communities from Tara Oceans - TARA_B100000927 (ERX556026-ERR599108)EnvironmentalOpen in IMG/M
3300020274Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX556029-ERR598943)EnvironmentalOpen in IMG/M
3300020282Marine microbial communities from Tara Oceans - TARA_B100000963 (ERX556074-ERR599169)EnvironmentalOpen in IMG/M
3300020314Marine microbial communities from Tara Oceans - TARA_B100000035 (ERX556135-ERR598974)EnvironmentalOpen in IMG/M
3300020360Marine microbial communities from Tara Oceans - TARA_B100000459 (ERX555918-ERR599165)EnvironmentalOpen in IMG/M
3300020365Marine microbial communities from Tara Oceans - TARA_B100000034 (ERX555943-ERR599143)EnvironmentalOpen in IMG/M
3300020377Marine microbial communities from Tara Oceans - TARA_B100000927 (ERX556007-ERR599065)EnvironmentalOpen in IMG/M
3300020378Marine microbial communities from Tara Oceans - TARA_B100000066 (ERX556006-ERR599102)EnvironmentalOpen in IMG/M
3300020403Marine microbial communities from Tara Oceans - TARA_B100000085 (ERX556015-ERR599145)EnvironmentalOpen in IMG/M
3300020414Marine microbial communities from Tara Oceans - TARA_B100000035 (ERX556019-ERR599028)EnvironmentalOpen in IMG/M
3300020416Marine microbial communities from Tara Oceans - TARA_B100001109 (ERX556137-ERR599039)EnvironmentalOpen in IMG/M
3300020454Marine microbial communities from Tara Oceans - TARA_B100001769 (ERX556037-ERR599170)EnvironmentalOpen in IMG/M
3300020457Marine microbial communities from Tara Oceans - TARA_B100001113 (ERX555941-ERR599014)EnvironmentalOpen in IMG/M
3300021087Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 80m 12015EnvironmentalOpen in IMG/M
3300021335Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540EnvironmentalOpen in IMG/M
3300021347Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266EnvironmentalOpen in IMG/M
3300021350Metatranscriptome of ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300021373Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282EnvironmentalOpen in IMG/M
3300021389Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO127EnvironmentalOpen in IMG/M
3300021425Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284EnvironmentalOpen in IMG/M
3300021959Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13DEnvironmentalOpen in IMG/M
