NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F105114

Metagenome / Metatranscriptome Family F105114

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F105114
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 95 residues
Representative Sequence AGRAKIMISGRTSEWHSLSVQQRDTVGLLVARVIEKPVSPCTSQAYYRLQVDKEPAVEGPDCGFPERQLEFRALTALLENAFGV
Number of Associated Samples 89
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 2.04 %
% of genes near scaffold ends (potentially truncated) 94.00 %
% of genes from short scaffolds (< 2000 bps) 87.00 %
Associated GOLD sequencing projects 85
AlphaFold2 3D model prediction Yes
3D model pTM-score0.56

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (52.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(49.000 % of family members)
Environment Ontology (ENVO) Unclassified
(50.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(54.000 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 30.36%    β-sheet: 16.07%    Coil/Unstructured: 53.57%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.56
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF08241Methyltransf_11 39.00
PF01230HIT 12.00
PF13649Methyltransf_25 7.00
PF13191AAA_16 2.00
PF12900Pyridox_ox_2 2.00
PF13489Methyltransf_23 1.00
PF13292DXP_synthase_N 1.00
PF027373HCDH_N 1.00
PF02780Transketolase_C 1.00
PF00694Aconitase_C 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG0240Glycerol-3-phosphate dehydrogenaseEnergy production and conversion [C] 1.00
COG0287Prephenate dehydrogenaseAmino acid transport and metabolism [E] 1.00
COG0677UDP-N-acetyl-D-mannosaminuronate dehydrogenaseCell wall/membrane/envelope biogenesis [M] 1.00
COG1004UDP-glucose 6-dehydrogenaseCell wall/membrane/envelope biogenesis [M] 1.00
COG12503-hydroxyacyl-CoA dehydrogenaseLipid transport and metabolism [I] 1.00
COG1748Saccharopine dehydrogenase, NADP-dependentAmino acid transport and metabolism [E] 1.00
COG20843-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenaseLipid transport and metabolism [I] 1.00

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms52.00 %
UnclassifiedrootN/A48.00 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000787|JGI11643J11755_11365267All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales1149Open in IMG/M
3300000891|JGI10214J12806_12781351Not Available535Open in IMG/M
3300004114|Ga0062593_102627849All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides mesophilus572Open in IMG/M
3300004157|Ga0062590_102990738Not Available506Open in IMG/M
3300005093|Ga0062594_103044347Not Available524Open in IMG/M
3300005334|Ga0068869_102064563Not Available512Open in IMG/M
3300005347|Ga0070668_100013659All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia6063Open in IMG/M
3300005441|Ga0070700_100599516Not Available863Open in IMG/M
3300005539|Ga0068853_100667645Not Available990Open in IMG/M
3300005547|Ga0070693_101224224All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides mesophilus577Open in IMG/M
3300005562|Ga0058697_10815435All Organisms → cellular organisms → Bacteria506Open in IMG/M
3300005578|Ga0068854_101555030Not Available602Open in IMG/M
3300006581|Ga0074048_13269329Not Available647Open in IMG/M
3300006853|Ga0075420_101874846Not Available512Open in IMG/M
3300006918|Ga0079216_11036202All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides mesophilus638Open in IMG/M
3300009092|Ga0105250_10508341Not Available548Open in IMG/M
3300009093|Ga0105240_12194949All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides mesophilus573Open in IMG/M
3300009610|Ga0105340_1483940All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides mesophilus553Open in IMG/M
3300010036|Ga0126305_10079376Not Available1930Open in IMG/M
3300010371|Ga0134125_10645552All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1169Open in IMG/M
3300012481|Ga0157320_1007584Not Available780Open in IMG/M
3300012502|Ga0157347_1049912All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides mesophilus575Open in IMG/M
3300012503|Ga0157313_1056354All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria525Open in IMG/M
3300012506|Ga0157324_1020320Not Available669Open in IMG/M
3300012908|Ga0157286_10060888Not Available1001Open in IMG/M
3300012915|Ga0157302_10084897Not Available969Open in IMG/M
