NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F105168

Metagenome / Metatranscriptome Family F105168

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105168
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 62 residues
Representative Sequence MEVIKQIFGDKMSDYKIVDIILKIWVAGLLSMVVLGLVAVISHIIMNPSAVDNATFGVFDTLGS
Number of Associated Samples 87
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 91.00 %
% of genes near scaffold ends (potentially truncated) 16.00 %
% of genes from short scaffolds (< 2000 bps) 73.00 %
Associated GOLD sequencing projects 81
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (50.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine
(17.000 % of family members)
Environment Ontology (ENVO) Unclassified
(67.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(95.000 % of family members)


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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 76.56%    β-sheet: 0.00%    Coil/Unstructured: 23.44%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF13450NAD_binding_8 1.00
PF12705PDDEXK_1 1.00
PF04321RmlD_sub_bind 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG0451Nucleoside-diphosphate-sugar epimeraseCell wall/membrane/envelope biogenesis [M] 2.00
COG0702Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domainsGeneral function prediction only [R] 2.00
COG1086NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsCCell wall/membrane/envelope biogenesis [M] 2.00
COG1087UDP-glucose 4-epimeraseCell wall/membrane/envelope biogenesis [M] 1.00
COG1088dTDP-D-glucose 4,6-dehydrataseCell wall/membrane/envelope biogenesis [M] 1.00
COG1089GDP-D-mannose dehydrataseCell wall/membrane/envelope biogenesis [M] 1.00
COG1090NAD dependent epimerase/dehydratase family enzymeGeneral function prediction only [R] 1.00
COG1091dTDP-4-dehydrorhamnose reductaseCell wall/membrane/envelope biogenesis [M] 1.00

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms50.00 %
UnclassifiedrootN/A50.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000101|DelMOSum2010_c10011805Not Available5558Open in IMG/M
3300000101|DelMOSum2010_c10092748All Organisms → Viruses → Predicted Viral1286Open in IMG/M
3300000117|DelMOWin2010_c10140649Not Available811Open in IMG/M
3300000137|LP_F_10_SI03_10DRAFT_c1011743All Organisms → Viruses → Predicted Viral1743Open in IMG/M
3300000192|SI60aug11_100mDRAFT_c1062407Not Available572Open in IMG/M
3300000224|SI34jun09_10mDRAFT_1011482All Organisms → Viruses → Predicted Viral1735Open in IMG/M
3300000929|NpDRAFT_10156571Not Available698Open in IMG/M
3300001344|JGI20152J14361_10061489Not Available911Open in IMG/M
3300001346|JGI20151J14362_10017281All Organisms → Viruses → Predicted Viral3949Open in IMG/M
3300001349|JGI20160J14292_10038474All Organisms → Viruses → Predicted Viral2328Open in IMG/M
3300001355|JGI20158J14315_10018721All Organisms → Viruses → Predicted Viral3588Open in IMG/M
3300001472|JGI24004J15324_10008980All Organisms → Viruses → Predicted Viral3674Open in IMG/M
3300003216|JGI26079J46598_1050689Not Available843Open in IMG/M
3300003271|JGI26114J46594_1031044Not Available836Open in IMG/M
3300003427|JGI26084J50262_1042809Not Available1131Open in IMG/M
3300003478|JGI26238J51125_1018292All Organisms → Viruses → Predicted Viral1732Open in IMG/M
3300003620|JGI26273J51734_10016185All Organisms → Viruses → Predicted Viral2959Open in IMG/M
3300004097|Ga0055584_100748736All Organisms → Viruses → Predicted Viral1022Open in IMG/M
3300004279|Ga0066605_10313969Not Available574Open in IMG/M
3300005239|Ga0073579_1190341Not Available20842Open in IMG/M
3300006027|Ga0075462_10012656All Organisms → Viruses → Predicted Viral2722Open in IMG/M
3300006484|Ga0070744_10097009Not Available853Open in IMG/M
