NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F105188

Metagenome Family F105188

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105188
Family Type Metagenome
Number of Sequences 100
Average Sequence Length 49 residues
Representative Sequence MRLFSLIFISAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYILRNKLD
Number of Associated Samples 89
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Archaea
% of genes with valid RBS motifs 9.00 %
% of genes near scaffold ends (potentially truncated) 37.00 %
% of genes from short scaffolds (< 2000 bps) 84.00 %
Associated GOLD sequencing projects 82
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Archaea (45.000 % of family members)
NCBI Taxonomy ID 2157
Taxonomy All Organisms → cellular organisms → Archaea

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine
(25.000 % of family members)
Environment Ontology (ENVO) Unclassified
(48.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(51.000 % of family members)


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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 82.35%    β-sheet: 0.00%    Coil/Unstructured: 17.65%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF13578Methyltransf_24 6.00
PF00383dCMP_cyt_deam_1 5.00
PF13412HTH_24 4.00
PF05050Methyltransf_21 2.00
PF02769AIRS_C 2.00
PF00004AAA 1.00
PF13395HNH_4 1.00
PF10263SprT-like 1.00
PF06067DUF932 1.00


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms62.00 %
UnclassifiedrootN/A38.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2236876003|none_p017430Not Available536Open in IMG/M
3300000882|FwDRAFT_10023115All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon762Open in IMG/M
3300002835|B570J40625_100299336All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon1632Open in IMG/M
3300002835|B570J40625_100623697All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales982Open in IMG/M
3300003277|JGI25908J49247_10018861All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium2070Open in IMG/M
3300004481|Ga0069718_11550269All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon964Open in IMG/M
3300005528|Ga0068872_10324295All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon849Open in IMG/M
3300005581|Ga0049081_10035938All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon1883Open in IMG/M
3300005581|Ga0049081_10339148All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon511Open in IMG/M
3300005582|Ga0049080_10039134All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium1648Open in IMG/M
3300005583|Ga0049085_10252582All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium578Open in IMG/M
3300005584|Ga0049082_10039752All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium1648Open in IMG/M
3300005758|Ga0078117_1033210All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon2108Open in IMG/M
3300005941|Ga0070743_10115386All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon899Open in IMG/M
3300006484|Ga0070744_10007769Not Available3203Open in IMG/M
3300006484|Ga0070744_10078328Not Available958Open in IMG/M
3300007169|Ga0102976_1078530All Organisms → cellular organisms → Bacteria2371Open in IMG/M
3300007177|Ga0102978_1077162All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon3200Open in IMG/M
3300007546|Ga0102874_1006782Not Available3803Open in IMG/M
3300007547|Ga0102875_1086932All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon1004Open in IMG/M
3300007549|Ga0102879_1234888All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium549Open in IMG/M
3300007551|Ga0102881_1063085All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon1033Open in IMG/M
3300007593|Ga0102918_1018780All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon1858Open in IMG/M