3300022369Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Washington, United States ? R1119 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024188Seawater microbial communities from Monterey Bay, California, United States - 2DEnvironmentalOpen in IMG/M
3300024244Seawater microbial communities from Monterey Bay, California, United States - 125D_rEnvironmentalOpen in IMG/M
3300024266Seawater microbial communities from Monterey Bay, California, United States - 75DEnvironmentalOpen in IMG/M
3300024291Seawater microbial communities from Monterey Bay, California, United States - 74DEnvironmentalOpen in IMG/M
3300024320Seawater microbial communities from Monterey Bay, California, United States - 38DEnvironmentalOpen in IMG/M
3300024417Seawater microbial communities from Monterey Bay, California, United States - 62DEnvironmentalOpen in IMG/M
3300024420Seawater microbial communities from Monterey Bay, California, United States - 40DEnvironmentalOpen in IMG/M
3300024428Seawater microbial communities from Monterey Bay, California, United States - 32DEnvironmentalOpen in IMG/M
3300025483Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_120m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300026201Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV45 (SPAdes)EnvironmentalOpen in IMG/M
3300026458Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 36R (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300026503Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 91R (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300026511Seawater microbial communities from Monterey Bay, California, United States - 27DEnvironmentalOpen in IMG/M
3300028109Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 41R (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300028279Seawater microbial communities from Monterey Bay, California, United States - 14DEnvironmentalOpen in IMG/M
3300028282Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - WCR_77 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031773Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 34915EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
SI34jun09_10mDRAFT_105499913300000224MarineLTIMVMVVVALPPVLVAVTVYVAEDDTAVGVPETAPVDVENDKPAGSDGVIDQDVTVPPLEVGVSVVMAV
