Metagenome / Metatranscriptome Family F105269

Basic Information
Family ID	F105269
Family Type	Metagenome / Metatranscriptome
Number of Sequences	100
Average Sequence Length	68 residues
Representative Sequence	MGTRENSIATWCKRFQIDLWKLRDRMKSGELTVYEKRADGKVDITPAAMVKLKELITQIEGALLDE
Number of Associated Samples	74
Number of Associated Scaffolds	100

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	15.38 %
% of genes near scaffold ends (potentially truncated)	3.00 %
% of genes from short scaffolds (< 2000 bps)	12.00 %
Associated GOLD sequencing projects	68
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (98.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (19.000 % of family members)
Environment Ontology (ENVO)	Unclassified (35.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (63.000 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 60.61% β-sheet: 4.55% Coil/Unstructured: 34.85%
Feature Viewer

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Pfam ID	Name	% Frequency in 100 Family Scaffolds
PF04226	Transgly_assoc	2.00
PF03413	PepSY	2.00
PF03631	Virul_fac_BrkB	2.00
PF05957	DUF883	2.00
PF00072	Response_reg	1.00
PF07883	Cupin_2	1.00
PF05532	CsbD	1.00
PF10605	3HBOH	1.00
PF05239	PRC	1.00

COG ID	Name	Functional Category	% Frequency in 100 Family Scaffolds
COG1295	Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)	Function unknown [S]	2.00
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	2.00
COG4575	Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD/DUF883 family	Translation, ribosomal structure and biogenesis [J]	2.00
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	1.00

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.00 %
All Organisms	root	All Organisms	2.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.00 %
cellular organisms	root	All Organisms → cellular organisms	2.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.00 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	2.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.00 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.00 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.00 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.00 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.00 %
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	1.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.00 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1.00 %