3300007617|Ga0102897_1186294All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium624Open in IMG/M
3300007624|Ga0102878_1115597All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon789Open in IMG/M
3300007644|Ga0102902_1056910All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon1171Open in IMG/M
3300007670|Ga0102862_1018113All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon1610Open in IMG/M
3300008021|Ga0102922_1303491All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium500Open in IMG/M
3300008113|Ga0114346_1207227All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon776Open in IMG/M
3300008120|Ga0114355_1001755Not Available15993Open in IMG/M
3300008267|Ga0114364_1038682All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon1799Open in IMG/M
3300008950|Ga0102891_1024608Not Available1910Open in IMG/M
3300008950|Ga0102891_1070103All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon1074Open in IMG/M
3300008961|Ga0102887_1154767Not Available708Open in IMG/M
3300008996|Ga0102831_1009310Not Available3492Open in IMG/M
3300009049|Ga0102911_1159851Not Available638Open in IMG/M
3300009050|Ga0102909_1083804Not Available779Open in IMG/M
3300009058|Ga0102854_1206756Not Available563Open in IMG/M
3300009068|Ga0114973_10685532Not Available522Open in IMG/M
3300009079|Ga0102814_10148696Not Available1281Open in IMG/M
3300009086|Ga0102812_10063291All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon2048Open in IMG/M
3300009152|Ga0114980_10384708Not Available807Open in IMG/M
3300009155|Ga0114968_10753223Not Available508Open in IMG/M
3300009158|Ga0114977_10019408All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon4271Open in IMG/M
3300009159|Ga0114978_10363300Not Available873Open in IMG/M
3300009181|Ga0114969_10363884Not Available837Open in IMG/M
3300010160|Ga0114967_10519297Not Available580Open in IMG/M
3300011011|Ga0139556_1005612All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium1828Open in IMG/M
3300012013|Ga0153805_1015220All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon1316Open in IMG/M
3300012017|Ga0153801_1098176Not Available517Open in IMG/M
3300012666|Ga0157498_1054392All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon614Open in IMG/M
3300013006|Ga0164294_10693246All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon688Open in IMG/M
3300013014|Ga0164295_10117627All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon1972Open in IMG/M
3300013295|Ga0170791_12357879Not Available617Open in IMG/M
3300017766|Ga0181343_1188226All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon568Open in IMG/M
3300017774|Ga0181358_1055295All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium1492Open in IMG/M
3300017777|Ga0181357_1150390Not Available858Open in IMG/M
3300017777|Ga0181357_1243224Not Available627Open in IMG/M
3300017784|Ga0181348_1091310Not Available1197Open in IMG/M
3300017784|Ga0181348_1304408Not Available533Open in IMG/M
3300019784|Ga0181359_1066009All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium1377Open in IMG/M
3300019784|Ga0181359_1246357Not Available545Open in IMG/M
3300020151|Ga0211736_10480779All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon585Open in IMG/M
3300020160|Ga0211733_10522733All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon2535Open in IMG/M
3300020161|Ga0211726_10361473All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon1045Open in IMG/M
3300020172|Ga0211729_10770040Not Available574Open in IMG/M
3300020506|Ga0208091_1018791All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon810Open in IMG/M
3300020536|Ga0207939_1026880All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon772Open in IMG/M
3300021960|Ga0222715_10052736All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon2797Open in IMG/M