ACM2_105609023300001834Marine PlanktonMVTDAVELPPVLFAYTVYVVEEEIADGVPEISPFEVEKVSPAGRVGEISHDVTAPPLAVGVAVVIAVPFVNVNGLPQ*
GOS2266_102225933300001956MarineLTVMVTVAVELPPVLLAVTVYCAEDVMAVGVPEIAPLVVEKERPAGSVGEIDQEVTVPPRALGVAVVMAVPFVSVNGLLLYTME*
JGI26260J51721_103087943300003580MarineLTIMVMVVVALPPVLVAVTVYVAEDDTAVGVPETAPVDVENDKPAGSDGVIDQDVTVPPLEVGVSVVMAVPFVKLNGVPL*
JGI26260J51721_104301223300003580MarineMFTVAVPLPPALVAVTVYDVDASTAVGVPEIDPFEVEKERPAGRVGEIDQEVTSPPLALGVAVVIAVPLVSVNELGV*
JGI26260J51721_107188713300003580MarineLTRIVIVVVALPPVLLAVTVYDVEDDTAVGVPEISPVEVEKERPAGTDGEIDQDVTAPPLEAGVAVVMAASFV
Ga0066825_1023204423300005510MarineLTVMVTVAVELPPVLLAVTVYCVTDDTAVGVPLMAPVELENRRPAGRVGEMDHEMTAPPPALGVAAVMAVPLVKVNGLPV*
Ga0076924_111856823300005747MarineMFTVAVPLPPALVAVTVYDVDEDTAVGVPEIDPFEVEKERPAGSVGEIDQAVTFPPLALGVAVVIAVPLVSVNELGV*
Ga0076924_111856843300005747MarineLTRIVIVVVALPPVLLAVTVYDVEDDTAVGVPEISPVEVEKERPAGTDGEIDQDVTVPPLEVGVAVVIAVSFVNVNGLPL*
Ga0076924_114598533300005747MarineMFTVAVPLPPALVAVTVYDVDASTAVGVPEIDPFEVEKERPAGSVGEIDQEVTSPPLALGVAVVIAVPLVSVNELGV*
Ga0078893_1069048733300005837Marine Surface WaterLTIMVMVVVALPPVLVAVTVYVAEDDTAVGVPEIAPVDVENDKPAGSDGVIDHDVTVPPLEVGVSVVIAVPFVKLNGVPL*
Ga0101442_12658743300006622Marine Surface WaterLTVMEMVAVALPPVLVAVTVYEVEDEVDVGVPEIAPVDVEKERPAGSVGEIDQEVTVPPLEVGVAVVMVVPLLRENGLPL*
Ga0075481_1021256623300006868AqueousLTVMLMVAVSVPPVLLAVTVYWVVDEIADGVPEISPLVVENVRPAGSEGEIDQEVTAPPLTLGVAVVMAVPLVNVNGVPLYTRE*
Ga0101450_100702273300007266Marine Surface WaterLTRIVIVVVALPPVLLAVTVYDVEVDTAVGVPEISPVEVEKERPAGTAGEIDQEVTGPPLEVGVAVVIAVSFVKLNGVPL*
Ga0101450_10258683300007266Marine Surface WaterMSNGAASLTVMVTDAVALPPVLFAYTVYVVEEEIAVGVPEISPFEVEKVSPAGRVGEIAHDVTAPPLAVGVAVVIAVPFVNVNGLPE*
Ga0101446_10510423300007274Marine Surface WaterMEIVAVALPPVLVAVTVYEVEVEVAVGVPEMAPVVLENERPEGNDGEIDHEETGPPLEVGMAVVMAVPLFSVNGLPL*
Ga0101446_12092633300007274Marine Surface WaterMVTVAVALPPALEAVTVYDVEDDTAVGVPPIAPVEVSKDRPAGSDGEIDQEVGVPPLVVGVTVVIATPFVRIDELGL*
Ga0102817_107783913300007555EstuarineATSLTSMVTVVVPVPPALFAETVYKVVEETAVGVPLIAPVEESRDKPAGSEGVTDQEVTAPPLAVGVTVVMATSFVKV*
Ga0105744_100509033300007863Estuary WaterMVTVVVPVPPALFAETVYKVVEETAVGVPLIAPVEESIIRPAGSDGEIVQEVTAPPLAVGVTVVMATSFVKV*
Ga0105744_101564323300007863Estuary WaterMVMVVVALPPVLVAVTVYVAEDDTAVGVPETAPVDVENDKPAGSDGVIDQDVTVPPLEVGVSVVMAVPFVKLNGVPL*
Ga0105744_102374013300007863Estuary WaterLTRIVIVVVALPPVLLAVTVYDVEDDTTVGVPEISPVEVEKERPAGTDGEIDQDVTAPPLEAGVAVVMAASFVKVNGLPL*