3300006752|Ga0098048_1009673All Organisms → Viruses → Predicted Viral3457Open in IMG/M
3300006789|Ga0098054_1012333All Organisms → Viruses → Predicted Viral3503Open in IMG/M
3300007552|Ga0102818_1067153Not Available706Open in IMG/M
3300007647|Ga0102855_1031350All Organisms → Viruses → Predicted Viral1459Open in IMG/M
3300007862|Ga0105737_1005424All Organisms → Viruses → Predicted Viral2790Open in IMG/M
3300007862|Ga0105737_1074395Not Available841Open in IMG/M
3300007863|Ga0105744_1015175All Organisms → Viruses → Predicted Viral1969Open in IMG/M
3300007972|Ga0105745_1045633All Organisms → Viruses → Predicted Viral1190Open in IMG/M
3300008961|Ga0102887_1220708Not Available576Open in IMG/M
3300009000|Ga0102960_1248077Not Available631Open in IMG/M
3300009002|Ga0102810_1179787Not Available650Open in IMG/M
3300009056|Ga0102860_1214987Not Available552Open in IMG/M
3300009058|Ga0102854_1057302Not Available1117Open in IMG/M
3300009071|Ga0115566_10229919All Organisms → Viruses → Predicted Viral1119Open in IMG/M
3300009071|Ga0115566_10310747Not Available927Open in IMG/M
3300009077|Ga0115552_1291981Not Available652Open in IMG/M
3300009077|Ga0115552_1309749Not Available630Open in IMG/M
3300009193|Ga0115551_1273646Not Available742Open in IMG/M
3300009433|Ga0115545_1042139All Organisms → Viruses → Predicted Viral1787Open in IMG/M
3300009436|Ga0115008_10228477All Organisms → Viruses → Predicted Viral1328Open in IMG/M
3300009438|Ga0115559_1052079All Organisms → Viruses → Predicted Viral1756Open in IMG/M
3300009440|Ga0115561_1111473All Organisms → Viruses → Predicted Viral1110Open in IMG/M
3300009440|Ga0115561_1138091Not Available966Open in IMG/M
3300009445|Ga0115553_1399057Not Available523Open in IMG/M
3300009447|Ga0115560_1217476Not Available738Open in IMG/M
3300009449|Ga0115558_1114046All Organisms → Viruses → Predicted Viral1170Open in IMG/M
3300009498|Ga0115568_10153007All Organisms → Viruses → Predicted Viral1096Open in IMG/M
3300009505|Ga0115564_10446467Not Available628Open in IMG/M
3300009543|Ga0115099_10747122Not Available686Open in IMG/M
3300009677|Ga0115104_11043027Not Available874Open in IMG/M
3300012525|Ga0129353_1223905Not Available520Open in IMG/M
3300017706|Ga0181377_1025783All Organisms → Viruses → Predicted Viral1251Open in IMG/M
3300017706|Ga0181377_1029358All Organisms → Viruses → Predicted Viral1146Open in IMG/M
3300017714|Ga0181412_1085600Not Available754Open in IMG/M
3300017729|Ga0181396_1009522All Organisms → Viruses → Predicted Viral1953Open in IMG/M
3300017755|Ga0181411_1104615Not Available834Open in IMG/M
3300020165|Ga0206125_10003134Not Available16408Open in IMG/M
3300020165|Ga0206125_10043598All Organisms → Viruses → Predicted Viral2257Open in IMG/M
3300020165|Ga0206125_10058120All Organisms → Viruses → Predicted Viral1825Open in IMG/M
3300020166|Ga0206128_1026453All Organisms → Viruses → Predicted Viral3167Open in IMG/M
3300020175|Ga0206124_10060359All Organisms → Viruses → Predicted Viral1638Open in IMG/M
3300020185|Ga0206131_10032156All Organisms → Viruses → Predicted Viral3919Open in IMG/M
3300020352|Ga0211505_1035536Not Available1249Open in IMG/M
3300020352|Ga0211505_1070746Not Available842Open in IMG/M
3300020438|Ga0211576_10284123Not Available863Open in IMG/M
3300021085|Ga0206677_10017609All Organisms → Viruses → Predicted Viral4459Open in IMG/M
3300021085|Ga0206677_10020993All Organisms → Viruses → Predicted Viral3936Open in IMG/M
3300021085|Ga0206677_10022648Not Available3734Open in IMG/M
3300021085|Ga0206677_10023097All Organisms → Viruses → Predicted Viral3682Open in IMG/M
3300021364|Ga0213859_10000206Not Available27661Open in IMG/M
3300021375|Ga0213869_10037630All Organisms → Viruses → Predicted Viral2591Open in IMG/M
3300021958|Ga0222718_10538103Not Available558Open in IMG/M
(restricted) 3300022931|Ga0233433_10400457Not Available539Open in IMG/M
