Basic Information | |
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Family ID | F105175 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 100 |
Average Sequence Length | 50 residues |
Representative Sequence | MSDGKDLNGFTSPKVNDAPVWNGVQYAADPKPAFPATDKSSQDGAGLGNGGK |
Number of Associated Samples | 79 |
Number of Associated Scaffolds | 100 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 90.00 % |
% of genes near scaffold ends (potentially truncated) | 7.00 % |
% of genes from short scaffolds (< 2000 bps) | 33.00 % |
Associated GOLD sequencing projects | 74 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.19 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (75.000 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake (20.000 % of family members) |
Environment Ontology (ENVO) | Unclassified (44.000 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) (66.000 % of family members) |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 10.00% β-sheet: 0.00% Coil/Unstructured: 90.00% | Feature Viewer |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.19 |
Powered by PDBe Molstar |
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Pfam ID | Name | % Frequency in 100 Family Scaffolds |
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PF13640 | 2OG-FeII_Oxy_3 | 8.00 |
PF00166 | Cpn10 | 5.00 |
PF01923 | Cob_adeno_trans | 4.00 |
PF13186 | SPASM | 4.00 |
PF00085 | Thioredoxin | 4.00 |
PF02675 | AdoMet_dc | 3.00 |
PF09834 | DUF2061 | 3.00 |
PF01053 | Cys_Met_Meta_PP | 3.00 |
PF04973 | NMN_transporter | 2.00 |
PF13578 | Methyltransf_24 | 1.00 |
COG ID | Name | Functional Category | % Frequency in 100 Family Scaffolds |
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COG0234 | Co-chaperonin GroES (HSP10) | Posttranslational modification, protein turnover, chaperones [O] | 5.00 |
COG0075 | Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucG | Amino acid transport and metabolism [E] | 3.00 |
COG0156 | 7-keto-8-aminopelargonate synthetase or related enzyme | Coenzyme transport and metabolism [H] | 3.00 |
COG0399 | dTDP-4-amino-4,6-dideoxygalactose transaminase | Cell wall/membrane/envelope biogenesis [M] | 3.00 |
COG0436 | Aspartate/methionine/tyrosine aminotransferase | Amino acid transport and metabolism [E] | 3.00 |
COG0520 | Selenocysteine lyase/Cysteine desulfurase | Amino acid transport and metabolism [E] | 3.00 |
COG0626 | Cystathionine beta-lyase/cystathionine gamma-synthase | Amino acid transport and metabolism [E] | 3.00 |
COG1586 | S-adenosylmethionine decarboxylase | Amino acid transport and metabolism [E] | 3.00 |
COG1921 | Seryl-tRNA(Sec) selenium transferase | Translation, ribosomal structure and biogenesis [J] | 3.00 |
COG1982 | Arginine/lysine/ornithine decarboxylase | Amino acid transport and metabolism [E] | 3.00 |
COG2008 | Threonine aldolase | Amino acid transport and metabolism [E] | 3.00 |
COG2873 | O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent | Amino acid transport and metabolism [E] | 3.00 |
COG4100 | Cystathionine beta-lyase family protein involved in aluminum resistance | Inorganic ion transport and metabolism [P] | 3.00 |
COG3201 | Nicotinamide riboside transporter PnuC | Coenzyme transport and metabolism [H] | 2.00 |
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Name | Rank | Taxonomy | Distribution |
Unclassified | root | N/A | 75.00 % |
All Organisms | root | All Organisms | 25.00 % |
Visualization |
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Powered by ApexCharts |
Scaffold | Taxonomy | Length | IMG/M Link |
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3300001968|GOS2236_1049874 | Not Available | 1580 | Open in IMG/M |
3300002408|B570J29032_109955222 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 7142 | Open in IMG/M |
3300003413|JGI25922J50271_10001374 | Not Available | 7089 | Open in IMG/M |