3300021961|Ga0222714_10220789All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon1081Open in IMG/M
3300021961|Ga0222714_10391338All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon736Open in IMG/M
3300021962|Ga0222713_10297249Not Available1030Open in IMG/M
3300021963|Ga0222712_10635130Not Available611Open in IMG/M
3300022407|Ga0181351_1241268Not Available570Open in IMG/M
3300024343|Ga0244777_10149945Not Available1506Open in IMG/M
3300024346|Ga0244775_11224504Not Available584Open in IMG/M
3300024346|Ga0244775_11476888Not Available520Open in IMG/M
3300024348|Ga0244776_10025945Not Available4771Open in IMG/M
3300027214|Ga0208306_1078133All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium549Open in IMG/M
3300027227|Ga0208929_1058561All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon785Open in IMG/M
3300027294|Ga0208441_1015226All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon1947Open in IMG/M
3300027608|Ga0208974_1125321All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium668Open in IMG/M
3300027659|Ga0208975_1009858Not Available3313Open in IMG/M
3300027659|Ga0208975_1073116All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon1022Open in IMG/M
3300027733|Ga0209297_1015669All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon3644Open in IMG/M
3300027734|Ga0209087_1298634Not Available575Open in IMG/M
3300027753|Ga0208305_10167245All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium801Open in IMG/M
3300027772|Ga0209768_10091628All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium1510Open in IMG/M
3300027785|Ga0209246_10084666All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium1237Open in IMG/M
3300027969|Ga0209191_1123208Not Available1082Open in IMG/M
(restricted) 3300027977|Ga0247834_1008837All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon9970Open in IMG/M
3300029930|Ga0119944_1006738All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon1814Open in IMG/M
3300031787|Ga0315900_10408607All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon1068Open in IMG/M
3300031857|Ga0315909_10186973All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon1658Open in IMG/M
3300031857|Ga0315909_10232897All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon1429Open in IMG/M
3300032093|Ga0315902_10629686All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon893Open in IMG/M
3300033816|Ga0334980_0186718Not Available837Open in IMG/M
3300033980|Ga0334981_0353721Not Available638Open in IMG/M
3300033996|Ga0334979_0257289All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon1007Open in IMG/M
3300034284|Ga0335013_0259442All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon1123Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine25.00%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake13.00%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake10.00%
Freshwater LenticEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic8.00%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater7.00%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater7.00%
EstuarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine5.00%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water5.00%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater4.00%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater3.00%
Freshwater, PlanktonEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton3.00%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake2.00%
SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment1.00%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater1.00%
Lake WaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water1.00%
Freshwater, Surface IceEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Surface Ice1.00%