3300023698|Ga0228682_1021276Not Available864Open in IMG/M
3300023699|Ga0228695_1014460Not Available1091Open in IMG/M
(restricted) 3300024255|Ga0233438_10037977All Organisms → Viruses → Predicted Viral2591Open in IMG/M
(restricted) 3300024259|Ga0233437_1156058All Organisms → Viruses → Predicted Viral1031Open in IMG/M
(restricted) 3300024261|Ga0233439_10197932Not Available922Open in IMG/M
3300024294|Ga0228664_1031198All Organisms → Viruses → Predicted Viral1417Open in IMG/M
3300024335|Ga0228672_1148346Not Available610Open in IMG/M
3300024343|Ga0244777_10233788All Organisms → Viruses → Predicted Viral1173Open in IMG/M
3300024346|Ga0244775_10086986All Organisms → Viruses → Predicted Viral2665Open in IMG/M
3300024346|Ga0244775_10102679All Organisms → Viruses → Predicted Viral2430Open in IMG/M
3300024348|Ga0244776_10290642All Organisms → Viruses → Predicted Viral1120Open in IMG/M
3300024415|Ga0228662_1037710Not Available1280Open in IMG/M
3300025083|Ga0208791_1022275All Organisms → Viruses → Predicted Viral1274Open in IMG/M
3300025137|Ga0209336_10004653All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage6158Open in IMG/M
3300025666|Ga0209601_1142469Not Available675Open in IMG/M
3300025690|Ga0209505_1010562All Organisms → Viruses → Predicted Viral4036Open in IMG/M
3300025701|Ga0209771_1009201All Organisms → Viruses → Predicted Viral4721Open in IMG/M
3300025759|Ga0208899_1105867Not Available1040Open in IMG/M
3300025822|Ga0209714_1132344Not Available654Open in IMG/M
3300025894|Ga0209335_10083634All Organisms → Viruses → Predicted Viral1738Open in IMG/M
3300026460|Ga0247604_1054172Not Available962Open in IMG/M
3300026466|Ga0247598_1141810Not Available579Open in IMG/M
3300026479|Ga0228622_1019098All Organisms → Viruses → Predicted Viral1956Open in IMG/M
3300026511|Ga0233395_1099557Not Available750Open in IMG/M
3300027833|Ga0209092_10185375All Organisms → Viruses → Predicted Viral1179Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine17.00%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater11.00%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine9.00%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine8.00%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine8.00%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine6.00%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater6.00%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine6.00%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater4.00%
Estuary WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water4.00%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater4.00%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous3.00%
EstuarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine3.00%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine3.00%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater3.00%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine1.00%
MarineEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Marine1.00%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water1.00%
Freshwater And MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine1.00%
Pond WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water1.00%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000101Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010EnvironmentalOpen in IMG/M
3300000117Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010EnvironmentalOpen in IMG/M
3300000137Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample F_10_SI03_10EnvironmentalOpen in IMG/M
3300000192Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 60 08/10/11 100mEnvironmentalOpen in IMG/M
3300000224Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 34 06/16/09 10mEnvironmentalOpen in IMG/M