3300003499|JGI25930J51415_1019786 | All Organisms → Viruses → Predicted Viral | 1274 | Open in IMG/M |
3300004112|Ga0065166_10235824 | Not Available | 731 | Open in IMG/M |
3300005417|Ga0068884_1456623 | Not Available | 778 | Open in IMG/M |
3300005527|Ga0068876_10099642 | All Organisms → Viruses → Predicted Viral | 1734 | Open in IMG/M |
3300005527|Ga0068876_10205348 | Not Available | 1142 | Open in IMG/M |
3300005528|Ga0068872_10011082 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 6371 | Open in IMG/M |
3300005528|Ga0068872_10693674 | Not Available | 535 | Open in IMG/M |
3300005662|Ga0078894_10004379 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 10797 | Open in IMG/M |
3300005662|Ga0078894_10020967 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 5283 | Open in IMG/M |
3300005662|Ga0078894_10036256 | All Organisms → Viruses → Predicted Viral | 4099 | Open in IMG/M |
3300005662|Ga0078894_10421596 | Not Available | 1204 | Open in IMG/M |
3300005805|Ga0079957_1027603 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 3815 | Open in IMG/M |
3300006030|Ga0075470_10131412 | Not Available | 738 | Open in IMG/M |
3300007169|Ga0102976_1025988 | Not Available | 1169 | Open in IMG/M |
3300007171|Ga0102977_1109189 | Not Available | 1224 | Open in IMG/M |
3300007708|Ga0102859_1000122 | Not Available | 16904 | Open in IMG/M |
3300008107|Ga0114340_1004257 | Not Available | 7811 | Open in IMG/M |
3300008110|Ga0114343_1034112 | All Organisms → Viruses → Predicted Viral | 2096 | Open in IMG/M |
3300008116|Ga0114350_1002782 | All Organisms → cellular organisms → Bacteria | 9314 | Open in IMG/M |
3300008120|Ga0114355_1043593 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 2103 | Open in IMG/M |
3300008510|Ga0110928_1038192 | Not Available | 550 | Open in IMG/M |
3300010354|Ga0129333_10980630 | Not Available | 711 | Open in IMG/M |
3300011268|Ga0151620_1155312 | Not Available | 702 | Open in IMG/M |
3300012717|Ga0157609_1081950 | Not Available | 508 | Open in IMG/M |
3300012968|Ga0129337_1111767 | Not Available | 548 | Open in IMG/M |
3300013087|Ga0163212_1077878 | Not Available | 1083 | Open in IMG/M |
(restricted) 3300013126|Ga0172367_10066917 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 2714 | Open in IMG/M |
(restricted) 3300013126|Ga0172367_10400157 | Not Available | 777 | Open in IMG/M |
3300017788|Ga0169931_10042757 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 5051 | Open in IMG/M |
3300017788|Ga0169931_10073309 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 3458 | Open in IMG/M |
3300020048|Ga0207193_1012504 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 11637 | Open in IMG/M |
3300020141|Ga0211732_1061301 | Not Available | 44174 | Open in IMG/M |
3300020519|Ga0208223_1009676 | All Organisms → Viruses → Predicted Viral | 1561 | Open in IMG/M |
3300020524|Ga0208858_1018337 | Not Available | 1092 | Open in IMG/M |
3300020566|Ga0208222_1041886 | Not Available | 826 | Open in IMG/M |
3300021141|Ga0214163_1035422 | Not Available | 1387 | Open in IMG/M |
3300021961|Ga0222714_10005018 | Not Available | 12727 | Open in IMG/M |
3300021961|Ga0222714_10101021 | All Organisms → Viruses → Predicted Viral | 1825 | Open in IMG/M |
3300021961|Ga0222714_10479761 | Not Available | 642 | Open in IMG/M |
3300024306|Ga0255148_1056049 | Not Available | 693 | Open in IMG/M |
3300024346|Ga0244775_10103393 | All Organisms → Viruses → Predicted Viral | 2421 | Open in IMG/M |
3300024482|Ga0255265_1088040 | Not Available | 599 | Open in IMG/M |
3300024533|Ga0256299_1129068 | Not Available | 504 | Open in IMG/M |
3300024867|Ga0255267_1064795 | Not Available | 850 | Open in IMG/M |
3300025585|Ga0208546_1081262 | Not Available | 740 | Open in IMG/M |
3300027697|Ga0209033_1015960 | All Organisms → Viruses → Predicted Viral | 3171 | Open in IMG/M |
3300027710|Ga0209599_10003595 | Not Available | 5887 | Open in IMG/M |
3300027759|Ga0209296_1003711 | Not Available | 10325 | Open in IMG/M |