3300012916|Ga0157310_10405079Not Available568Open in IMG/M
3300012937|Ga0162653_100012568Not Available1046Open in IMG/M
3300012989|Ga0164305_10051912All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Dermatophilaceae → Kineosphaera → Kineosphaera limosa → Kineosphaera limosa NBRC 1003402404Open in IMG/M
3300013096|Ga0157307_1158972Not Available532Open in IMG/M
3300013297|Ga0157378_12865467Not Available535Open in IMG/M
3300015077|Ga0173483_10041447All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1724Open in IMG/M
3300015371|Ga0132258_11418613All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1754Open in IMG/M
3300015372|Ga0132256_102976017All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria570Open in IMG/M
3300015373|Ga0132257_100668776All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales1288Open in IMG/M
3300015374|Ga0132255_100117725All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Friedmanniella3644Open in IMG/M
3300017792|Ga0163161_11641317Not Available568Open in IMG/M
3300017965|Ga0190266_11295699Not Available511Open in IMG/M
3300018027|Ga0184605_10531907Not Available508Open in IMG/M
3300018028|Ga0184608_10496916All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides mesophilus522Open in IMG/M
3300018051|Ga0184620_10005281All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2689Open in IMG/M
3300018067|Ga0184611_1238215Not Available646Open in IMG/M
3300018076|Ga0184609_10216603Not Available894Open in IMG/M
3300018082|Ga0184639_10358011Not Available760Open in IMG/M
3300019356|Ga0173481_10367350All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides mesophilus693Open in IMG/M
3300019876|Ga0193703_1027216Not Available885Open in IMG/M
3300021078|Ga0210381_10129543Not Available842Open in IMG/M
3300021363|Ga0193699_10307291All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides mesophilus661Open in IMG/M
3300022756|Ga0222622_10114559All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1683Open in IMG/M
3300022756|Ga0222622_11002678All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides mesophilus613Open in IMG/M
3300022901|Ga0247788_1123899Not Available522Open in IMG/M
3300025935|Ga0207709_10146933All Organisms → cellular organisms → Bacteria1628Open in IMG/M
3300026023|Ga0207677_10988096All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides mesophilus763Open in IMG/M
3300026041|Ga0207639_10336013All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1345Open in IMG/M
3300026067|Ga0207678_11078430Not Available711Open in IMG/M
3300028608|Ga0247819_10312391Not Available884Open in IMG/M
3300028704|Ga0307321_1077939All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides mesophilus655Open in IMG/M
3300028707|Ga0307291_1030040Not Available1267Open in IMG/M
3300028708|Ga0307295_10010423All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2190Open in IMG/M
3300028709|Ga0307279_10070133Not Available607Open in IMG/M
3300028710|Ga0307322_10007529All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2363Open in IMG/M
3300028712|Ga0307285_10028204Not Available1328Open in IMG/M
3300028717|Ga0307298_10137735All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides mesophilus705Open in IMG/M
3300028719|Ga0307301_10005263All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3606Open in IMG/M
3300028719|Ga0307301_10186369All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides mesophilus672Open in IMG/M
3300028721|Ga0307315_10158557Not Available689Open in IMG/M
3300028722|Ga0307319_10038233Not Available1495Open in IMG/M
3300028722|Ga0307319_10143597All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides mesophilus773Open in IMG/M
3300028754|Ga0307297_10075593Not Available1077Open in IMG/M
3300028754|Ga0307297_10300703All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides mesophilus579Open in IMG/M
3300028755|Ga0307316_10001517All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Friedmanniella7258Open in IMG/M
3300028755|Ga0307316_10176389All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides mesophilus766Open in IMG/M
3300028778|Ga0307288_10369477Not Available580Open in IMG/M
3300028787|Ga0307323_10275509Not Available605Open in IMG/M
3300028791|Ga0307290_10198503Not Available735Open in IMG/M