Ga0105744_104783513300007863Estuary WaterMVIIAVALPPEFVAVMVYEADVVMAVGVPEIAPVEVEKARPAGSVGEIVQEVTVPPLEVGVAVVMRESFVSVSELGV*
Ga0105749_116047223300007864Estuary WaterMVTVVVPVPPALFAETVYKVVEETAVGVPLIAPVEESIIRPAGSDGEIVQEVTAPPLAVG
Ga0105741_100576513300007956Estuary WaterTEVGGASLTRIVIVVVALPPVLLAVTVYDVEDDTAVGVPEISPVEVEKERPAGTDGEIDQDVTAPPLEAGVAVVMAASFVKVNGLPL*
Ga0105748_1045472013300007992Estuary WaterVIVVVALPPVLLAVTVYDVEDDTAVGVPEISPVEVEKERPAGTDGEIDQDVTAPPLEAGVAVVMAASFVKVNGLPL*
Ga0104258_100955023300008993Ocean WaterLTRIVIVVVALPPVLLAVTVYDVEDDTAVGVPEISPVEVEKDRPAGTDGEIDQDVTAPPLEAGVAVVMAASFVKVNGLPL*
Ga0104258_108357813300008993Ocean WaterMFTVAVPLPPALVAVTVYDVDASTAVGVPEIDPFEVEKERPAGRVGEIDQEVTSPPLALGVAVVIAVPL
Ga0118730_121241233300009132MarineMVTVAVALPPALEAVTVYDVEDDTAVGVPPIAPVDVSKDRPAGSDGEIDQEVGVPPLAVGVTVVIATPFVRIDELGL*
Ga0115571_1003972193300009495Pelagic MarineLVAETVKIVVGVTAVGVPLIAPVDESILKPAGSDGEIVQEVTAPPLAVGVTVVMATSFVKV*
Ga0115013_1022123123300009550MarineMVTVAVALPPALEAVTVYDVEDDTAVGVPPIAPVEVSKDRPAGSDGEIDQEVAVPPLAVGVTVVIATPFVRIDELGL*
Ga0115102_1044711223300009606MarineMVTVVVPVPPALVAETVYKVVEETAVGVPLIAPVEESIFRPAGSDGEIVQEVTAPPLAVGVTVVMATSFVKV*
Ga0115102_1049510443300009606MarineMVMVAVALPPVLVAVTVYVAEDDTAVGVPETAPVDVENDKPAGSDGVIDQDVTVPPLEVGVSVVMAVPFVKLNGVPL*
Ga0115100_1068658213300009608MarineMVSVAVALPPVLVAVTVYVPEEVMAVGVPLIAPVELENDSPAGSDGETDHDVGVPPLVVGVTVVIVVPF
Ga0129353_115882423300012525AqueousMRILTVTVELPPVLLAVTVYCVSVDITVGVPLMAPVDVENTRPLGSDGEIDHEVTVPPLAVGVAVVMAVPLVNVN
Ga0160423_1050917813300012920Surface SeawaterMLDGPMSLTVMVTVAVELPPVLLAVTVYCVVEETAVGVPEIAPVELENRRPAGKLGEMDHEVTAPPPALGVAVVMAVPFSSVNGLPVYMMEYGEMSLT*
Ga0163110_1000568423300012928Surface SeawaterLTRIEIVVVALPPVLVAVTVYVVEEDTAVGVPLISPVDVLKFNPAGTDGEIDQETTAPPVDDGVAFVMAESFVNVNGLPL*
Ga0163110_1015586313300012928Surface SeawaterMVTVAVALPPALEAVTVYDVEDDTAVGVPPIAPVEVSKDRPAGSDGEIDQEVGVPPLAVGVTVVIATPFVRIDELGL*
Ga0163109_1053814413300012936Surface SeawaterVTLAVELPPVLLAVTVYCVEDEIMVGVPEIAPVAVEKVRPAGREGEIDQDVTVPPRALGVAVVMAVPLVSVNGLPL*
Ga0163111_1006081063300012954Surface SeawaterMVTVAVALPPALEAVKVYDVEDDTAVGVPPIAPVEVSKDRPAGSDGEIDQEVGVPPLAVGVTVVIATPFVRIDELGL*
Ga0116832_100545753300013231MarineMDTLVVALPPLLLAVTVYVAVEVMLVGVPEIAPLVVENDSPAGSDGEIDQDVIVPPLTLGVAVVIAVPLVKVNGVPLYIRE*