3300027769|Ga0209770_10005669 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 5910 | Open in IMG/M |
3300027769|Ga0209770_10024776 | All Organisms → Viruses → Predicted Viral | 2627 | Open in IMG/M |
3300028025|Ga0247723_1014961 | All Organisms → Viruses → Predicted Viral | 2805 | Open in IMG/M |
3300029930|Ga0119944_1000382 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 7747 | Open in IMG/M |
3300029930|Ga0119944_1045944 | Not Available | 531 | Open in IMG/M |
3300031758|Ga0315907_10173646 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1817 | Open in IMG/M |
3300031758|Ga0315907_10651608 | Not Available | 809 | Open in IMG/M |
3300033557|Ga0316617_100771191 | Not Available | 917 | Open in IMG/M |
3300034013|Ga0334991_0000390 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 43050 | Open in IMG/M |
Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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Habitat | Taxonomy | Distribution |
Freshwater Lake | Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake | 20.00% |
Freshwater | Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater | 16.00% |
Freshwater | Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater | 11.00% |
Freshwater | Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater | 6.00% |
Freshwater, Plankton | Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton | 5.00% |
Freshwater | Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater | 4.00% |
Aqueous | Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous | 4.00% |
Estuarine | Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine | 4.00% |
Freshwater | Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater | 3.00% |
Estuarine Water | Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water | 3.00% |
Freshwater Lake | Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake | 2.00% |
Freshwater Lake | Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake | 2.00% |
Freshwater | Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater | 2.00% |
Aquatic | Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic | 2.00% |
Freshwater Lentic | Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic | 1.00% |
Freshwater And Sediment | Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment | 1.00% |
Freshwater Lake | Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake | 1.00% |
Lake | Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake | 1.00% |
Freshwater Lake Sediment | Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment | 1.00% |
Freshwater | Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater | 1.00% |
Freshwater | Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater | 1.00% |
Water Bodies | Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Water Bodies | 1.00% |
Freshwater To Marine Saline Gradient | Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient | 1.00% |
Estuary Water | Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water | 1.00% |
Marine | Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine | 1.00% |
Estuarine | Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine | 1.00% |
Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 1.00% |
Deep Subsurface | Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface | 1.00% |
Deep Subsurface Sediment | Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment | 1.00% |
Estuary | Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary | 1.00% |
Visualization |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Taxon OID | Sample Name | Habitat Type | IMG/M Link |
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3300001968 | Marine microbial communities from Lake Gatun, Panama - GS020 | Environmental | Open in IMG/M |
3300002408 | Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123) | Environmental | Open in IMG/M |