Freshwater And MarineEnvironmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater And Marine1.00%
AquaticEnvironmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic1.00%
Surface IceEnvironmental → Aquatic → Freshwater → Ice → Unclassified → Surface Ice1.00%
Marine EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Marine Estuarine1.00%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2236876003Estuarine microbial communities from Columbia River, sample from South Channel ETM site, GS313-0p8-ETM-15mEnvironmentalOpen in IMG/M
3300000882Freshwater microbial communities from the Columbia RiverEnvironmentalOpen in IMG/M
3300002835Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)EnvironmentalOpen in IMG/M
3300003277Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SDEnvironmentalOpen in IMG/M
3300004481Combined Assembly of Gp0112041, Gp0112042, Gp0112043EnvironmentalOpen in IMG/M
3300005528Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaGEnvironmentalOpen in IMG/M
3300005581Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRFEnvironmentalOpen in IMG/M
3300005582Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRFEnvironmentalOpen in IMG/M
3300005583Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRFEnvironmentalOpen in IMG/M
3300005584Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRFEnvironmentalOpen in IMG/M
3300005758Cyanobacteria communities in tropical freswater systems - freshwater lake in SingaporeEnvironmentalOpen in IMG/M
3300005941Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697EnvironmentalOpen in IMG/M
3300006484Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535EnvironmentalOpen in IMG/M
3300007169Combined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Diel cycle-Bottom layer) 8 sequencing projectsEnvironmentalOpen in IMG/M
3300007177Combined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Diel cycle-Surface and Bottom layers) 16 sequencing projectsEnvironmentalOpen in IMG/M
3300007546Estuarine microbial communities from the Columbia River estuary - metaG 1547A-02EnvironmentalOpen in IMG/M
3300007547Estuarine microbial communities from the Columbia River estuary - metaG 1547B-02EnvironmentalOpen in IMG/M
3300007549Estuarine microbial communities from the Columbia River estuary - metaG 1548B-02EnvironmentalOpen in IMG/M
3300007551Estuarine microbial communities from the Columbia River estuary - metaG 1549B-3EnvironmentalOpen in IMG/M
3300007593Estuarine microbial communities from the Columbia River estuary - metaG 1563A-3EnvironmentalOpen in IMG/M
3300007617Estuarine microbial communities from the Columbia River estuary - metaG 1554B-02EnvironmentalOpen in IMG/M
3300007624Estuarine microbial communities from the Columbia River estuary - metaG 1548A-02EnvironmentalOpen in IMG/M
3300007644Estuarine microbial communities from the Columbia River estuary - metaG 1555B-02EnvironmentalOpen in IMG/M
3300007670Estuarine microbial communities from the Columbia River estuary - metaG 1449C-3EnvironmentalOpen in IMG/M
3300008021Estuarine microbial communities from the Columbia River estuary - metaG 1569A-3EnvironmentalOpen in IMG/M
3300008113Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NAEnvironmentalOpen in IMG/M
3300008120Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-3-NAEnvironmentalOpen in IMG/M
3300008267Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTREnvironmentalOpen in IMG/M
3300008950Estuarine microbial communities from the Columbia River estuary - metaG 1552A-02EnvironmentalOpen in IMG/M
3300008961Estuarine microbial communities from the Columbia River estuary - metaG 1550B-02EnvironmentalOpen in IMG/M
3300008996Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.747EnvironmentalOpen in IMG/M
3300009049Estuarine microbial communities from the Columbia River estuary - metaG 1558A-02EnvironmentalOpen in IMG/M