3300000929Marine plume microbial communities from the Columbia River - 15 PSUEnvironmentalOpen in IMG/M
3300001344Pelagic Microbial community sample from North Sea - COGITO 998_met_02EnvironmentalOpen in IMG/M
3300001346Pelagic Microbial community sample from North Sea - COGITO 998_met_01EnvironmentalOpen in IMG/M
3300001349Pelagic Microbial community sample from North Sea - COGITO 998_met_10EnvironmentalOpen in IMG/M
3300001355Pelagic Microbial community sample from North Sea - COGITO 998_met_08EnvironmentalOpen in IMG/M
3300001472Marine viral communities from the Pacific Ocean - LP-32EnvironmentalOpen in IMG/M
3300003216Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_59LU_5_DNAEnvironmentalOpen in IMG/M
3300003271Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_18_M0_10EnvironmentalOpen in IMG/M
3300003427Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_116LU_22_DNAEnvironmentalOpen in IMG/M
3300003478Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_100m_DNAEnvironmentalOpen in IMG/M
3300003620Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_125m_DNAEnvironmentalOpen in IMG/M
3300004097Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaGEnvironmentalOpen in IMG/M
3300004279Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_10mEnvironmentalOpen in IMG/M
3300005239Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of MaineEnvironmentalOpen in IMG/M
3300006027Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNAEnvironmentalOpen in IMG/M
3300006484Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535EnvironmentalOpen in IMG/M
3300006752Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaGEnvironmentalOpen in IMG/M
3300006789Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaGEnvironmentalOpen in IMG/M
3300007552Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.571EnvironmentalOpen in IMG/M
3300007647Estuarine microbial communities from the Columbia River estuary - metaG 1370B-02EnvironmentalOpen in IMG/M
3300007862Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1373A_0.2umEnvironmentalOpen in IMG/M
3300007863Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1459B_0.2umEnvironmentalOpen in IMG/M
3300007972Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460ABC_3.0umEnvironmentalOpen in IMG/M
3300008961Estuarine microbial communities from the Columbia River estuary - metaG 1550B-02EnvironmentalOpen in IMG/M
3300009000Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_B_H2O_MGEnvironmentalOpen in IMG/M
3300009002Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.573EnvironmentalOpen in IMG/M
3300009056Estuarine microbial communities from the Columbia River estuary - metaG 1449A-3EnvironmentalOpen in IMG/M
3300009058Estuarine microbial communities from the Columbia River estuary - metaG 1370A-02EnvironmentalOpen in IMG/M
3300009071Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405EnvironmentalOpen in IMG/M
3300009077Pelagic marine microbial communities from North Sea - COGITO_mtgs_110328EnvironmentalOpen in IMG/M
3300009193Pelagic marine microbial communities from North Sea - COGITO_mtgs_110321EnvironmentalOpen in IMG/M
3300009433Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330EnvironmentalOpen in IMG/M
3300009436Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M MetagenomeEnvironmentalOpen in IMG/M
3300009438Pelagic marine microbial communities from North Sea - COGITO_mtgs_110506EnvironmentalOpen in IMG/M
3300009440Pelagic marine microbial communities from North Sea - COGITO_mtgs_110512EnvironmentalOpen in IMG/M
3300009445Pelagic marine microbial communities from North Sea - COGITO_mtgs_110331EnvironmentalOpen in IMG/M
3300009447Pelagic marine microbial communities from North Sea - COGITO_mtgs_110509EnvironmentalOpen in IMG/M