3300028796|Ga0307287_10216959Not Available725Open in IMG/M
3300028807|Ga0307305_10001653All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales8893Open in IMG/M
3300028810|Ga0307294_10223464All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides mesophilus658Open in IMG/M
3300028810|Ga0307294_10315795All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides mesophilus570Open in IMG/M
3300028811|Ga0307292_10433385All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides mesophilus560Open in IMG/M
3300028819|Ga0307296_10427307All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides mesophilus724Open in IMG/M
3300028819|Ga0307296_10595655All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides mesophilus605Open in IMG/M
3300028824|Ga0307310_10047334All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1785Open in IMG/M
3300028828|Ga0307312_10002397All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria9777Open in IMG/M
3300028828|Ga0307312_10844461All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides mesophilus607Open in IMG/M
3300028875|Ga0307289_10174035Not Available885Open in IMG/M
3300028876|Ga0307286_10000500All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria11152Open in IMG/M
3300028876|Ga0307286_10129185Not Available898Open in IMG/M
3300028876|Ga0307286_10338880All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria559Open in IMG/M
3300028880|Ga0307300_10212517Not Available630Open in IMG/M
3300028884|Ga0307308_10117703All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales1267Open in IMG/M
3300028885|Ga0307304_10497957Not Available558Open in IMG/M
3300031091|Ga0308201_10179887Not Available685Open in IMG/M
3300031093|Ga0308197_10281080All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides mesophilus605Open in IMG/M
3300031114|Ga0308187_10215346All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides mesophilus680Open in IMG/M
3300031548|Ga0307408_102149859Not Available539Open in IMG/M
3300031911|Ga0307412_11579609All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria598Open in IMG/M
3300032159|Ga0268251_10596887All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria507Open in IMG/M


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil49.00%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment7.00%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere4.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil3.00%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere3.00%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere3.00%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment2.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil2.00%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere2.00%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere2.00%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere2.00%
AgaveHost-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave2.00%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment1.00%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil1.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.00%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.00%
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil1.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil1.00%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil1.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil1.00%
SoilEnvironmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil1.00%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.00%
Arabidopsis RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Unclassified → Arabidopsis Rhizosphere1.00%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere1.00%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.00%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.00%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere1.00%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.00%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere1.00%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere1.00%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere1.00%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000787Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300000891Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soilEnvironmentalOpen in IMG/M