3300009050Estuarine microbial communities from the Columbia River estuary - metaG 1557A-02EnvironmentalOpen in IMG/M
3300009058Estuarine microbial communities from the Columbia River estuary - metaG 1370A-02EnvironmentalOpen in IMG/M
3300009068Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaGEnvironmentalOpen in IMG/M
3300009079Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.741EnvironmentalOpen in IMG/M
3300009086Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.713EnvironmentalOpen in IMG/M
3300009152Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaGEnvironmentalOpen in IMG/M
3300009155Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaGEnvironmentalOpen in IMG/M
3300009158Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaGEnvironmentalOpen in IMG/M
3300009159Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaGEnvironmentalOpen in IMG/M
3300009181Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaGEnvironmentalOpen in IMG/M
3300010160Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaGEnvironmentalOpen in IMG/M
3300011011Freshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Top - Depth 1mEnvironmentalOpen in IMG/M
3300012013Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 67 - Surface IceEnvironmentalOpen in IMG/M
3300012017Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 1208 - Top - Depth 1mEnvironmentalOpen in IMG/M
3300012666Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 1208 - Surface Ice version 2EnvironmentalOpen in IMG/M
3300013006Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaGEnvironmentalOpen in IMG/M
3300013014Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES006 metaGEnvironmentalOpen in IMG/M
3300013295northern Canada Lakes metatranscriptome co-assemblyEnvironmentalOpen in IMG/M
3300017766Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.S.DEnvironmentalOpen in IMG/M
3300017774Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.DEnvironmentalOpen in IMG/M
3300017777Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.D.NEnvironmentalOpen in IMG/M
3300017784Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.D.NEnvironmentalOpen in IMG/M
3300019784Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.DEnvironmentalOpen in IMG/M
3300020151Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1EnvironmentalOpen in IMG/M
3300020160Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1EnvironmentalOpen in IMG/M
3300020161Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1EnvironmentalOpen in IMG/M
3300020172Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1EnvironmentalOpen in IMG/M
3300020506Freshwater microbial communities from Lake Mendota, WI - 26OCT2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020536Freshwater microbial communities from Lake Mendota, WI - 02JUN2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300021960Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9DEnvironmentalOpen in IMG/M
3300021961Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3DEnvironmentalOpen in IMG/M
3300021962Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649DEnvironmentalOpen in IMG/M
3300021963Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657DEnvironmentalOpen in IMG/M
3300022407Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.DEnvironmentalOpen in IMG/M
3300024343Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fractionEnvironmentalOpen in IMG/M
3300024346Whole water sample coassemblyEnvironmentalOpen in IMG/M
33000243480.2um to 3um size fraction coassemblyEnvironmentalOpen in IMG/M
3300027214Estuarine microbial communities from the Columbia River estuary - metaG 1449A-02 (SPAdes)EnvironmentalOpen in IMG/M