3300002835 | Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605) | Environmental | Open in IMG/M |
3300003413 | Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD | Environmental | Open in IMG/M |
3300003499 | Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN | Environmental | Open in IMG/M |
3300004096 | Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (version 2) | Environmental | Open in IMG/M |
3300004112 | Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 2) | Environmental | Open in IMG/M |
3300004795 | Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300005417 | Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaT (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300005517 | Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (version 4) | Environmental | Open in IMG/M |
3300005527 | Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG | Environmental | Open in IMG/M |
3300005528 | Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG | Environmental | Open in IMG/M |
3300005585 | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ON33MSRF | Environmental | Open in IMG/M |
3300005662 | Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4) | Environmental | Open in IMG/M |
3300005805 | Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA | Environmental | Open in IMG/M |
3300006030 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA | Environmental | Open in IMG/M |
3300006484 | Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535 | Environmental | Open in IMG/M |
3300007169 | Combined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Diel cycle-Bottom layer) 8 sequencing projects | Environmental | Open in IMG/M |
3300007171 | Combined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Diel cycle-Surface layer) 8 sequencing projects | Environmental | Open in IMG/M |
3300007708 | Estuarine microbial communities from the Columbia River estuary - metaG 1371B-02 | Environmental | Open in IMG/M |
3300007954 | Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1373B_0.2um | Environmental | Open in IMG/M |
3300008055 | Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393 | Host-Associated | Open in IMG/M |
3300008107 | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA | Environmental | Open in IMG/M |
3300008110 | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-3-NA | Environmental | Open in IMG/M |
3300008116 | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA | Environmental | Open in IMG/M |
3300008120 | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-3-NA | Environmental | Open in IMG/M |
3300008510 | Microbial Communities in Water bodies, Singapore - Site RA | Environmental | Open in IMG/M |
3300010354 | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA | Environmental | Open in IMG/M |
3300011268 | Sub-surface freshwater microbial communities from San Francisco Estuary Delta, California, USA . Combined Assembly of Gp0173482, Gp0175554, Gp0175555 | Environmental | Open in IMG/M |
3300012000 | Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A | Environmental | Open in IMG/M |
3300012667 | Freshwater microbial communities from Maskinonge River, Ontario, Canada - S15 | Environmental | Open in IMG/M |
3300012717 | Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES135 metaT (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300012968 | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.2_RNA1 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300012970 | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.2_RNA2 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300013087 | Freshwater microbial communities from Lake Malawi, Central Region, Malawi to study Microbial Dark Matter (Phase II) - Malawi_45m_30L | Environmental | Open in IMG/M |
3300013126 (restricted) | Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10m | Environmental | Open in IMG/M |