3300004114Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5EnvironmentalOpen in IMG/M
3300004157Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2EnvironmentalOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005334Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2Host-AssociatedOpen in IMG/M
3300005347Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaGHost-AssociatedOpen in IMG/M
3300005441Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaGEnvironmentalOpen in IMG/M
3300005539Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2Host-AssociatedOpen in IMG/M
3300005547Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaGEnvironmentalOpen in IMG/M
3300005562Agave microbial communities from Guanajuato, Mexico - As.Ma.eHost-AssociatedOpen in IMG/M
3300005578Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2Host-AssociatedOpen in IMG/M
3300006581Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006853Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4Host-AssociatedOpen in IMG/M
3300006918Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100EnvironmentalOpen in IMG/M
3300009092Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaGHost-AssociatedOpen in IMG/M
3300009093Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaGHost-AssociatedOpen in IMG/M
3300009610Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700EnvironmentalOpen in IMG/M
3300010036Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26EnvironmentalOpen in IMG/M
3300010371Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1EnvironmentalOpen in IMG/M
3300012481Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.1.yng.040610Host-AssociatedOpen in IMG/M
3300012502Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.2.yng.040610Host-AssociatedOpen in IMG/M
3300012503Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.5.old.080610_RHost-AssociatedOpen in IMG/M
3300012506Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.6.old.040610Host-AssociatedOpen in IMG/M
3300012507Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.7.yng.070610Host-AssociatedOpen in IMG/M
3300012908Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1EnvironmentalOpen in IMG/M
3300012915Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2EnvironmentalOpen in IMG/M
3300012916Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S213-509R-2EnvironmentalOpen in IMG/M
3300012937Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t5i015EnvironmentalOpen in IMG/M
3300012989Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MGEnvironmentalOpen in IMG/M
3300013096Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2EnvironmentalOpen in IMG/M
3300013297Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaGHost-AssociatedOpen in IMG/M
3300015077Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)EnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300017792Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaGHost-AssociatedOpen in IMG/M
3300017965Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 TEnvironmentalOpen in IMG/M
3300018027Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coexEnvironmentalOpen in IMG/M
3300018028Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coexEnvironmentalOpen in IMG/M
3300018051Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1EnvironmentalOpen in IMG/M
3300018067Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coexEnvironmentalOpen in IMG/M
3300018076Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coexEnvironmentalOpen in IMG/M
3300018082Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2EnvironmentalOpen in IMG/M
3300019356Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)EnvironmentalOpen in IMG/M
3300019876Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3a2EnvironmentalOpen in IMG/M
3300021078Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redoEnvironmentalOpen in IMG/M
3300021363Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2EnvironmentalOpen in IMG/M
3300022756Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1EnvironmentalOpen in IMG/M
3300022901Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S156-409C-4EnvironmentalOpen in IMG/M