3300027227Estuarine microbial communities from the Columbia River estuary - metaG 1548A-02 (SPAdes)EnvironmentalOpen in IMG/M
3300027294Estuarine microbial communities from the Columbia River estuary - metaG 1548B-02 (SPAdes)EnvironmentalOpen in IMG/M
3300027608Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027659Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027733Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027734Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027753Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.741 (SPAdes)EnvironmentalOpen in IMG/M
3300027772Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SD (SPAdes)EnvironmentalOpen in IMG/M
3300027785Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SN (SPAdes)EnvironmentalOpen in IMG/M
3300027969Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027977 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_12mEnvironmentalOpen in IMG/M
3300029930Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727EnvironmentalOpen in IMG/M
3300031787Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114EnvironmentalOpen in IMG/M
3300031857Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125EnvironmentalOpen in IMG/M
3300032093Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA117EnvironmentalOpen in IMG/M
3300033816Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005EnvironmentalOpen in IMG/M
3300033980Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME09Aug2015-rr0007EnvironmentalOpen in IMG/M
3300033996Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004EnvironmentalOpen in IMG/M
3300034284Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jul2016-rr0075EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
none_01743022236876003Marine EstuarineMRLFSLVFISAALGLAISIFLYKVYNINIPPLFTGLTINAIGYYILKNKLD
FwDRAFT_1002311543300000882Freshwater And MarineMRLFSLVFVSAALGLAISMFLYKVYNINIPPLFTGLAINAIGYYILRNK
B570J40625_10029933633300002835FreshwaterMKLFSLIFISAALGLTISILLFKLWNIDIQPLFIGLAINIIGYYIFRKQLDHEC*
B570J40625_10062369723300002835FreshwaterMKLFILVIISAALGLLTSILLYELFNIDFPPLFIGLTINAIGYYIFRKELE*
JGI25908J49247_1001886123300003277Freshwater LakeMRLFSLIFVSAVLGLAISMFLYKVYNINIPPLFTGLTINAIGYYILKNKLD*
Ga0069718_1155026923300004481SedimentMKLFSLIFISAALGLTISILLFKLWKINIQPLFIGLAINAIGYYIFRKQLDYER*
Ga0068872_1032429543300005528Freshwater LakeMKLFSLIFISAALGLTTSILLYKFYNLDISPLFTGLTFNAIGYYFMEDEP*
Ga0049081_1003593823300005581Freshwater LenticMRLFSLIFVSAALGLAISIFLYKVYNINIPPLFTGLTINAIGYYILKNKLD*
Ga0049081_1033914813300005581Freshwater LenticMKLFILIFVSAALGLTTSILMYKMFNIDFPPFFIGLSINAIGYYIFRKKINEDRD*
Ga0049080_1003913423300005582Freshwater LenticMRLFSLIFISAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYILKNKLD*
Ga0049085_1025258223300005583Freshwater LenticMRLFSLIFVSAVLGLAISMFLYKVYNINIPPLFTGLAINAIGYYILKNKLD*
Ga0049082_1003975233300005584Freshwater LenticMRLFSLIFVSAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYILKNKLD*
Ga0078117_103321023300005758Lake WaterMRLFSLIFISAAMGLATSILLYKIYKIDISPFFTGLFFNAIGYYLLRKKLD*
Ga0070743_1011538643300005941EstuarineMRLFSLVFISAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYILKNKLD*
Ga0070744_1000776973300006484EstuarineMKLFILIFVSAALGLTTSILMYKMFNIDFPPFFIGLSINAIGYYIFRKKINEDRN*
Ga0070744_1007832823300006484EstuarineMRLFSLVFVSAVLGLAISMFLYKVYNINIPPLFTGLTINAIGYYILKNKLD*
Ga0102976_107853063300007169Freshwater LakeMRLFSLIFISAAMGLATSILLYKIYKIDISPFFTGLFFNAIGY
Ga0102978_107716233300007177Freshwater LakeMKLFLLVFISAALGLTISILLYRYLLVNVSPLITGLSINAIGYYFLKKKLD*
Ga0102874_100678273300007546EstuarineMKLFILIFVSAALGLTTSILMYEMFNIDFPPFFIGLSINAIGYYIFRKKINEDRD*
Ga0102875_108693213300007547EstuarineMRLFSLVFISAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYILRNKLD*
Ga0102879_123488823300007549EstuarineLFSLVFVSAALCLAISIFLYKVYNINIPPLFTGLAINAIGYYILKNKLD*