3300009449Pelagic marine microbial communities from North Sea - COGITO_mtgs_110426EnvironmentalOpen in IMG/M
3300009498Pelagic marine microbial communities from North Sea - COGITO_mtgs_120426EnvironmentalOpen in IMG/M
3300009505Pelagic marine microbial communities from North Sea - COGITO_mtgs_110523EnvironmentalOpen in IMG/M
3300009543Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_20Mar14_M2_3um Metatranscriptome (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300009677Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - CN13ID_70_C50_10m_0.8um Metatranscriptome (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012525Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_RNA2 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300017706Marine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaGEnvironmentalOpen in IMG/M
3300017714Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 35 SPOT_SRF_2012-08-15EnvironmentalOpen in IMG/M
3300017729Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 19 SPOT_SRF_2011-01-11EnvironmentalOpen in IMG/M
3300017755Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 34 SPOT_SRF_2012-07-09EnvironmentalOpen in IMG/M
3300020165Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1EnvironmentalOpen in IMG/M
3300020166Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1EnvironmentalOpen in IMG/M
3300020175Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160321_2EnvironmentalOpen in IMG/M
3300020185Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1EnvironmentalOpen in IMG/M
3300020352Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556084-ERR599144)EnvironmentalOpen in IMG/M
3300020438Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)EnvironmentalOpen in IMG/M
3300021085Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015EnvironmentalOpen in IMG/M
3300021364Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304EnvironmentalOpen in IMG/M
3300021375Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132EnvironmentalOpen in IMG/M
3300021958Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27DEnvironmentalOpen in IMG/M
3300022931 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_100_MGEnvironmentalOpen in IMG/M
3300023698Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 27R (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300023699Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 81R (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024255 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_10_MGEnvironmentalOpen in IMG/M
3300024259 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_200_MGEnvironmentalOpen in IMG/M
3300024261 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_100_MGEnvironmentalOpen in IMG/M
3300024294Seawater microbial communities from Monterey Bay, California, United States - 78DEnvironmentalOpen in IMG/M
3300024335Seawater microbial communities from Monterey Bay, California, United States - 90DEnvironmentalOpen in IMG/M
3300024343Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fractionEnvironmentalOpen in IMG/M
3300024346Whole water sample coassemblyEnvironmentalOpen in IMG/M
33000243480.2um to 3um size fraction coassemblyEnvironmentalOpen in IMG/M
3300024415Seawater microbial communities from Monterey Bay, California, United States - 76DEnvironmentalOpen in IMG/M
3300025083Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025137Marine viral communities from the Pacific Ocean - LP-32 (SPAdes)EnvironmentalOpen in IMG/M
3300025666Pelagic marine microbial communities from North Sea - COGITO_mtgs_110426 (SPAdes)EnvironmentalOpen in IMG/M
3300025690Pelagic marine microbial communities from North Sea - COGITO_mtgs_110331 (SPAdes)EnvironmentalOpen in IMG/M