3300025935Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026023Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026041Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026067Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300028608Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Xylose_Day6EnvironmentalOpen in IMG/M
3300028704Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_379EnvironmentalOpen in IMG/M
3300028707Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_148EnvironmentalOpen in IMG/M
3300028708Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152EnvironmentalOpen in IMG/M
3300028709Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_118EnvironmentalOpen in IMG/M
3300028710Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380EnvironmentalOpen in IMG/M
3300028712Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_139EnvironmentalOpen in IMG/M
3300028717Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158EnvironmentalOpen in IMG/M
3300028719Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182EnvironmentalOpen in IMG/M
3300028721Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_355EnvironmentalOpen in IMG/M
3300028722Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368EnvironmentalOpen in IMG/M
3300028754Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157EnvironmentalOpen in IMG/M
3300028755Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356EnvironmentalOpen in IMG/M
3300028778Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142EnvironmentalOpen in IMG/M
3300028787Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381EnvironmentalOpen in IMG/M
3300028791Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144EnvironmentalOpen in IMG/M
3300028796Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141EnvironmentalOpen in IMG/M
3300028807Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186EnvironmentalOpen in IMG/M
3300028810Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_151EnvironmentalOpen in IMG/M
3300028811Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149EnvironmentalOpen in IMG/M
3300028819Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153EnvironmentalOpen in IMG/M
3300028824Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197EnvironmentalOpen in IMG/M
3300028828Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202EnvironmentalOpen in IMG/M
3300028875Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143EnvironmentalOpen in IMG/M
3300028876Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140EnvironmentalOpen in IMG/M
3300028880Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_181EnvironmentalOpen in IMG/M
3300028884Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195EnvironmentalOpen in IMG/M
3300028885Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185EnvironmentalOpen in IMG/M
3300031091Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031093Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031114Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031548Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3Host-AssociatedOpen in IMG/M
3300031911Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1Host-AssociatedOpen in IMG/M
3300032159Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)Host-AssociatedOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI11643J11755_1136526713300000787SoilIDGAGRAMITISGRESELHSLSVQQRDTIRLLIARITEMPVTPCTSKAYYRLRVDKEPAVSGPDCGFPERRPEFRALTGLLETAFGV*
JGI10214J12806_1278135113300000891SoilCGAALEPTPAFDEIVSIVTPALRGNFDGPVDTTEPRLFPMRLKRLEVQDQPAYTIKIDGAGRAMITMSRRESELHDLSVQQRDTIRLLVARITEMPVAPCTSKAYYQLRVDTVPAVSGPIAAFRGESRNSVR*
Ga0062593_10262784913300004114SoilGHFDGPVDTAEPRLFPLRLERIQHQDQPAYAITIDAAARAKIMISGRTSEWHALSVQQRDTVRLLVARVIEKPVEPCTSQPASYQLQVEKEPAVAGPDCGFPERQPEFRALTVLLENAFGVRWARH*
Ga0062590_10299073823300004157SoilGRRSESHDLSIQQRDTVRLLLARLIETPVVPCTAVAHYQLHIDTNNSGPKISGPDCGFPQRQPEFRALTVLLENAFGV*
Ga0062594_10304434713300005093SoilGILAPALRGNFDGPADTAEPRLFPMSLQRIQLQDRPAYVIKIDAAGRAKIMISGRTSEWHSLSVQQRDTVRLLVARVIEKPVSPCTSQAYYRLQLHKEPAVEGPDCGFPERQLEFRALTALLENAFGV*
Ga0068869_10206456313300005334Miscanthus RhizosphereAFDEITGILAPALRGNFDGPADTAEPRLFPMSLQRIQLQDRPAYVIKIDAAGRAKIMISGRTSEWHSLSVQQRDTVRLLVARVIEKPVSPCTSQAYYRLQLHKEPAVEGPDCGFPERQLEFRALTALLENAFGV*