Ga0102881_106308513300007551EstuarineMRLFSLVFISAALGLAISIFLYKVYNINIPPLFTGLAI
Ga0102918_101878063300007593EstuarineMRLFSLVFVSAVLGLAISIFLYKVYNINIPPLFTGL
Ga0102897_118629413300007617EstuarineTRMRLFSLIFVSAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYILKNKLD*
Ga0102878_111559743300007624EstuarineMRLFSLVFISAALGLAISIFLYKVYNINIPPLFTGLTINAIGYYILKNK
Ga0102902_105691013300007644EstuarineMRLFSLVFISAALGLAISIFLYKGYNINIPPLFTGLAINAIGYYILRNKLD*
Ga0102862_101811353300007670EstuarineMRLFSLVFVSAAIGLAISIFLYKVYNINIPPLFTGLAINAIGYYILKNKLD*
Ga0102922_130349123300008021EstuarineLGLAISMFLYKVYNINIPPLFTGLTINAIGYYILKNKLD*
Ga0114346_120722723300008113Freshwater, PlanktonMKLFSLIFISAALGLTISILLFKLWKIDIQPLFIGLVINIIGYYIFRKQLDHEC*
Ga0114355_1001755173300008120Freshwater, PlanktonMKLFSLIFISAALGLITSILLYEQFKTNFPPLFIGLAINAIGYYIFRKSINEDCDQ*
Ga0114364_103868223300008267Freshwater, PlanktonMKLFSLIFISAALGLTVSILLFKLWKIDISPFFTGLFFNAIGYQLFKTKLDL*
Ga0102891_102460843300008950EstuarineAVLGLAISMFLYKVYNINIPPLFTGLAINAIGYYILKNKLD*
Ga0102891_107010343300008950EstuarineMRLFSLIFVSAVLGLAISIFLYKVYNINIPPLFTGLTINAIGYYIL
Ga0102887_115476713300008961EstuarineMRLFSLVFVSAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYILRNKLN*
Ga0102831_100931013300008996EstuarineIFVSAALGLTTSILMYKMFNIDFPPLFIGLSINAIGYYIFRKKINEDRD*
Ga0102911_115985113300009049EstuarineGLAISMFLYKVYNINIPPLFTGLAINAIGYYILKNKLD*
Ga0102909_108380433300009050EstuarineMRLFSLVFVSAALGLAISMFLYKVYNINIPPLFTGLTINAIGYYILKNKLD*
Ga0102854_120675613300009058EstuarineMRLFSLVFISAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYTLRNKLD*
Ga0114973_1068553213300009068Freshwater LakeLFSLIFVSAVLGLAISMFLYKVYNINIPPLFTGLTINAIGYYILKNKLD*
Ga0102814_1014869623300009079EstuarineMRLFSLVFISAALGLAISIFLYKVYNINIPPLFTGLTINAIGYYILKNKLD*
Ga0102812_1006329163300009086EstuarineMRLFSLIFVSAALGLAISIFLYKVYNINIPPLFTGLT
Ga0114980_1038470813300009152Freshwater LakeMRLFSLVFVSAVLGLAISIFLYKVYNINIPPLFTGLAINAIGYYILRNKLD*
Ga0114968_1075322313300009155Freshwater LakeMRLFSLVFVSAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYILRNKLE*
Ga0114977_1001940853300009158Freshwater LakeMRLFSLIFVSAVLGLAISIFLYKIYNINIPPLFTGLTINAIGYYILKNELD*
Ga0114978_1036330013300009159Freshwater LakeMRLFSLVFVSAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYILRNKLD*
Ga0114969_1036388413300009181Freshwater LakeRLFSLVFVSAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYILKNKLD*
Ga0114967_1051929723300010160Freshwater LakeMRLFSLIFVSAVLGLAISIFLYKVYNINIPPLFTGLAINAIGYYILKNKLD*
Ga0139556_100561223300011011FreshwaterMRLFSLIFVSAALGLAISMFLYKVYNINIPPLFTGLAINAIGYYILKNKLD*
Ga0153805_101522043300012013Surface IceMRLFSLVFISAALGLAISIFLYKVYNINIPPLFTGLTINAIGYYILRNKLD*
Ga0153801_109817623300012017FreshwaterMRLFSLIFISAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYILRNKLD*
Ga0157498_105439223300012666Freshwater, Surface IceMRLFSLVFISAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYIFRNKLD*
Ga0164294_1069324633300013006FreshwaterMRLFTLVFVSAALGLAISMFLYKVYNINIPPLFTGLTINAIGYYILKNKLD*
Ga0164295_1011762753300013014FreshwaterMRLFTLVFVSAALGLAISIFLYKVYNINIPPLFTGLTINAIGYYILKNKLD*
Ga0170791_1235787913300013295FreshwaterSAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYIFRNKLD*
Ga0181343_118822613300017766Freshwater LakeIFISAALGLTISILLFKLWKIDIQPLFIGLAINCIGYYIFRKQLDHEC
Ga0181358_105529523300017774Freshwater LakeMRLFSLIFISAALGLAISIFLYKVYNINIPPLFTGLTINAIGYYILKNKLD
Ga0181357_115039023300017777Freshwater LakeLGLAISMFLYKVYNINIPPLFTGLAINAIGYYILKNKLD
Ga0181357_124322413300017777Freshwater LakeMRLFSLIFVSAVLGLAISMFLYKVYNINIPPLFTGLAINAIGYYIL
Ga0181348_109131013300017784Freshwater LakeAALGLTTSILMYEMFNIDFPPFFIGLSINAIGYYIFRKKINEDRD
Ga0181348_130440823300017784Freshwater LakeMRLFSLIFVSAVLGSAISMFLYKVYNINIPPLFTGLTINAIGYY
Ga0181359_106600923300019784Freshwater LakeMRLFSLIFVSAALGLAISMFLYKVYNINIPPLFTGLTINAIGYYILKNKLD