Ga0116832_105866013300013231MarineLPPVLVAVTVYCVDEETAVGVPLIAPVEVSKDNPAGTDGEIDQLVTAPPLVVGTSVVIAESFVNVNGFPL*
Ga0116832_107001913300013231MarineMVNVAVPLPPALVAVTVYKVDGDTTDGVPLRAPVDVSKVNPVGTFGEIDQDVAVPPLAVGVTVVIETPFASVNELGE*
Ga0116813_100097593300013253MarineLTRIEIVVVALPPVLVAVTVYVVEEDTAVGVPLSSPVDVLKVNPAGTDGEIDQETTAPPVDVGVAFVMAESFVNVNGLPL*
Ga0116813_105345923300013253MarineVPLPPAFVAVIVYEVRGETTVGVPEISPVEVENDRPIGRSVGEIDQEVTVPPLDVGVAVVIATSFVKVNELGE*
Ga0116813_106004513300013253MarineLVTVNGLPRYATDDGGASLTRIVIDTVILPPVLVAVTVYEAEEDTAVGVPLISPVEVSKFNPAGTDGEIDQDVTGPPLTDGVAVVIAESLVSANGLPL*
Ga0181396_101521433300017729SeawaterLTRIVIVVVALPPVLLAVTVYDVEDDTAVGVPEISPVEVEKERPAGTDGEIDQDVTAPPLEVGVAVVMAASFVKVNGLPL
Ga0181396_107321523300017729SeawaterPLYAIDEGMTSLTTMVTVAEELPPVLVAVTVYEAEVESADGVPEIAPVEVEKVKPAGRDGVIAHKVTVPPLEVGVTVVIALPLVKTDELGL
Ga0181418_111565133300017740SeawaterTVYVAEDDTAVGVPETAPVDVENDKPAGSDGVIDQDVTVPPLEVGVSVVMAVPFVKLNGVPL
Ga0181392_103694963300017749SeawaterVVVALPPVLLAVTVYDVEDDTAVGVPEISPVEVEKERPAGTDGEIDQDVTAPPLEAGVAVVMAASFVKVNGLPL
Ga0181406_124648213300017767SeawaterMFTVAVPLPPALVAVTVYDVDASTAVGVPEIDPFEVEKERPAGRVGEIDQEVTSPPLALGVAVVIAVPLVS
Ga0181380_106822453300017782SeawaterVVVALPPVLLAVTVYDVEEDTAVGVPEISPVEVEKERPAGTDGEIDQDVTAPPLEAGVAVVMAASFVKVNGLPL
Ga0181604_1046178813300020191Salt MarshMSNGAASLTVMVTDAVALPPVLFAYTVYVVEEEIAVGVPEISPFEVEKVSPAGRVGEIAHDVTAPPLAVGVAVVIAVPFVNVNGLPE
Ga0211648_106706313300020267MarineVLLAVTVYCVVEETAVGVPEIAPVELENRRPAGKLGEMDHEVTAPPPALGVAVVMAVPFSSVNGLPVYMMEYGEMSLT
Ga0211658_111745013300020274MarineVMAVPFSAVNELGLNVMPDGAATSTSMVTVVVALPPVLLAVTVYVEDELTAVGVPEIAPVAVSKDRPAGSVGVIDQEMTAPPLDVGVAVVMAASFVSVSVLGL
Ga0211667_1007032123300020282MarineLEGPTSLTVMVTVAVELPPVLLAVTVYCVVEETAVGVPLMAPVELENKRPAGNDGEIDQEVTAPPRTLGVAVVMAVPFSKVKGVPLYTIAYGETSLT
Ga0211667_100703243300020282MarineLTVMVTVAVELPPVLLAVTVNCVEEVMAVGVPEIAPLVVEKERPAGSVGEIDQEVTVPPRALGVAVVMAVPFVSVNGLLLYTME
Ga0211522_106237323300020314MarineSAVVLPPVLVAVTVYEVDDEVDVGVPLMAPVDVEKERPAGSVGEIDQEVAVPPLEVGVAVVMVVPLLRENGLPL
Ga0211712_1000658483300020360MarineMVTVAVALPPALEAVTVYDVEDDTAVGVPPIAPVEVSKDRPAGSDGEIDQEVAVPPLAVGVTVVIATPFVRIDELGL
Ga0211506_117386713300020365MarineLTRIEIVVVALPPVLVAVTVYVVEEETAVGVPLISPLDVLNVKPAGTDGEMDQETTAPPVDVGVAFVMVESFVNVN
Ga0211647_1028362223300020377MarineLTRIEIVVVALPPVLVAVTVYVVEEDTAVGVPLISPVDVLKFNPAGTDGEIDQETTAPPVDDGVAFVMAESFVNVNGLPL