Ga0070668_10001365913300005347Switchgrass RhizosphereTAEPRLFPMSLQRIQLQDRLAYVIKVDTAGRAKIMISGRTSEWHSLSVQQRDTVRLLVARVIEKPVSPCTSQAYYRLQLHKEPAVEGPDCGFPERQLEFRALTALLENAFGV*
Ga0070700_10059951623300005441Corn, Switchgrass And Miscanthus RhizosphereLSVQQRDTVRLLVARVIEKPVSPCTSQAYYRLQLHKEPAVEGPDCGFPERQLEFRALTALLENAFGV*
Ga0068853_10066764513300005539Corn RhizosphereRIQLQDRPAYVIKIDAAGRAKIMISGRTSEWHSLSVQQRDTVRLLVARVIEKPVSPCTSQAYYRLQLHKEPAVEGPDCGFPERQLEFRALTALLENAFGV*
Ga0070693_10122422413300005547Corn, Switchgrass And Miscanthus RhizosphereSLSVQQRDTVRLLVARVIEKPVSPCTSQAYYRLQLHKEPAVEGPDCGFPERQLEFRALTALLENAFGV*
Ga0058697_1081543523300005562AgaveIQQRDTVRLLLARLLETPVVPCTSTVRYRLQIDPEPPDFGPKISGPDCGFPQRQPEFRALTTLLENAFGV*
Ga0068854_10155503023300005578Corn RhizosphereAFDEITGILAPALRGNFDGPADTAEPRLFPMSLQRIQLQDRPAYVIKIDAAGRAKIMMSGRTSEWHSLSVQQRDTVRLLVARVIEKPVSPCTSQAYYRLQLHKEPAVEGPDCGFPERQLEFRALTALLENAFGV*
Ga0074048_1326932913300006581SoilLSVPERDTLRLLLARVIEKPIAPCTAPAYYRLHVDKEVPVDGPDCGFPDRQPEFRALAAMLEHDFGV*
Ga0075420_10187484623300006853Populus RhizosphereIQQRDTVRLLQARIIDEPVVPCTSTAYYQLHVDTEPAVSGPDCGFPQRQPEFRALTVLLETAFGV*
Ga0079216_1103620213300006918Agricultural SoilRDTLRLLLARIIEKPVVPCTPSGHYQLRVEKRPAVIGPECGFPERQREFHAVTVLLEEAFNA*
Ga0105250_1050834113300009092Switchgrass RhizosphereAKIMISGRTSEWHSLSVQQRDTVRLLVARVIEKPVSPCTSQAYYRLQLHKEPAVEGPDCGFPERQLEFRALTALLENAFGV*
Ga0105240_1219494923300009093Corn RhizosphereFPMSLQRIQLQDRPAYVIKIDAAGRAKIMISGRTSEWHSLSVQQRDTVRLLVARVIEKPVSPCTSQAYYRLQLHKEPAVEGPDCGFPERQLEFRALTALLENAFGV*
Ga0105340_148394023300009610SoilTSELHELSIQQRDTVRMLLARLIEKPVVPCTSTGYYRLQVDTEPAVSGPDCGFPQRQIEFRALTVLLETAFGV*
Ga0126305_1007937633300010036Serpentine SoilMITIAGRQSELHELSIQQRDTVRLLLARVIEKPVVPCTTTAHYRLHVDKEPPVSGPDCGFPQRQLEFRALTVLLETAFGI*
Ga0134125_1064555213300010371Terrestrial SoilSGQTSEWHSLSVQQRDTVRLLVARVIEEPVSPCTSQAYYRLQVDKEPAAEGPDCGFPERQLEFRALTALLENAFGV*
Ga0157320_100758423300012481Arabidopsis RhizosphereDEITGILAPALRGDFDGPADTAQPRLFPMSLERIQLQDRPAYLIKIDAAGRAKIMMSGRTSEWHSLSVQQRDALRLLVARVIEKPVSPCTSQAHYRLQVDKQPAVEGPDCGFPERQLEFRALTALLENAFGV*
Ga0157347_104991213300012502Arabidopsis RhizosphereQDEPAYVITIDAAARAKIMISGRTPEWRALSVQQRDTVRLLIARVVEEPVEPCTSQPAFYQLQVEKEPAVAGPDCGFPQRQPEFHALTAVLENALGV*
Ga0157313_105635413300012503Arabidopsis RhizosphereLSIPQRDTVRLLEARLSETAVVPCTSPAQYQLQIDPASKDPGPKVSGPDCAFPQRQPEFHALTTLLENAFGV*
Ga0157324_102032013300012506Arabidopsis RhizosphereLRGDFDGPADTAQPRLFPMSLERIQLQDRPAYLIKIDAAGRAKIMMSGRTSEWHSLSVQQRDALRLLVARVIEKPVSPCTSQAHYRLQVDKQPAVEGPDCGFPERQLEFRALTALLENAFGV*
Ga0157342_100316013300012507Arabidopsis RhizosphereEPTPAFDEITGILAPALRGDFDGPADTAQPRLFPMSLERIQLQDRPAYLIKIDAAGRAKIMMSGRTSEWHSLSVQQRDALRLLVARVIEKPVSPCTSQAHYRLQVDKQPAVEGPDCGFPERQLEFRALTALLENAFGV*
Ga0157286_1006088813300012908SoilIQHQDQHAYLITIEAAARAKIMTSGRTPEWHALSVPQRDTVRLLTARVIEKPVLPCTSQPASYELQVEKEPAVTGPDCGFPERQPEFHALTALLENAFGV*
Ga0157302_1008489723300012915SoilLFPTLLERIQLQDRPAYVIKIDAAGRAKIMISGRTSEWHSLSVQQRDTFRLLVARVIENPASPCTSQAYYRLQVDKEPVVEGPDCGFPERQLEFRALTALLENAFGV*
Ga0157310_1040507913300012916SoilMITITARTSEFHDLSIQQRDTVRLLLARLIETPVVPCTSTAHYQVHIDTGPNKSEPNNSGGPDCGFPQRQPEFRALTMLLENAFGV*
Ga0162653_10001256833300012937SoilDTAGRAKIMISGRTSEWHSLSVQQRDTVGLLVARVIEKPVSPCTSQAYYRLQVDKEPAVEGPDCGFPERQLEFRALTALLENAFGV*
Ga0164305_1005191243300012989SoilTGILAPALRSDFDGPTDTAEPQLFPTSLQRIQLQDRPAYVIKIDAAGRAKIMISGQTSEWHSLSVQQRDTVRLLVARVIEEPVSPCTSQAYYRLQVDKEPAAEGPDCGFPERQLEFRALTALLENAFGV*
Ga0157307_115897223300013096SoilAFDEITGILAPALRGDFGGPADTAKPQLFPTLLQRIQLQDRPAYVIKIDAAGRAKIMISGQTSEWHSLSVQQRDTVRLLVARVIEEPVSPCTSQAYYRLQVDKEPAAEGSDCGFPERQLEFRALTALLENAFGV*
Ga0157378_1286546723300013297Miscanthus RhizosphereDGPADTAKPQLFPTLLQRIQLQDRPAYVIKIDAAVRAKIMISGRTSEWHSLSVQQRDTVRLLVARVIEKPVSPCTSQAYYRLQLHKEPAVEGPDCGFPERQLEFRALTALLENAFGV*
Ga0173483_1004144743300015077SoilGPVDTAEPRLFPLRLERIQHQDQPAYAITIDAAARAKIMISGRTSEWHALSVQQRDTVRLLVARVIEKPVEPCTSQPASYQLQVEKEPAVAGPDCGFPERQPEFRALTVLLENAFGV*
Ga0132258_1141861333300015371Arabidopsis RhizosphereLAVPERDTLRLLLARVIEKPVVPCTAPAHYRLHVDREAPVDGPDCGFPERQPEFRALAAMLENDFGV*
Ga0132256_10297601713300015372Arabidopsis RhizosphereRMEGRTSEWHDLSIPQRDTVRLLEARLSETAVVPCTSPAQYQLQIDPASKDPGPKVSGPDCAFPQRQQEFHALTTLLENAFGV*
Ga0132257_10066877613300015373Arabidopsis RhizosphereIDAAGRAMIRMEGRMSEWHDLSIPQRDTVRLLEARLSETAVVPCTSPAQYQLQIDPASKVPGPKVSGPDCAFPQRQPEFHALTTLLENAFGV*