3300025701Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_59LU_5_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025759Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)EnvironmentalOpen in IMG/M
3300025822Pelagic marine microbial communities from North Sea - COGITO_mtgs_110414 (SPAdes)EnvironmentalOpen in IMG/M
3300025894Pelagic Microbial community sample from North Sea - COGITO 998_met_09 (SPAdes)EnvironmentalOpen in IMG/M
3300026460Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 85R (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300026466Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 70R (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300026479Seawater microbial communities from Monterey Bay, California, United States - 26DEnvironmentalOpen in IMG/M
3300026511Seawater microbial communities from Monterey Bay, California, United States - 27DEnvironmentalOpen in IMG/M
3300027833Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2010_1001180563300000101MarineMLKQIFTEKMSDYKIVDIILKIWVAGLLSMAVLGLIGVITHIIMNPSAIDNATFGVFDTLGN*
DelMOSum2010_1009274813300000101MarineMEVIKQIFGDKMSDYKIVDIILKVWVAGLLSMVVLGLVAVISHIIMNPSAVDNATFGVFDTLGS*
DelMOWin2010_1014064933300000117MarineMEVIKQIFGDKMSDYKVVDIILKIWVAGLLSMVVLGLVAVISHIIMNPSAVDNATFGVFDTLGS*
LP_F_10_SI03_10DRAFT_101174343300000137MarineMEVIKQIFXDKMSDYXIVDIXLKXWVAGLLSMVVLGLVAVISHIIMNPSSVDNATFGIFDTLGS*
SI60aug11_100mDRAFT_106240713300000192MarineDYKIVDIILKVWVAGLLSMVVLGLVAVISHIIMNPSSVDNATFGIFDTLGS*
SI34jun09_10mDRAFT_101148243300000224MarineMINXVIKQIFTEKMSDYXIVDIIXKIWVAGLLSMAVLGLIGVITHIIMNPSAIDNATFGVFDTLGN*
NpDRAFT_1015657123300000929Freshwater And MarineMLKQIFTEKMSDYKIVDIILKIWVAGLLSMVVLGLVAVISHIIMNPSSVDNATFGIFDTLGS*
JGI20152J14361_1006148943300001344Pelagic MarineMSDYKIVDIILKIWVAGLLSMVVLGLVAVISHIIMNPSSIDNATFGVFDTLG
JGI20151J14362_1001728163300001346Pelagic MarineLYNVNNWRIKKNMNVLLEIWKDKLSDYVIMDYILKIWVTGLLVMVVLGLGAIISHIIMNPSAIDNATFGVFDTLGS*
JGI20160J14292_1003847453300001349Pelagic MarineMSDYKIVDIILKVWVAGLLSMVVLGLVAVISHIIMNPSAVDNATFGIFDTLGS*
JGI20158J14315_1001872143300001355Pelagic MarineMSDYKIVDIILKVWVAGLLSMVVLGLVAVISHIIMNPSAVDNATFGIFDTLGN*
JGI24004J15324_1000898063300001472MarineMEVIKEIFADKMSDYKVVDIVLKIWVAGLLSMVVLGLVAVISHIIMNPSSVDNATFGVFDTLGY*
JGI26079J46598_105068923300003216MarineMEVIKQIFTEKMSDYKIVDIILKIWVAGLLSMAVLGLIGVITHIIMNPSAIDNATFGVFDTLGN*
JGI26114J46594_103104423300003271MarineMLKEIFTEKMSDYKIVDIILKIWVAGLLSMAVLGLIGVITHIIMNPSAIDNATFGVFDTLGN*
JGI26084J50262_104280933300003427MarineMETLKMIFTEKTSDYKIVDVILKAWISGLLVLWVIGMVAIISHIIMNPSAVDNATFGIFDTLGN*
JGI26238J51125_101829233300003478MarineMEVIKQIFTEKMSDYKIVDIILKVWVAGLLSMVVLGLVAVISHIIMNPSSVDNATFGIFDTLGS*
JGI26273J51734_1001618533300003620MarineMSDYKIVDIILKIWVAGLLSMAVLGLIGVITHIIMNPSAIDNATFGVFDTLGN*
Ga0055584_10074873613300004097Pelagic MarineMSDYKIVDIILKIWVAGLLSMVVLGLVAVISHIIMNPSSIDNATFGVFDTLGS*
Ga0066605_1031396913300004279MarineMEVIKQIFTDKMSDYKIVDIILKVWVAGLLSMVVLGLVAVISHIIMNPSSVDNATFGIFDTLGS*
Ga0073579_1190341273300005239MarineMSDYKVVDIILKIWVAGLLSMVVLGLVAVISHIIMNPSAVDNATFGVFDTLGS*
Ga0075462_1001265623300006027AqueousMNVLLEIWKDKLSDYVIMDYILKIWVTVLLVMVVLGLGAIISHIIMNPSAIDNATFGIFDTLGS*
Ga0070744_1009700933300006484EstuarineMEVIKQIFGDKMSDYKIVDIILKVWVAGLLSMVVLGLVAVISHIIMNPSSVDNATFGVFDTLGS*
Ga0098048_100967353300006752MarineMEVIKQIFGDKMSDYKVVDIMLKIWVAGLLSMVVLGLIAVISHIIINPSSIDNATFGVFDTLGS*
Ga0098054_101233353300006789MarineMEVIKQIFGDKMSDYKVVDIILKIWVAGLLSMVVLGLIAVISHIIINPSSIDNATFGVFDTLGS*
Ga0102818_106715333300007552EstuarineMLKQIFTEKMSDYKIVDIILKIWVAGLLSMAVLGLIGVITHIIMNPSAVDNATFGVFDTLGN*
Ga0102855_103135033300007647EstuarineMEVIKQIFGDKMSDYKIVDIILKVWVAGLLSMVVLGLVAVISHIIINPSSIDNATFGVFDTLGS*
Ga0105737_100542413300007862Estuary WaterKQIFGDKMSDYKIVDIILKVWVAGLLSMVVLGLVAVISHIIINPSSIDNATFGVFDTLGS