Ga0211527_1013252623300020378MarineLTVMEMVAVALPPVLVAVTVYEVDDEVDVGVPLMAPVDVEKERPAGSVGEIDQEVAVPPLEVGVAVVMVVPLLRENGLPL
Ga0211532_1027237123300020403MarineLTRIEIVVVALPPVLVAVTVYVVEEETAVGVPLISPLDVLNVKPAGTDGEMDQETTAPPVDVGVAFVMVESFVNVNGLPL
Ga0211523_1003711583300020414MarineAMELGAASFTVMDTVVVSLPPLLLAVTVYVAVDVMLVGVPEMAPLVVENDRPAGNDGEIDQEVTVPPLTLGVAVVMAVPLVKVNGVPLYTRE
Ga0211523_1008230943300020414MarineLTRIEIVVVALPPVLVAVTVYVVEEETAVGVPLISPLDVLNVKPAGTDGEMDQETTAPPVDVGVAFVMAESFVNVNGLPL
Ga0211523_1033759223300020414MarineMVTVAVALPPALEAVTVYDVEDDTAVGVPPIAPVEVSKDRPAGSDGEIDQEVGVPPLAVGVTVVIATPFVRIDELGL
Ga0211644_1030197913300020416MarineLPPALEAVTVYDVEDDTAVGVPPIAPVEVSKDRPAGSDGEIDQEVGVPPLAVGVTVVIATPFVRIDELGL
Ga0211548_1021514813300020454MarineMVTVAVALPPALEAVTVYDVEDDTAVGVPPIAPVEVSKDRPAGSDGEIDQEVAVPPLAVGVTVVIATPFVRIDEL
Ga0211643_1020262113300020457MarineLTVMVTVAVELPPVLLAVTVNCVEEVMAVGVPEIAPLVVEKERPAGSVGEIDQEVTVPPRALGVAVVMAVPFVSVN
Ga0206683_1008457023300021087SeawaterLTSMVTVVVPVPPALVAETVYKVVEETAVGVPLIAPVEESIFRPAGSDGEIVQEVTAPPLAVGVTVVMATSFVKV
Ga0206683_1037130533300021087SeawaterVGGASLTIMVMVVVALPPVLVAVTVYVAEDDTAVGVPETAPVDVENDKPAGSDGVIDQDVTVPPLEVGVSVVMAVPFVKLNGVPL
Ga0206683_1043865323300021087SeawaterLTRIVIVVVALPPVLLAVTVYDVEDDTAVGVPEISPVEVEKERPAGTDGEIDQDVTAPPLEAGVAVVMAASFVKVNGLPL
Ga0213867_1019310103300021335SeawaterVAVELPPVLLAVTVYCVTEDTAVGVPLMAPVELENRRPAGKVGEMDHEVTAPPPALGVAVVMAVPLVKVNGLPV
Ga0213867_101931033300021335SeawaterLTVMLMVAVSVPPVLLAVTVYWVVDEIADGVPEISPLVVENVRPAGSEGEIDQEVTAPPLTLGVAVVMAVPLVNVNGVPLYTRE
Ga0213862_1016531823300021347SeawaterLTRIVIVVVALPPVLLAVTVYDVEDDTAVGVPEISPVEVEKERPAGTDGEIDQDVTVPPLEVGVAVVIAASFVNVNGLPL
Ga0206692_190423413300021350SeawaterLTIMVMVVVALPPVLVAVTVYVAEDDTAVGVPESAPVDVENDKPAGSDGVIDQDVTVPPLEVGVSVVMAVPFVKLNGVPL
Ga0213865_1016637713300021373SeawaterLTVMLMVAVSVPPVLLAVTVYWVVDEIADGVPEISPLVVENVRPAGSEGEIDQEVTAPPLTLGVAVVMAVPLV
Ga0213865_1016637723300021373SeawaterLTVMEMVAVALPPVLVAVTVYEVEDEVDVGVPEIAPVEVEKERPAGSVGEIDQEATVPPLEVGVAVVMVVPLLRENGLPL
Ga0213865_1020094523300021373SeawaterMFTVAVPLPPALVAVTVYDVDASTAVGVPEIDPFEVEKERPAGSVGEIDQEVTSPPLALGVAVVIAVPLVSVNELGV
Ga0213868_1008998533300021389SeawaterMFTVAVPLPPALVAVTVYDVDEDTAVGVPEIDPFEVEKERPAGSVGEIDQAVTFPPLALGVAVVIAVPLVSVNELGV
Ga0213866_1017795843300021425SeawaterTVMEMVAVALPPVLVAVTVYEVEDEVDVGVPEIAPVEVEKERPAGSVGEIDQEATVPPLEVGVAVVMVVPLLRENGLPL