3300013131 (restricted) | Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_10m | Environmental | Open in IMG/M |
3300017788 | Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L | Environmental | Open in IMG/M |
3300020048 | Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915 | Environmental | Open in IMG/M |
3300020074 | Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015017 Mahale Deep Cast 200m | Environmental | Open in IMG/M |
3300020141 | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1 | Environmental | Open in IMG/M |
3300020499 | Freshwater microbial communities from Lake Mendota, WI - 14SEP2009 deep hole epilimnion (SPAdes) | Environmental | Open in IMG/M |
3300020519 | Freshwater microbial communities from Lake Mendota, WI - 07OCT2009 deep hole epilimnion ns (SPAdes) | Environmental | Open in IMG/M |
3300020524 | Freshwater microbial communities from Lake Mendota, WI - 16NOV2012 deep hole epilimnion (SPAdes) | Environmental | Open in IMG/M |
3300020542 | Freshwater microbial communities from Lake Mendota, WI - 05NOV2012 deep hole epilimnion (SPAdes) | Environmental | Open in IMG/M |
3300020552 | Freshwater microbial communities from Lake Mendota, WI - 06JUL2012 deep hole epilimnion (SPAdes) | Environmental | Open in IMG/M |
3300020566 | Freshwater microbial communities from Lake Mendota, WI - 13SEP2009 deep hole epilimnion (SPAdes) | Environmental | Open in IMG/M |
3300021141 | Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion | Environmental | Open in IMG/M |
3300021961 | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D | Environmental | Open in IMG/M |
3300024306 | Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepB_8h | Environmental | Open in IMG/M |
3300024346 | Whole water sample coassembly | Environmental | Open in IMG/M |
3300024351 | Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepA_0h | Environmental | Open in IMG/M |
3300024481 | Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepC_0h (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300024482 | Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepA_0h (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300024484 | Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepB_8h (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300024533 | Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Miss_RepC_8h (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300024561 | Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_UVDOM_RepA_8d (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300024864 | Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atlam_RepA_8h (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300024867 | Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Yuk_RepA_8h (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300025585 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes) | Environmental | Open in IMG/M |
3300026569 | Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepA_8d (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300026572 | Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atl_RepB_8h (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300026573 | Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Yuk_RepC_8h (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300027123 | Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepA_8d | Environmental | Open in IMG/M |
3300027697 | Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN (SPAdes) | Environmental | Open in IMG/M |
3300027710 | Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes) | Environmental | Open in IMG/M |
3300027759 | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes) | Environmental | Open in IMG/M |
3300027769 | Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes) | Environmental | Open in IMG/M |
3300027805 | Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes) | Environmental | Open in IMG/M |