Ga0132255_10011772513300015374Arabidopsis RhizosphereMIRMERRTSEWHDLSIPQRDTVRLLEARLSETAVVPCTSPAQYQLQIDPASKDPGPKVSGPDCAFPQRQPEFHALTTLLENAFGV*
Ga0163161_1164131723300017792Switchgrass RhizosphereSLQRIQLQDRLAYVIKVDTAGRAKIMISGRTSEWHSLSVQQRDTVRLLVARVIEKPVSPCTSQAYYRLQLHKEPAVEGPDCGFPERQLEFRALTALLENAFGV
Ga0190266_1129569913300017965SoilAEPRLFPMSLQRVQLQDRPAYTIKIDNRGRAMIMISGRTSEWHSLSVQQRDTVRLLMARVIDKPVAPCTWETGYRLHVDTEPAVEGPDCGFPQRQQEFHALTAMLEDAFGV
Ga0184605_1053190713300018027Groundwater SedimentITVSGRTSDLHALSVPERDTLRLLLARVIEKPVAPCTAPAHYRLHVDKEAPVDGPDCGFPERQPEFSALAAMLENDFGV
Ga0184608_1049691623300018028Groundwater SedimentPMSLQRIQLQDRPAYVIKIDAAGRAKIMISGRTSEWHSLSVQQRDTVRLLVARVIENPVSPCTSQAYYRLQVDKEPVVQGPDCGFPERQLEFRTLTALLENAFGV
Ga0184620_1000528153300018051Groundwater SedimentTQFQDRPAYAIKVDAAGRAMIMISGRTSEWHSLSVQQRDTVRLLVARVIEKPVAPCTSQADYRLHVDTEPAVEGPDCGFPQRQLEFHALTAMLEDAFGV
Ga0184620_1009459213300018051Groundwater SedimentVQQRDTVRLLVARVIEKPVSSYTSQAYYRLQVNKEPVVEGPDCGFPERQLEFRALTALLENAFGV
Ga0184611_123821523300018067Groundwater SedimentADTAEPRLLPMSLQRTQFQDRPAYAIKVDAAGRAMIMISGRTSEWHSLSVQQRDTVRLLVARVIEKPVAPCTSQADYRLHVDTEPAVEGPDCGFPQRQLEFHALTAMLEDAFGV
Ga0184609_1021660323300018076Groundwater SedimentGRAMIMISGRTSEWHSLSVQQRDTIRLLVARVIEKPVSPCTSQAYYQLQVGKEPAVDGPDCGFPQRQLEFRALTALLENAFGV
Ga0184639_1035801123300018082Groundwater SedimentDAAGRAMIMISGRTSEWHSLSVQQRDTVRLLVARVIEKPVAPCTSQADYRLHVDTEPAVEGPDCGFPQRQLEFHALTAMLEDAFGV
Ga0173481_1036735013300019356SoilGPTYTTEPQLFPMARQRIQLQDRPAYVIKIDAAGRAKIMISGQTSEWHSLSVQQRDTVRLLVARVIEEPVSPCTSQAYYRLQVDKEPAAEGPDCGFPERQLEFRALTALLENAFGV
Ga0193703_102721623300019876SoilMISGRTSEWHSLSVQQRDTVGLLVARVIEKPVSPCTSQAYYRLQVDKEPAVEGPDCGFPERQLEFRALTALLENAFGV
Ga0210381_1012954323300021078Groundwater SedimentDAAGRAMIMISGRTSEWHSLSVQQRDTIRLLVARVIEKPVSPCTSQAYYQLQVGKEPAVDGPDCGFPQRQLEFRALTALLENAFGV
Ga0193699_1030729123300021363SoilEPTPAFDEITGILAPALRGDFDGPTDTAETQLFPMSLQRIQLQDRPAYVIKIDAAGRAKIMISGQTSEWHSLSVQQRDTVRLLVARVIEEPVSPCTSQAYYRLQVDKEPAAEGPDCGFPERQLEFRALTALLENAFGV
Ga0222622_1011455943300022756Groundwater SedimentTISAAGRAMITIAGRRSESHDLSIQQRDTVRLLLARLIETPVVPCTAVAHYQLHIDTNNSGPKISNPDCGFPQRQPEFRALTVLLENAFGV
Ga0222622_1100267813300022756Groundwater SedimentYAIKVDAAGRAMIMISGRTSEWHSLSVQQRDTVRLLVARVIEKPVAPCTSQADYRLHVDTEPAVEGPDCGFPQRQLEFHALTAMLEDAFGV
Ga0247788_112389913300022901SoilHHLSIQQRDTVRLLLARLIETPVVPCTSTAHYQVHIDTGPNKSEPNNSGGPDCGFPQRQPEFRALTMLLENAFGV
Ga0207709_1014693313300025935Miscanthus RhizosphereAEPRLFPMSLQRIQLQDRPAYVIKIDAAGRAKIMISGRTSEWHSLSVQQRDTVRLLVARVIEKPVSPCTSQAYYRLQLHKEPAVEGPDCGFPERQLEFRALTALLENAFGV
Ga0207677_1098809623300026023Miscanthus RhizosphereQRIQLQDRPAYVIKIDAAGRAKIMISGRTSEWHSLSVQQRDTVRLLVARVIEKPVSPCTSQAYYRLQLHKEPAVEGPDCGFPERQLEFRALTALLENAFGV
Ga0207639_1033601313300026041Corn RhizosphereDRPAYVIKIDAAGRAKIMISGQTSEWHSLSVQQRDTVRLLVARVIEEPVSPCTSQAYYRLQVDKEPAAEGPDCGFPERQLEFRALTALLENAFGV
Ga0207678_1107843013300026067Corn RhizosphereGILAPALRGNFDGPADTAEPRLFPMSLQRIQLQDRPAYVIKIDAAGRAKIMISGRTSEWHSLSVQQRDTVRLLVARVIEKPVSPCTSQAYYRLQLHKEPAVEGPDCGFPERQLEFRALTALLENAFGV
Ga0247819_1031239123300028608SoilDGAGRAKIMISGRTSEWHSLSVQQRDTVRLLVARVIEKPVSPCTSQAYYRLQVDKEPAAEGPDCGFPERQLEFRALTALLEKAFGV
Ga0307321_107793913300028704SoilEWHSLSVQQRDTVRLLVARVIENPVSPCTSQAYYRLQVDKEPIVEGPDCGFPERQLEFRALTALLENAFGV
Ga0307291_103004033300028707SoilAYAIKVDAAGRAMIMISGRTSEWHSLSVQQRDTVRLLVARVIEKPVAPCTSQADYRLHVDTEPAVEGPDCGFPQRQLEFHALTAMLEDAFGV
Ga0307295_1001042343300028708SoilAPALRGDFDGPADTAEPRLFPMLLQRIQLQDRPAYVIKIDAGGRAKIMISGRTSEWHSLSVQQRDTVRLLVARVIENPVSPCTSQAYYRLQVDKEPVVEGPDCGFPERQPEFRALTALLENAFGV
Ga0307279_1007013313300028709SoilAMITIAGRRSESHDLSIQQRDTVRLLLARLIETPVVPCTAVAHYQLHIDTNNSGPKISNPDCGFPQRQPEFRALTVLLENAFGV
Ga0307322_1000752943300028710SoilRLLPMSLQRTEFQDRPAYAIKVDAAGRAMIMISGRTSEWHSLSVQQRDTVRLLVARVIEKPVAPCTSQADYRLHVDTEPAVEGPDCGFPQRQLEFHALTAMLEDAFGV
Ga0307285_1002820413300028712SoilPALRGDFDGPADTAEPRLFPMSLQRIQLQDRLAYVIKVDTAGRAKIMISGRTSEWHSLSVQQRDTVGLLVARVIEKPVSPCTSQAYYRLQVDKEPAVEGPDCGFPERQLEFRALTALLENAFGV
Ga0307298_1013773523300028717SoilDAAGRAKIMISGRTSEWHSLSVQQRDTVRLLVARVIENPVSPCTSQAYYRLQVDKEPIVEGPDCGFPERQPELRALTALLENAFGV
Ga0307301_1000526313300028719SoilGRALIMISGRTSEWHSLSVQQRDTVRLLVARVIEKPVAPCTSQADYRLHVDTEPAVEGPDCGFPQRQLEFHALTAMLEDAFGV