Ga0105737_107439523300007862Estuary WaterMEVIKQIFGDKMSDYKIVDIMLKIWVAGLLSMVVLGLVAVISHIIMNPSSVDNATFGVFDTLGS*
Ga0105744_101517523300007863Estuary WaterMEVIKQIFGDKMSDYKIVDIILKVWVAGLLSMAVLGLIGVITHIIMNPSSVDNATFGVFDTLGS*
Ga0105745_104563333300007972Estuary WaterMEVIKQIFGDKMSDYKIVDIILKVWVAGLLSMVVLGLVAVISHIIMNPSSVDNATFGIFDTLGS*
Ga0102887_122070813300008961EstuarineMEVIKQIFTEKMSDYKIVDIILKIWVAGLLSMAVLGLIGVITHIIMNPSAIDNATFGVFDTLG
Ga0102960_124807733300009000Pond WaterMETLKMIFTEKTSDYKIIDIILKVWIAGLLTMWAIGMVAIISHIIMNPSAVDNATFGIFDTLGN*
Ga0102810_117978733300009002EstuarineMEVIKQIFGDKMSDYKIVDIILKVWVAGLLSMVVLGLVAVISHIIINPSSID
Ga0102860_121498733300009056EstuarineMEVIKQIFGDKMSDYKIVDIILKVWVAGLLSMAVLGLIGVITHIIMNPSAVDNATFGVFDTLGN*
Ga0102854_105730213300009058EstuarineMEVIKQIFGDKMSDYKVVDIMLKIWVAGLLSMVVLGLVAVISHIIMNPSSVDNATFGVFDTLGS*
Ga0115566_1022991923300009071Pelagic MarineMEVIKQIFGDKMSDYKIVDIILKIWVAGLLSMVVLGLVAVISHIIMNPSSIDNATFGVFDTLGS*
Ga0115566_1031074723300009071Pelagic MarineMEVIKQIFVEKISDYKIVDIILKIWVAGLLSMVVLGLIGVISHIIMNPSAVDNATFGIFDTLGN*
Ga0115552_129198123300009077Pelagic MarineMEVIKQIFVEKISDYKIVDIILKIWIAGLLSMVVLGLIGVISHIIMNPSAVDNATFGIFDTLGN*
Ga0115552_130974933300009077Pelagic MarineMEVIKQIFGDKMSDYKIVDIILKVWVAGLLSMVVLGLVAVISHIIMNPSAVDNATFGIFDTLGS*
Ga0115551_127364623300009193Pelagic MarineMEVIKQIFVEKISDYKIVDIILKIWIAGLLSMVVLGLIGVISHIIMNPSAVDNATFGIFDTLGH*
Ga0115545_104213943300009433Pelagic MarineMNVLLEIWKDKLSDYVIMDYILKIWVTGLLVMVVLGLGAIISHIIMNPSAIDNATFGVFDTLGS*
Ga0115008_1022847723300009436MarineMEVIKQIFVEKISDYKIVDIILKIWVAGLLSMVVLGLIGVITHIIMNPSAVDNATFGIFDTLGN*
Ga0115559_105207943300009438Pelagic MarineMEVIKQIFGDKMSDYKIVDIILKVWVAGLLSMVVLGLVAVISHIIMNPSAVDNATFGIFDTLGN*
Ga0115561_111147333300009440Pelagic MarineMEVIKQIFVEKISDYKIVDIILKIWVAGLLSMVVLGLVAVISHIIMNPSAVDNATFGIFDTLGS*
Ga0115561_113809143300009440Pelagic MarineMEVIKQIFGDKMSDYKIVDIILRVWVAGLLSMVVLGLVAVISHIIMNPSAVDNATFGVFDTLGS*
Ga0115553_139905723300009445Pelagic MarineMEVIKQIFGDKMSDYKIVDIILKIWVAGLLSMVVLGLVAVISHIIMNPSAVDNATFGIFDTLGS*
Ga0115560_121747633300009447Pelagic MarineMEVIKQIFGDKMSDYKIVDIILKVWVAGLLSMVVLGLVAVISHLIMNPSAVDNATFGIFDTLGS*
Ga0115558_111404623300009449Pelagic MarineMEVIKQIFGDKMSDYKIVDIILKVWVAGLLSMVVLGLVAVISHIIMNPSSIDNATFGVFDTLGS*
Ga0115568_1015300723300009498Pelagic MarineMEVIKQIFGDKMSDYKIVDIILKIWVAGLLSMVVLGLVAVISHIIMNPSAVDNATFGVFDTLGS*
Ga0115564_1044646713300009505Pelagic MarineMSDYKIVDIILKIWVAGLLSMVVLGLVAVISHIIMNPSAVDNATFGIFDTLGN*
Ga0115099_1074712223300009543MarineMEVIKQIFGDKMSDYKIVDIILKVWVAGLLSMVVLGLVAVISHIIMNPSSIDNATFGVFDTLGN*
Ga0115104_1104302733300009677MarineMEVIKQIFGDKMSDYKIVDIILKVWVAGLLSMVVLGLVAVISHIIMNPSSIDNATFCVFDTLGN*
Ga0129353_122390523300012525AqueousMIFTEKASDYKIVDVILKAWISGLLVLWVIGMVAIISHIITNPSAIDNATFGVFDTLGN*
Ga0181377_102578343300017706MarineMEVIKQIFGDKMSDYKVVDIMLKIWVAGLLSMVVLGLVAVISHIIMNPSAVDNATFGVFDTLGS
Ga0181377_102935833300017706MarineIFVDKMSDYKIVDIVLKIWVAGLLSMFVIGMFAIISHIIMNPEAVDNATFGVFDTLGY
Ga0181412_108560013300017714SeawaterMLKEIFTEKMSDYKIVDIILKIWVAGLLSMAVLGLIGVITHIIMNPSAIDNATFGVFDTLGS
Ga0181396_100952253300017729SeawaterMLKEIFTEKMSDYKIVDIILKIWVAGLLSMAVLGLSGVITHIIMNPSAIDNATFGVFDTI
Ga0181411_110461513300017755SeawaterSDYKIVDIILKVWVAGLLSMVVLGLVAVISHIIMNPSSVDNATFGVFDTLGS
Ga0206125_1000313423300020165SeawaterMNVLLEIWKDKLSDYVIMDYILKIWVTGLLVMVVLGLGAIISHIIMNPSAIDNATFGIFDTLGS
Ga0206125_1004359833300020165SeawaterMEVMKQIFVEKISDYKIVDIILKIWVAGLLSMVVLGLVAVISHIIMNPSAVDNATFGIFDTLGS
Ga0206125_1005812023300020165SeawaterMEVIKQIFGDKMSDYKIVDIILKIWVAGLLSMVVLGLVAVISHIIMNPSSIDNATFGVFDTLGS
Ga0206128_102645353300020166SeawaterMEVIKQIFGDKMSDYKIVDIILKIWVAGLLSMVVLGLVAVISHIIMNPSSIDNATFGVFDTLGN
Ga0206124_1006035943300020175SeawaterMNVLLEIWKDKLSDYVIMDYILKIWVTGLLVMVVLGLGAIISHIIMNPSAIDNATFGVFDTLGS
Ga0206131_1003215653300020185SeawaterMEVIKQIFGDKMSDYKIVDIILKVWVAGLLSMVVLGLVAVISHIIMNPSAVDNATFGVFDTLGS