3300028025 | Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC | Environmental | Open in IMG/M |
3300028112 | Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepB_8h (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300028275 | Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atl_RepB_8d | Environmental | Open in IMG/M |
3300029930 | Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727 | Environmental | Open in IMG/M |
3300031758 | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123 | Environmental | Open in IMG/M |
3300033557 | Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D2_B | Environmental | Open in IMG/M |
3300034013 | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jun2018-rr0034 | Environmental | Open in IMG/M |
3300034020 | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2015-rr0055 | Environmental | Open in IMG/M |
3300034066 | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087 | Environmental | Open in IMG/M |
3300034200 | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2013-rr0190 | Environmental | Open in IMG/M |
Geographical Distribution | |
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Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Protein ID | Sample Taxon ID | Habitat | Sequence |
GOS2236_10498742 | 3300001968 | Marine | MADGKDLNGFTSPKVNDSSVWNGVQYASDPAAAFPSTDKSTQDGAGLGQGGK* |
B570J29032_1099552226 | 3300002408 | Freshwater | MSDGKDLNGFTSPKVDDSTVWGNNEQYAADPKAAFPSTDVSNQAQAQGPK* |
B570J40625_1009945742 | 3300002835 | Freshwater | SPKVNDSTVWGNNEQYAADPKSAFPSTDVSNQAQAQGPK* |
JGI25922J50271_100013745 | 3300003413 | Freshwater Lake | MSDGKDLNGFTSPXVNDSTVWGNNEQYAADPKAAFPSTDVSNQAQAQGPK* |
JGI25930J51415_10197866 | 3300003499 | Freshwater Lake | MADGKDLNGFTSPKVNDASVWNGVQYAADPASAFPATDKSSQDGAGLGNGGK* |
Ga0066177_102880963 | 3300004096 | Freshwater Lake | NMSDGKDLNGFTSPKVNDSTVWGNNEQYAADPKAAFPSTDVSNQAQAQGPK* |
Ga0065166_102358243 | 3300004112 | Freshwater Lake | MADGKDLNGFTSPKVNDAPVWATESYTEAPAAAFPATDKSSQDGAGLGNGG |
Ga0007756_116545053 | 3300004795 | Freshwater Lake | MSDGKDLNGFTSPKVNDSTVWGNNEQYAADPKAAFPSTDVSNQAQAQ |
Ga0068884_14566231 | 3300005417 | Freshwater Lake | MADGKDLNGFTSPKVNDASVWSGEQYAADPAAAFPATDMSNQASAQGPK* |
Ga0070374_104779991 | 3300005517 | Freshwater Lake | MSDGKDLNGFTSPKVNDSTVWGNNEQYASDPKAAFPSTDVSNQAQAQGPK* |
Ga0068876_100996421 | 3300005527 | Freshwater Lake | MADGKDLNGFTSPKVNDASVWNGVQYAADPASAFPATDKSSQDGSGLGNGGK* |
Ga0068876_102053483 | 3300005527 | Freshwater Lake | MADGKDLNGFTGPKVNDAPVWNGVQYAADPKPAFPATDKSSQDGAGLGNGGK* |
Ga0068872_1001108210 | 3300005528 | Freshwater Lake | MSDGKNLNGFNETKPSAAGVWNGVQYASDPKQAFPATDKSSQDGAGLNNGGK* |
Ga0068872_102544445 | 3300005528 | Freshwater Lake | MSDGKDLNGFTSPKVNDAPVWNGVQYAADPKPAFPATDKSSQDGAGLGNGGK* |
Ga0068872_106936742 | 3300005528 | Freshwater Lake | MSDGINLGGFAAPKVNDATVWNGEQYAADPAAAFPAQDKSTQGPAGTTKK* |
Ga0049084_100447402 | 3300005585 | Freshwater Lentic | MSDGKDLNGFTSPKVNDSTVWGNNEQYAADPKAAFPSTDVSNQAQAQGPK* |
Ga0078894_100043796 | 3300005662 | Freshwater Lake | MSDGKDLNGFTSPKVNDSTVWGNNEQYAADPKSAFPSTDVSNQAQAQGPK* |
Ga0078894_100209673 | 3300005662 | Freshwater Lake | MADGINLDGFTAPKVEAPGSWNGEQYAADPASAFPASDVSNQASAQGPK* |
Ga0078894_100362569 | 3300005662 | Freshwater Lake | MADGKDLNGFTSPKVNDAPVWATESYTEAPAAAFPATDKSSQDGAGLGNGGK* |
Ga0078894_104215961 | 3300005662 | Freshwater Lake | MDGKDLNGFTAPKVNDAPVWDGVQYAADPASAFPATDKSSQDGAGLGNGGK* |
Ga0078894_112313292 | 3300005662 | Freshwater Lake | MSDGKDLNGFTSPKVNDATVWGNNEQYAADPKAAFPSTDVSNQAQAQGPK* |
Ga0079957_10276035 | 3300005805 | Lake | MSDGKDLNGFTSPKVNDASVWNGVQYAADPKPAFPATDKSSQDSAGLGNGGK* |
Ga0075470_101314122 | 3300006030 | Aqueous | MAEGINLDGFTGPKVNDAPVWNGEQYAADPAAAFPAEDKSTQGPAGTTKK* |
Ga0070744_100420785 | 3300006484 | Estuarine | MSDGKDLNGFTSPKVNDSTVWGNNEQYAADPKAAFPSTDVSNQAQGQGPK* |
Ga0102976_10259884 | 3300007169 | Freshwater Lake | MSDGKDLNGFTSPKVSDTPVWNGVQYAADPASAFPSTDKSTQDGAGLGQGGK* |