Ga0307301_1018636923300028719SoilGDFDGPADTAEPRLFPMSLQRIQLQDRLAYVIKVDTAGRAKIMISGRTSEWHSLSVQQRDTVRLLVARVIEKPVSPCTSQAYYRLQVDKEPAVEGPDCGFPERQLEFRALTALLENAFGV
Ga0307315_1015855723300028721SoilLSVQQRDTVRLLVARVIEKPVAPCTSQADYRLHVDTEPAVEGPDCGFPQRQLEFHALTAMLEDAFGV
Ga0307319_1003823323300028722SoilILAPALRGDFDGPADTAEPRLFPMSLQRIQLQDRLAYVIKVDTAGRAKIMISGRTSEWHSLSVQQRDTVGLLVARVIEKPVSPCTSQAYYRLQVDKEPAVEGPDCGFPERQLEFRALTALLENAFGV
Ga0307319_1014359713300028722SoilEPRLFPMSLQRILLQDRPAYTIKIDAAGRAMIMISGRTSEWHSLSVQQRDTIRLLVARVIEKPVSPCTSQAYYQLQVGKEPAVDGPDCGFPQRQLEFRALTALLESAFGV
Ga0307297_1007559313300028754SoilIMISGRTSEWHSLSVQQRDTVGLLVARVIEKPVSPCTSQAYYRLQVDKEPAVEGPDCGFPERQLEFRALTALLENAFGV
Ga0307297_1030070313300028754SoilAAGRAMIMISGRTSEWHSLSVQQRDTVRLLVARVIEKPVAPCTSQADYRLHVDTEPAVEGPDCGFPQRQLEFHALTAMLEDAFGV
Ga0307316_1000151713300028755SoilGRTSEWHSLSVQQRDTVRLLVARVIEKPVAPCTSQADYRLHVDTEPAVEGPDCGFPQRQLEFHALTAMLEDAFGV
Ga0307316_1017638913300028755SoilQDRPAYAIKVDAAGRAMIMISGRTSEWHSLSVQQRDTVRLLVARVIEKPVAPCTSQADYRLHVDTEPAVEGPDCGFPQRQLEFHALTAMLEDAFGV
Ga0307288_1036947723300028778SoilTSLQRIQLQDRPAYVIKIDAAGRAKIMISGQTSEWHSLSVQQRDTVRLLVARVIEEPVSPCTSQAYYRLQVDKEPAAEGPDCGFPERQLEFRALTALLENAFGV
Ga0307323_1027550923300028787SoilSMQRTQFQDRPAYAIKVDAAGRAMIMISGRTSEWHSLSVQQRDTVRLLVARVIEKPVAPCTSQADYRLHVDTEPAVEGPDCGFPQRQLEFHALTAMLEDAFGV
Ga0307290_1019850323300028791SoilLPMSLQRTQFQDRPAYAIKVDAAGRAMIMISGRTSEWHSLSVQQRDTVRLLVARVIEKPVAPCTSQADYRLHVDTEPAVEGPDCGFPQRQLEFHALTAMLEDAFGV
Ga0307287_1021695923300028796SoilAFDEITSMVAPALRGNFDGPADTAEPRLLPMSLQRTQFQDRPAYAIKVDAAGRAMIMISGRTSEWHSLSVQQRDTVRLLVARVIEKPVAPCTSQADYRLHVDTEPAVEGPDCGFPQRQLEFHALTAMLEDAFGV
Ga0307305_1000165373300028807SoilMITIAGRRSESHDLSIQQRDTVRLLLARLIETPVVPCTAVAHYQLHIDTNNSGPKISNPDCGFPQRQPEFRALTVLLENAFGV
Ga0307294_1022346413300028810SoilMIMISGRTSEWHSLSVQQRDTVRLLVARVIEKPVAPCTSQADYRLHVDTEPAVEGPDCGFPQRQLEFHALTAMLEDAFGV
Ga0307294_1031579523300028810SoilPLSVQQRDTVRLLVARVIENPVSPCTSQAYYRLQVDKEPVVEGPDCGFPERQPEFRALTALLENAFGV
Ga0307292_1043338523300028811SoilLQRIQLQDRPAYVIKIDAAGRVKIMISGRTSEWHPLSVQQRDTVRLLVARVIENPVSPCTSQAYYRLQVDKEPVVEGPDCGFPERQPEFRALTALLENAFGV
Ga0307296_1042730713300028819SoilDRPAYVIKIDAAGRVKIMISGRTSEWHPLSVQQRDTVRLLVARVIENPVSPCTSQAYYRLQVDKEPVVEGPDCGFPERQPEFRALTALLENAFGV
Ga0307296_1059565513300028819SoilAGRAKIMISGRTSEWHSLSVQQRDTVRLLVARVIEKPVSPCTSQAYYRLQVDKEPAAEGPDCGFPERQLEFRALTALLEQAFGV
Ga0307310_1004733443300028824SoilSEWHSLSVQQRDTVRLLVARVIENPVSPCTSQAYYRLQVDKEPIVEGPDCGFPEQQPEFRALTALLENAFGV
Ga0307312_1000239713300028828SoilRLFPMLLERIQLQDRPAYVIKIDAAGRAKIMISGRTSEWHSLSVQQRDTVRLLVARVIENPVSPCTSQAYYRLQVDKEPVVEGPDCGFPERQPEFRALTALLENAFGV
Ga0307312_1084446113300028828SoilLAYVIKVDTAGRAKIMISGRTSEWHSLSVQQRDTVGLLVARVIEKPVSPCTSQAYYRLQVDKEPAVEGPDCGFPERQLEFRALTALLENAFGV
Ga0307289_1017403523300028875SoilAGRAKIMISGRTSEWHSLSVQQRDTVGLLVARVIEKPVSPCTSQAYYRLQVDKEPAVEGPDCGFPERQLEFRALTALLENAFGV
Ga0307286_1000050013300028876SoilPRLLPMSLQRTQFQDRPAYAIKVDAAGRAMIMISGRTSEWHSLSVQQRDTVRLLVARVIEKPVAPCTSQADYRLHVDTEPAVEGPDCGFPQRQLEFHALTAMLEDAFGV
Ga0307286_1012918523300028876SoilDAAGRAKIMISGRTSEWHSLSVQQRDTVRLLVARVIEKPVSSCTSQAYYRLQVDKEPVVEGPDCGFPERQLEFRALTALLENAFGV
Ga0307286_1033888023300028876SoilGGSKQRDLSVQQRDTLRLLIARIIEEPVVPCTSTVHYRLDVATEPAISGPDCGFRERQPEFGALTVLLEDAFDL
Ga0307300_1021251713300028880SoilGRAMITIAGRTPEVHDLSIQQRDTVRLLLARLVETPVVSCTSPVHYQLQIDTGPNIPGPKSPGPEISGPDCGFPQRQPEFHALTVLLENAFGV
Ga0307308_1011770313300028884SoilEWHPLSVQQRDTVRLLVARVIENPVSPCTSQAYYRLQVDKEPVVEGPDCGFPERQPEFRALTALLENAFGV
Ga0307304_1049795713300028885SoilAMIMISGRTSEWHSLSVQQRDTVRLLVARVIEKPVAPCTSQADYRLHVDTEPAVEGPDCGFPQRQLEFHALTAMLEDAFGV
Ga0308201_1017988713300031091SoilTGILAPALRGDFDGPADTAEPRLFPMLLQRIQLQDRPAYVIKIDAAGRVKIMISGRTSEWHPLSVQQRDTVRLLVARVIENPVSPCTSQAYYRLQVDKEPVVEGPDCGFPERQLEFRALTALLEQAFGV
Ga0308197_1028108023300031093SoilTSEWHSLSVQQRDTVGLLVARVIENPVSPCTSQAYYRLQVDKEPAVEGPDCGFPERQLEFRALTALLENAFGV
Ga0308187_1021534613300031114SoilLQDRLAYVIKVDTAGRAKIMISGRTSEWHSLSVQQRDTVGLLVARVIENPVSPCTSQAYYRLQVDKEPAVEGPDCGFPERQLEFRALTALLENAFGV
Ga0307408_10214985913300031548RhizosphereELSIQQRDTVRLLLARVIEKPVVPCTTTAHYRLHVDKEPPVSGPDCGFPQRQLEFRALTVLLETAFGV
Ga0307412_1157960913300031911RhizosphereRKSELHDLSVQQRDTVRLLLARLVDTPVVPCTSTVRYWLHIDPESPGSGPKISGPDCGFPQRQPEFHALTTLLENAFGV
Ga0268251_1059688723300032159AgaveIQQRDTVRLLLARLLETPVVPCTSTVRYRLQIDPEPPDFGPKISGPDCGFPQRQPEFRALTTLLENAFGV

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.