Ga0181359_124635713300019784Freshwater LakeMRLFSLVFISAALGLAISIFLYKVYNINIPPLFTGLTINAIGYYILRNKLD
Ga0211736_1048077933300020151FreshwaterISAALGLTISILLFKLWNINIQPLFIGLVINAIGYYILRNKLD
Ga0211733_1052273353300020160FreshwaterMKLFSLIFISAALGLTISILLFKLWNINIQPLFFGLIINAIGYYILKNKLD
Ga0211726_1036147313300020161FreshwaterMKLFSLIFISAVLGLMISILLFKLWNINIQPLFIGLVINAIGYYILRNK
Ga0211729_1077004033300020172FreshwaterMKLFSLIFISAVLGLMISILLFKLWNINIQPLFFGLVINAIGYYILRNK
Ga0208091_101879113300020506FreshwaterRVLNMKLFSLIFISAALGLTISILLFKLWNIDIQPLFIGLAINIIGYYIFRKQLDHEC
Ga0207939_102688023300020536FreshwaterMKLFSLIFISAALGLTISILLFKLWNIDIQPLFIGLAINIIGYYIFRKQLDHEC
Ga0222715_10052736103300021960Estuarine WaterMKLFSLVFISAALGLTTSILLYKVYKIDISPLFTGLFFNAIGYQ
Ga0222714_1022078943300021961Estuarine WaterMKLFSLIFISAALGLTVSILLFKLWKIDISPFFTGLSINAIGYYILRKKLD
Ga0222714_1039133823300021961Estuarine WaterMKLFSLIFISAALGLTISILLFKLWKINIQPLFIGLVINIIGYYIFRKQLDYER
Ga0222713_1029724913300021962Estuarine WaterMRLFSLVFVSAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYILRNKLD
Ga0222712_1063513013300021963Estuarine WaterMRLFSLVFVSAALGLAISIFFYKVYNINIPPLFTGLAINAIGYYILRNKLD
Ga0181351_124126823300022407Freshwater LakeMRLFSLIFVSAALGLAISMFLYKVYNINIPPLFTGLAINAIGYYILKNKLD
Ga0244777_1014994523300024343EstuarineMRLFSLVFISAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYILRNKLD
Ga0244775_1122450433300024346EstuarineMKLFILIFVSAALGLTTSILMYKMFNIDFPPFFIGLSINAIGYYIFRKKINEDRD
Ga0244775_1147688823300024346EstuarineMRLFSLIFVSAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYILKNKLD
Ga0244776_1002594543300024348EstuarineMKLFILIFVSAALGLTTSILMYEMFNIDFPPFFIGLSINAIGYYIFRKKINEDRD
Ga0208306_107813323300027214EstuarineMRLFSLVFVSAALGLAISMFLYKVYNINIPPLFTGLTINAIGYYILKNKLD
Ga0208929_105856143300027227EstuarineMRLFSLVFISAALGLAISIFLYKVYNINIPPLFTGLTINAIGYYILKN
Ga0208441_101522613300027294EstuarineMRLFSLIFVSAVLGLAISMFLYKVYNINIPPLFTGLAINA
Ga0208974_112532123300027608Freshwater LenticMRLFSLIFISAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYILKNKLD
Ga0208975_100985813300027659Freshwater LenticMKLFILIFVSAALGLTTSILMYKMFNIDFPPLFIGLSINAIGYYIFRKKINEDRD
Ga0208975_107311613300027659Freshwater LenticMKLFSLIFISAALGLTISILLFKLWNIDIQPLFIGLAINTIGYYIF
Ga0209297_101566963300027733Freshwater LakeMRLFSLVFVSAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYIFRNKLE
Ga0209087_129863423300027734Freshwater LakeYRTRMRLFSLIFVSAVLGLAISIFLYKIYNINIPPLFTGLTINAIGYYILKNELD
Ga0208305_1016724523300027753EstuarineMRLFSLVFISAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYILKNKLD
Ga0209768_1009162853300027772Freshwater LakeMRLFSLIFVSAVLGLAISMFLYKVYNINIPPLFTGLAINAIGYYILKNKLD
Ga0209246_1008466623300027785Freshwater LakeAISMFLYKVYNINIPPLFTGLAINAIGYYILKNKLD
Ga0209191_112320833300027969Freshwater LakeMRLFSLVFVSAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYILRNKLE
(restricted) Ga0247834_100883733300027977FreshwaterMKLFSLIFISAALGLTISILLFKLWKIDISPFFTGLAINAIGYYIFRKQLDHEC
Ga0119944_100673843300029930AquaticMKLFSLVFISAALGLTTSILLYKVYKIDISPLFTGLFFNAIGYQLFKTKLNK
Ga0315900_1040860733300031787FreshwaterMKLFSLIFISAALGLTISILLFKLWKIDIQPLFIGLVINIIGYYIFRKEL
Ga0315909_1018697333300031857FreshwaterMKLFSLVFISAALGLTTSILLYKVYKIDISPLFTGLFFNAIGYQLFKTKLNE
Ga0315909_1023289713300031857FreshwaterMKLFSLIFISAALGLTTSILLYKFYNLDISPLFTGLTFNAIGYYFLKK
Ga0315902_1062968643300032093FreshwaterMKLFSLIFISAALGLTISILLFKLWKIDIQPLFIGLAINAIGYYIFRKS
Ga0334980_0186718_535_6903300033816FreshwaterMKLFILVIISAALGLLTSILLYELFNIDFPPLFIGLTINAIGYYIFRKELE
Ga0334981_0353721_295_4503300033980FreshwaterMRLFSLVFISAALGLAISIFLYKVYSINIPPLFTGLAINAIGYYILRNKLD
Ga0334979_0257289_881_10063300033996FreshwaterMRLFSLVFISAALGLAISIFLYKVYNINIPPLFTGLAINAIG
Ga0335013_0259442_1_1323300034284FreshwaterMRLFSLVFISAALGLAISIFLYKVYNINIPPLFTGLAINAIGYY

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