Ga0102977_10761015 | 3300007171 | Freshwater Lake | MSDGKDLNGFTSPKVSDTPVWNGVQYAADPAAAFPSTDKSTQDGAGLGQGGK* |
Ga0102977_11091894 | 3300007171 | Freshwater Lake | MADGINLDGFTGPKVNDAPVWNGEQYAADPAAAFPAEDKSTQGPAGTTKK* |
Ga0102859_100012226 | 3300007708 | Estuarine | MSDGKDLNGFTSPKVNDSTVWGSNEQYAADPKAAFPSTDVSNQAQAQGPK* |
Ga0105739_11687681 | 3300007954 | Estuary Water | NMSDGKDLNGFTSPKVNDSTVWGSNEQYAADPKAAFPSTDVSNQAQAQGPK* |
Ga0108970_112629312 | 3300008055 | Estuary | MADGINLDGFTSPKVNDASVWNGVQYAADPASAFPATDKSSQDGSGLGNGGK* |
Ga0114340_10042578 | 3300008107 | Freshwater, Plankton | MADGKDLNGFTSPKVNDSSVWNGVQYAADPASAFPSTDKSSQDGAGLGNGGK* |
Ga0114340_10435276 | 3300008107 | Freshwater, Plankton | MSDGKDLNGFTSPKVNDAPVWTNNEQYAADPKAAFPASDVSNQAQAQGPK* |
Ga0114343_10341124 | 3300008110 | Freshwater, Plankton | MADGKDLNGFTSSKVNDASVWNGVQYAADPASAFPAADKSSQDGAGLGNGGK* |
Ga0114350_100278218 | 3300008116 | Freshwater, Plankton | MAEGINLDGFTGPKVNAAPVWNGEQYAADPAAAFPAEDKSTQGPAGTTKK* |
Ga0114355_10435933 | 3300008120 | Freshwater, Plankton | MADGKDLNGFTSPKVNDAPVWNGVQYASDPAAAFPATDKSTQDGAGLGQGGK* |
Ga0110928_10381921 | 3300008510 | Water Bodies | MAEGINLDGFTGPKVNDAPVWNGEQYAADPATAFPAEDKSTQGPAGTTKK* |
Ga0129333_109806302 | 3300010354 | Freshwater To Marine Saline Gradient | MSDGKDLNGFTSPKVNDAPVWNGVQYASDPKPAFPATDKSSQDGAGLNNGGK* |
Ga0151620_11553123 | 3300011268 | Freshwater | MDGKDLNGFTAPKVNDAPVWAPESYTEAPAAAFPATDKSSQDGAGLGNGGK* |
Ga0119951_11498282 | 3300012000 | Freshwater | MADGKDLNGFTSPKVNDATVWNGVQYAADPASAFPAADKSSQDGAGL |
Ga0157208_100351523 | 3300012667 | Freshwater | MSDGKDLNGFTSPKVNDSTVWGSNEQYAADPKSAFPSTDVSNQAQAQGPK* |
Ga0157609_10819501 | 3300012717 | Freshwater | MSDGKDLNGFTSPKVNDAPVWTNNEQYAADPKAAFPASDVSSQAQAQGPK* |
Ga0129337_11117671 | 3300012968 | Aqueous | MADGKDLNGFTSPKVNDAPVWNGVQYAADPKPAFPSTDKSSQDGAGLGNGGK* |
Ga0129338_12638653 | 3300012970 | Aqueous | MADGKDVNGFTSPKVKDASGWNGVQYAADPASAFPATDKSSQDGSGLGNGGK* |
Ga0163212_10778781 | 3300013087 | Freshwater | MSDGKDLNGFTSPKVNDTPVWSGEQYAADPKAAFPAEDKSTQGPAGTTKK* |
(restricted) Ga0172367_100669174 | 3300013126 | Freshwater | MTDGKDLNGFTSPKVNDASPWSSNEQYAQDPKAAFPSTDKSSQDGAGLGNGGK* |
(restricted) Ga0172367_104001573 | 3300013126 | Freshwater | MSDGINLDGFTAPKVNDAPVWNGEQYAADPAAAFPAEDKSTQGPAGTTKK* |
(restricted) Ga0172373_102140664 | 3300013131 | Freshwater | MADGINLDGFTAPKVNDAPVWNGEQYAADPAAAFPAEDKSTQGPAGTTKK* |
Ga0169931_100427574 | 3300017788 | Freshwater | MTDGKDLNGFTSPKVNDASPWSSNEQYAQDPKAAFPSTDKSSQDGAGLGNGGK |
Ga0169931_100733093 | 3300017788 | Freshwater | MSDGKDLNGFTSPKVSDTPVWNGVQYAADPASAFPSTDKSTQDGAGLGQGGK |
Ga0207193_101250421 | 3300020048 | Freshwater Lake Sediment | MSDGKDLNGFTSPKVNDSTVWGNNEQYAADPKAAFPSTDVSNQAQAQGPK |
Ga0194113_110082752 | 3300020074 | Freshwater Lake | MSDGKDLNGFTSPKVNDTPVWSGEQYAADPKAAFPAEDKSTQGPAGTTKK |
Ga0211732_106130164 | 3300020141 | Freshwater | MSDGKDLNGFTSPKVNDSTVWGNNEQYAADPKSAFPSTDVSNQAQAQGPK |
Ga0208084_10249131 | 3300020499 | Freshwater | MSDGKNLNGFNETKPSAAGVWNGVQYASDPKQAFPATDKSSQDGAGLNNGGK |
Ga0208223_10096761 | 3300020519 | Freshwater | MADGKDLNGFTSPKVNDASVWSGEQYAADPAAAFPATDMSNQASAQGPK |
Ga0208858_10183372 | 3300020524 | Freshwater | MSDGKDLNGFTSPKVDDSTVWGNNEQYAADPKAAFPSTDVSNQAQAQGPK |
Ga0208857_10033707 | 3300020542 | Freshwater | DLNGFTSPKVDDSTVWGNNEQYAADPKAAFPSTDVSNQAQAQGPK |
Ga0207940_10495871 | 3300020552 | Freshwater | MSDGKDLNGFTSPKVNDSTVWGNNEQYAADPKAAFPSTDVSNQAQAQG |
Ga0208222_10418864 | 3300020566 | Freshwater | NKMADGKDLNGFTSPKVNDASVWSGEQYAADPAAAFPATDMSNQASAQGPK |
Ga0214163_10354224 | 3300021141 | Freshwater | MTDGINLDGFTAPKVEAPGSWNGEQYAADPASAFPASDVSNQASAQGPK |
Ga0222714_100050189 | 3300021961 | Estuarine Water | MDGKDLNGFTAPKVNDAPVWAPESYTEAPAAAFPATDKSSQDGAGLGNGGK |
Ga0222714_101010217 | 3300021961 | Estuarine Water | MADGKDLNGFTSPKVNDASVWNGEQYAADPAAAFPATDVSNQASAQGPK |
Ga0222714_104797613 | 3300021961 | Estuarine Water | MSDGKDLNGFTSPKVNDAPVWTNNEQYAADPKAAFPASDVSNQAQAQGPK |