Ga0211505_103553613300020352MarineMLKQIFTDKMSDYKVVDIILKIWVAGLLSMVVLGLVGVISHIIMNPSSIDNATFGVFDTLGN
Ga0211505_107074633300020352MarineMEVIKQIFGDKMSDYKVVDIILKIWVAGLLSMVVLGLIAVISHIIINPSSIDNATFGVFDTLGS
Ga0211576_1028412333300020438MarineMEVIKQIFGDKMSDYKVVDIMLKIWVAGLLSMVVLGLVAVISHIIMNPSSVDNATFGVFDTLGS
Ga0206677_1001760943300021085SeawaterMEVIKQIFGDKMSDYKIVDIMLKIWVAGLLSMVVLGLVAVISHIIMNPSSVDNATFGVFDTLGS
Ga0206677_1002099363300021085SeawaterMEVIKQIFGDKMSDYKIVDIILKVWVAGLLSMVVLGLVAVISHIIMNPSSIDNATFGVFDTLGN
Ga0206677_1002264843300021085SeawaterMITTLTEIFRDRMSDYKVVDVIVKVWLAVLLVMFVLGLGTIITHIIMNPSAVDNATFGIFDTLGS
Ga0206677_1002309743300021085SeawaterMLKEIFTEKMSDYKIVDIILKIWVAGLLSMAVLGLIGVITHIIMNPSAIDNATFGVFDTLGN
Ga0213859_10000206383300021364SeawaterMITQIFTDKMSDYKFMDVILKIWIGGLMIMWAVGMVAIISHIIMNPSAVDNATFGIFDTL
Ga0213869_1003763043300021375SeawaterMEVIKQIFGDKMSDYKVVDIILKIWVAGLLSMVVLGLVAVISHIIMNPSAVDNATFGVFDTLGY
Ga0222718_1053810313300021958Estuarine WaterMEVIKQIFGDKMSDYKIVDIILKVWVAGLLSMAVLGLIGVITHIIMNPSSVDNATFGVFDTLGS
(restricted) Ga0233433_1040045723300022931SeawaterMEVIKQIFTDKMSDYKIVDIILKVWVAGLLSMVVLGLVAVISHIIMNPSSVDNATFGIFDTLGS
Ga0228682_102127613300023698SeawaterMEVIKQIFGDKMSDYKIVDIMLKIWVAGLLSMVVLGLVAVISHIIMNPSSVDNATFGVFD
Ga0228695_101446013300023699SeawaterMLKEIFTEKMSDYKIVDIILKIWVAGLLSMAVLGLIGVITHIIMNPSAIDNATFGVFDTL
(restricted) Ga0233438_1003797743300024255SeawaterMLKQIFTEKMSDYKIVDIILKIWVAGLLSMAVLGLIGVITHIIMNPSAIDNATFGVFDTLGN
(restricted) Ga0233437_115605833300024259SeawaterMEVIKQIFGDKMSDYKIVDIMLKIWVAGLLSMVVLGLVAVISHIIMNPSSVDNATFGIFDTLGS
(restricted) Ga0233439_1019793223300024261SeawaterMEVIKQIFTEKMSDYKIVDIILKVWVAGLLSMVVLGLVAVISHIIMNPSSVDNATFGIFDTLGS
Ga0228664_103119833300024294SeawaterMITMLKEIFTEKMSDYKIVDIILKIWVAGLLSMAVLGLIGVITHIIMNPSAIDNATFGVFDTLGN
Ga0228672_114834613300024335SeawaterMEVIKQIFGDKMSDYKIVDIMLKIWVAGLLSMVVLGLVAVISHIIMNPSSVDNATFG
Ga0244777_1023378833300024343EstuarineMEVIKQIFTDKMSDYKIVDIILKIWVAGLLSMAVLGLIGVITHIIMNPSAVDNATFGVFDTLGN
Ga0244775_1008698643300024346EstuarineMLKQIFTEKMSDYKIVDIILKIWVAGLLSMAVLGLIGVITHIIMNPSAVDNATFGVFDTLGN
Ga0244775_1010267953300024346EstuarineMEVIKQIFGDKMSDYKIVDIILKVWVAGLLSMVVLGLVAVISHIIMNPSSVDNATFGVFDTLGS
Ga0244776_1029064223300024348EstuarineMEVIKQIFGDKMSDYKIVDIILKVWVAGLLSMVVLGLVAVISHIIINPSSIDNATFGVFDTLGS
Ga0228662_103771043300024415SeawaterMEVIKQIFGDKMSDYKIVDIMLKIWVAGLLSMVVLGLVAVISHIIMNPSSVDNATFGV
Ga0208791_102227543300025083MarineMEVIKQIFGDKMSDYKVVDIMLKIWVAGLLSMVVLGLIAVISHIIINPSSIDNATFGVFDTLGS
Ga0209336_1000465343300025137MarineMEVIKEIFADKMSDYKVVDIVLKIWVAGLLSMVVLGLVAVISHIIMNPSSVDNATFGVFDTLGY
Ga0209601_114246913300025666Pelagic MarineMEVIKQIFGDKMSDYKIVDIILKIWIAGLLSMVVLGLIGVISHIIMNPSSIDNATFGVFDTLGS
Ga0209505_101056263300025690Pelagic MarineMEVIKQIFGDKMSDYKIVDIILKIWVAGLLSMVVLGLVAVISHIIMNPSAVDNATFGIFDTLGN
Ga0209771_100920153300025701MarineMEVIKQIFTEKMSDYKIVDIILKIWVAGLLSMAVLGLIGVITHIIMNPSAIDNATFGVFDTLGN
Ga0208899_110586733300025759AqueousMNVLLEIWKDKLSDYVIMDYILKIWVTVLLVMVVLGLGAIISHIIMNPSAIDNATFGIFDTLGS
Ga0209714_113234423300025822Pelagic MarineMEVIKQIFVEKISDYKIVDIILKIWIAGLLSMVVLGLIGVISHIIMNPSAVDNATFGIFDTLGN
Ga0209335_1008363443300025894Pelagic MarineMEVIKQIFGDKMSDYKIVDIILKVWVAGLLSMVVLGLVAVISHIIMNPSSIDNATFGVFDTLGS
Ga0247604_105417243300026460SeawaterMEVIKQIFGDKMSDYKIVDIMLKIWVAGLLSMVVLGLVAVISHIIMNPSSVDNATFGVFDTL
Ga0247598_114181033300026466SeawaterMEVIKQIFGDKMSDYKIVDIMLKIWVAGLLSMVVLGLVAVISHIIMNPSSVDNATFGVFDTLG
Ga0228622_101909833300026479SeawaterMEVIKQIFGDKMSDYKIVDIMLKIWVAGLLSMVVLGLVAVISHIIMNPSSVDNATFGVFDTLGN
Ga0233395_109955713300026511SeawaterIFGDKMSDYKIVDIILKVWVAGLLSMAVLGLIGVITHIIMNPSAIDNATFGVFDTLGN
Ga0209092_1018537523300027833MarineMEVIKQIFVEKISDYKIVDIILKIWVAGLLSMVVLGLIGVITHIIMNPSAIDNATFGIFDTLGN

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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