Ga0222716_1038403023300021959Estuarine WaterLTIMVMVVVALPPVLVAVTVYVAEDDTAVGVPETAPVDVENDKPAGSDGVIDQDVTVPPLEVGVSVVMAVPFVKLNGLPL
Ga0210310_103346223300022369EstuarineMVTVVVPVPPALFAETVYKVVEETAVGVPLIAPVEESIIRPAGSDGEIVQEVTAPPLAVGVTVVMATSFVKV
Ga0228602_104983013300024188SeawaterMVTIAVALPPEFVAVTVYEVDEVMAVGVPEIAPVEIEKTRPAGSVGVIDQDVTVPPVAVGVAVDMSVSFD
Ga0228678_102658433300024244SeawaterMFTVAVPLPPALVAVTVYDVDASTAVGVPEIDPFEVEKERPAGRVGEIDQEVTSPPLALGVAVVIAVPLVSVNELGV
Ga0228661_106528313300024266SeawaterALPPVLVAVTVYVAEDDTAFGVPETTPVDVENDKPAGSDGVIDQDVTVPPLEVGVSVVMAVPFVKLNGVPL
Ga0228660_105261933300024291SeawaterVPLPPALVAVTVYDVDASTAVGVPEIDPFEVEKERPAGRVGEIDQEVTSPPLALGVAVVIAVPLVSVNELGV
Ga0233398_109356113300024320SeawaterLPPVLVAVTVYVAEDDTAVGVPETAPVDVENDKPAGSDGVIDQDVTVPPLEVGVSVVMAVPFVKLNGVPL
Ga0228650_108708333300024417SeawaterLTIMVMVVVALPPVLVAVTVYVAEDDTAVGVPETAPVDVENDKPAGSDGVIDQDVTVPPLEVGVSVVMAVPFVKLNGVPL
Ga0228632_106769823300024420SeawaterLTIMVMVAVALPPVLVAVTVYVAEDDTAVGVPETAPVDVENDKPAGSDGVIDQDVTVPPLEVGVSVVMAVPFVKLNGVPL
Ga0228632_110968323300024420SeawaterPPVLLAVTVYDVEDDTAVGVPEISPVEVEKERPAGTDGEIDQDVTAPPLEAGVAVVMAASFVKVNGLPL
Ga0233396_109983623300024428SeawaterMVIIAVALPPEFVAVMVYEADVVMAVGVPEIAPVEVEKARPAGSVGEIVQEVTVPPLEVGVAVVMRESFVSVSELGV
Ga0209557_102532423300025483MarineMVVVALPPVLVAVTVYVAEDDTAVGVPETAPVDVENDKPAGSDGVIDQDVTVPPLEVGVSVVMAVPFVKLNGVPL
Ga0208127_104718343300026201MarineLTVMEMVAVALPPVLVAVTVYEVEDEVAVGVPEIAPVDVEKERPAGSVGEIDQEVTVPPLEVGVAVVMAVPLLRENGLPL
Ga0247578_107542313300026458SeawaterVLVAVTVYEAEVESADGVPEMAPVEVSNDKPAGRVGVIAHKSTVPPLEVGVAVVIATSFVKVSVLLL
Ga0247605_106996233300026503SeawaterLTRIVIVVVALPPVLLAVTVYDVEDDTAVGVPEISPVEVEKERPAGTDGEIDQDVTAPPLEAGVAVVMAASFVKVNG
Ga0233395_116603413300026511SeawaterLTRIVIVVVALPPVLLAVTVYDVEDDTAVGVPEISPVEVEKERPAGTDGEIDQDVTAPPLEAGVAVVMAASFVKANGLPL
Ga0247582_106876713300028109SeawaterLTIMVMVVVALPPVLVAVTVYVAEDDTAVGVPETAPVDVENDKPAGSDGVIDQDVTVPPLEVGVSVVMAVPFIKLNRVPL
Ga0228613_110365413300028279SeawaterMFTVAVPLPPALVAVTVYDVDASTAVGVPEIDPFEVEKERPAGSVGEIDQEVTSPPLAIGVAVVIAVPLVSVNELGV
Ga0256413_100093813300028282SeawaterMVVVALPPVLVAVTVYVAEDDTAVGVPETAPVDVENDKPAGSDGVIDQDVTVPPLEVGVSVVMAVPFVKLNGVP
Ga0315332_1080385913300031773SeawaterLAVTVYDVEDDTAVGVPEISPVEVEKERPAGTDGEIDQDVTAPPLEAGVAVVMAASFVKVNGLPL


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