Ga0255148_10560491 | 3300024306 | Freshwater | YRRNKMADGINLDGFTGPKVNDAPVWNGVQYAADPKPAFPATDKSSQDGAGLGNGGK |
Ga0244775_100978092 | 3300024346 | Estuarine | MSDGKDLNGFTSPKVNDSTVWGNNEQYAADPKAAFPSTDVSNQAQGQGPK |
Ga0244775_101033937 | 3300024346 | Estuarine | MDGKDLNGFTAPKVNDAPVWDGVQYAADPASAFPATDKSSQDGAGLGNGGK |
Ga0244775_105222701 | 3300024346 | Estuarine | MSDGKDLNGFTSPKVNDSTVWGSNEQYAADPKAAFPSTDVSNQAQAQGPK |
Ga0255141_10094953 | 3300024351 | Freshwater | MTDGINLDGFTSPKVNDATVWNGEQYAADPAAAFPAEDKSTQGPAGTTKK |
Ga0255141_10661181 | 3300024351 | Freshwater | MADGKDLNGFTSPKVNDAPVWNGVQYASDPAAAFPATDKSTQDGAGLGQGGK |
Ga0256330_10397682 | 3300024481 | Freshwater | MADGINLDGFTGPKVNDAPVWNGEQYAADPDKNFSATDKSTQDGAGLGNGGK |
Ga0255265_10880403 | 3300024482 | Freshwater | IGDIKMADGINLDGFTSPKVNDATVWNGEQYAADPAAAFPAEDKSTQGPAGTTKK |
Ga0256332_10911153 | 3300024484 | Freshwater | ADGKDLNGFTSPKVNDAPVWNGVQYASDPAAAFPATDKSTQDGAGLGQGGK |
Ga0256299_11290681 | 3300024533 | Freshwater | ADGKDLNGFTSPKVNDASVWNGVQYAADPASAFPATDKSSQDGSGLGNGGK |
Ga0255288_11219973 | 3300024561 | Freshwater | RNKMADGKDLNGFTGPKVNDAPVWNGVQYAADPKPAFPATDKSSQDGAGLGNGGK |
Ga0255271_11168361 | 3300024864 | Freshwater | ADGKDLNGFTGPKVNDAPVWNGVQYAADPKPAFPATDKSSQDGAGLGNGGK |
Ga0255267_10647952 | 3300024867 | Freshwater | MTDGKDLNGFTGPKVNDAPVWNGVQYAADPKPAFPATDKSSQDGSGLGNGGK |
Ga0208546_10812623 | 3300025585 | Aqueous | MAEGINLDGFTGPKVNDAPVWNGEQYAADPAAAFPAEDKSTQGPAGTTKK |
Ga0255277_11478791 | 3300026569 | Freshwater | MADGKDLNGFTSPKVNDAPVWNGVQYAADPKPAFPSTDKSSQDGAGLGNGGK |
Ga0255270_11575561 | 3300026572 | Freshwater | KPIGENKMADGKDLNGFTSPKVNDAPVWNGVQYASDPAAAFPATDKSTQDGAGLGQGGK |
Ga0255269_11998803 | 3300026573 | Freshwater | GKDLNGFTSPKVNDAPVWNGVQYASDPAAAFPATDKSTQDGAGLGQGGK |
Ga0255090_10289451 | 3300027123 | Freshwater | MADGKDLNGFTSPKVNDASVWSGEQYAADPAAAFPATDMSNQAS |
Ga0209033_10159605 | 3300027697 | Freshwater Lake | MADGKDLNGFTSPKVNDASVWNGVQYAADPASAFPATDKSSQDGAGLGNGGK |
Ga0209599_100035953 | 3300027710 | Deep Subsurface | MADGKDLNGFTSPKVNDAPVWATESYTEAPAAAFPATDKSSQDGAGLGNGGK |
Ga0209296_100371122 | 3300027759 | Freshwater Lake | MSDGKDLNGFTSPKVEAASTWNGEQYAADPASAFPSTDKSTQDGSGVGNNGK |
Ga0209770_100056692 | 3300027769 | Freshwater Lake | MSDGKDLNGFTSPKVNDSTVWGNNEQYASDPKAAFPSTDVSNQAQAQGPK |
Ga0209770_1002477610 | 3300027769 | Freshwater Lake | MADGINLDGFTAPKVEAPGSWNGEQYAADPASAFPASDVSNQASAQGPK |
Ga0209229_104044271 | 3300027805 | Freshwater And Sediment | MSDGKDLNGFTSPKVNNSTVWGNNEQYAADPKSAFPASDVSNQ |
Ga0247723_10149613 | 3300028025 | Deep Subsurface Sediment | MADGKDLNGFTSPKVNDASVWTGEQYAADPAAAFPATDMSNQASAQGPK |
Ga0256335_12013673 | 3300028112 | Freshwater | ADGINLDGFTGPKVNDAPVWNGVQYAADPKPAFPATDKSSQDGAGLGNGGK |
Ga0255174_10737451 | 3300028275 | Freshwater | MADGINLDGFTGPKVNDAPVWNGVQYAADPKPAFPATDKSSQDGAGLGNGGK |
Ga0119944_100038221 | 3300029930 | Aquatic | MADGKDLNGFTSPKVNDASPWSSNEQYAQDPKAAFPSTDKSSQDGAGLGNGGK |
Ga0119944_10459442 | 3300029930 | Aquatic | MSDGKDLNGFTSPKVSDTPVWNGVQYAADPAAAFPSTDKSTQDGAGLGQGGK |
Ga0315907_101736466 | 3300031758 | Freshwater | MSDGKDLNGFTSPKVNDAPVWNGVQYAADPKPAFPATDKSSQDGAGLGNGGK |
Ga0315907_105007221 | 3300031758 | Freshwater | MAEGINLDGFTGPKVNAAPVWNGEQYAADPAAAFPAEDKSTQGPAGTTKK |
Ga0315907_106516082 | 3300031758 | Freshwater | MSDGINLGGFAAPKVNDATVWNGEQYAADPAAAFPAQDKSTQGPAGTTKK |
Ga0315907_108601313 | 3300031758 | Freshwater | DGKDLNGFTGPKVNDAPVWNGVQYAADPKPAFPATDKSSQDGAGLGNGGK |
Ga0316617_1007711911 | 3300033557 | Soil | KDLNGFTSPKVKDAPVRNGVQNAPDPAAAFPATHKTSQDGAGLGNGGK |
Ga0334991_0000390_2_148 | 3300034013 | Freshwater | DGKDLNGFTSPKVNDSTVWGNNEQYAADPKAAFPSTDVSNQAQAQGPK |
Ga0335002_0423146_29_181 | 3300034020 | Freshwater | MSDGKDLNGFTSPKVNDAPVWTNNEQYAADPKAAFPASDVSSQAQAQGPK |
Ga0335019_0257132_989_1108 | 3300034066 | Freshwater | SPKVNDSTVWGNNEQYAADPKAAFPSTDVSNQAQAQGPK |
Ga0335065_0745966_3_125 | 3300034200 | Freshwater | MSDGKDLNGFTSPKVNDATVWGNNEQYAADPKAAFPSTDVS |
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