Scaffold	Taxonomy	Length	IMG/M Link
3300005364\|Ga0070673_101220779	Not Available	705	Open in IMG/M
3300006881\|Ga0068865_101829616	Not Available	549	Open in IMG/M
3300009101\|Ga0105247_10207663	Not Available	1319	Open in IMG/M
3300010371\|Ga0134125_10279627	Not Available	1854	Open in IMG/M
3300010373\|Ga0134128_12922765	Not Available	526	Open in IMG/M
3300010375\|Ga0105239_10968464	Not Available	978	Open in IMG/M
3300012957\|Ga0164303_10009659	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	3297	Open in IMG/M
3300012989\|Ga0164305_10775951	Not Available	792	Open in IMG/M
3300013307\|Ga0157372_10760608	Not Available	1126	Open in IMG/M
3300015371\|Ga0132258_11270725	All Organisms → cellular organisms → Bacteria	1860	Open in IMG/M
3300025900\|Ga0207710_10406170	Not Available	699	Open in IMG/M
3300025932\|Ga0207690_11195516	Not Available	635	Open in IMG/M
3300025986\|Ga0207658_11398030	Not Available	640	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	50.00%
Host-Associated	Host-Associated	50.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	49.00%
Plants	Host-Associated → Plants	49.00%
Aquatic	Environmental → Aquatic	1.00%
Human	Host-Associated → Human	1.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	48.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere	25.00%
Rhizoplane	Host-Associated → Plants → Rhizoplane	23.00%
Sediment	Environmental → Aquatic → Sediment	1.00%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	1.00%
Digestive System	Host-Associated → Human → Digestive System	1.00%
Roots	Host-Associated → Plants → Roots	1.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	36.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	16.00%
Loam	Environmental → Terrestrial → Soil → Loam	12.00%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	12.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	11.00%
Soil	Host-Associated → Plants → Rhizosphere → Soil	9.00%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.00%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	1.00%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	1.00%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	16.00%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	12.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	12.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	11.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	9.00%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.00%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.00%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.00%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	1.00%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	1.00%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	19.00%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	11.00%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	11.00%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.00%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	6.00%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	5.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.00%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	4.00%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	4.00%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	4.00%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.00%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.00%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.00%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.00%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	2.00%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.00%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	1.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.00%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	1.00%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	1.00%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.00%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	1.00%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.00%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.00%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	1.00%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.00%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.00%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.00%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004799	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-3 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012515	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.7.yng.070610	Host-Associated	Open in IMG/M
3300012937	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t5i015	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300031455	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 23_S	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300032017	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0058863_110615271	3300004799	Host-Associated	ASAVSSTPMREAMMGTRENSIATWCKRLQIDLWKLRDRMKSGELTVYEKRADGKVDITPAAMVKLKELITQIEGALLDE*
Ga0062594_1002812132	3300005093	Soil	MVTREYSIATWCKRFQIDLWKLRDRMKAGELTVYEKRAEGEVDITPAAMVKLKDLIAEIETALLGE*
Ga0065705_108211961	3300005294	Switchgrass Rhizosphere	MGTRENSIATWCKRFQIDLWKLSDRMKSGELTVYEKRADGKVDITPAAMVKLKELITQIEGVLLDE
Ga0068868_1005732102	3300005338	Miscanthus Rhizosphere	MGTRENSIATWCKRFQIDLWKLSDRMKSGELTVYEKRADGQVDITPAAMVKLKELITQIEGALLDE*
Ga0070689_1021303441	3300005340	Switchgrass Rhizosphere	MGTRENSIATWCKRFQIDLWKLSDRMKSGELTVYEKRADHKVDITPAAMVKLKELITQIEGALLDE*
Ga0070691_100590284	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MGTRENSIATWCKRLQIDLWKLRDRMKSGELTVYEKRADHKVDITPAAMVKLKELITQIEGALLDE*
Ga0070687_1007255882	3300005343	Switchgrass Rhizosphere	MGTRENSIATWCKRFQIDLLKLRDRMKSGELTVYEKRADGQVDITPAAMVKLKELITQIEGALLDE*
Ga0070692_110930372	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MGTRENSIATWCKRFQIDLWKLSDRMKSGELTVYEKRADGKVDITPAAMVKLKELITQIEGALLDE*
Ga0070671_1019248571	3300005355	Switchgrass Rhizosphere	MGTRENSIATWCKRFQIDLWKLRDRMKSGELTVYEKRADGKVDITPAAMVKLKELITQIEGALLDE*
Ga0070673_1012207791	3300005364	Switchgrass Rhizosphere	MREAVMGTRENSIATWCKRFQIDLWKLSDRMKSGELTVYEKRADGQVDITPAAMVKLKELITQIEGALLDE*
Ga0070667_1016941701	3300005367	Switchgrass Rhizosphere	MGTRENSIATWCKRFQIDLLKLRDRMKSGELTVYEKRADRKVDITPAAMVKLKELITQIEGALLDE*
Ga0070705_1003177251	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	REAMMGTRENSIATWCKRFQIDLWKLSDRMKSGELTVYEKRADGKVDITPAAMGKLKELITQIEGALLDE*
Ga0070694_1004018671	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MGTRENSIATWCKRLQIDLWKLLDRMKSGELTVYEKRADGKVDITPAAMVKLKELITQIEGALLDE*
Ga0068867_1009867472	3300005459	Miscanthus Rhizosphere	MGTRENSIATWCKRLQIDLWKLRDRMKSGELTVYEKRADGKVDITPAAMVKLKELITQIDGALLDE*
Ga0068853_1021232052	3300005539	Corn Rhizosphere	MGTRENSIATWCKRFQIDLLKLRDRMKSGELTVYEKRADHKVDITPAAMVKLKELITQIEGALLDE*
Ga0070686_1002674883	3300005544	Switchgrass Rhizosphere	MGTRENSIATWCKRFQIDLWKLSDRMKSGELTVYEKRADGKVDITPAAMGKLKELITQIEGALLDE*
Ga0070695_1001971781	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MREAVMGTRENSIATWCKRCQIDIWKLSDRMKSGELTVYEKRADGKVDITPAAMVKLKELITQIEGALLDE*
Ga0070695_1003588811	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	HSIATWCKRFQIDLWKLHDRMKAGELILYEKRGEDKVNVTHSAMNKIKELISGIERALLDE*
Ga0070696_1012743922	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	IATWCKRFQIDLWNLHDRMKAGELILYEKRGEDKVNVTHSAMNKIKELISGIERALLDE*
Ga0068860_1001172124	3300005843	Switchgrass Rhizosphere	MGTRENSIATWCKRLQIDLWKLRDRMKSGELTVYEKRADGKVDITPAAMVKLKELITQIEGALLDE*
Ga0068871_1015945802	3300006358	Miscanthus Rhizosphere	MREAVMGTRENSIATWCKRFQIDLLKLRDRMKSGELTVYEKRADGQVDITPAAMVKLKELITQIEGALLDE*
Ga0068865_1018296162	3300006881	Miscanthus Rhizosphere	MREAVMGTRENSIATWCKRFQIDLLKLRDRMKSGELTVYEKRADRKVDITPAAMVKLKELITQIEGALLDE*
Ga0105245_105833342	3300009098	Miscanthus Rhizosphere	MREAMMGTRENSIATWCKRLQIDLWKLRDRMKSGELTVHEKRADGKVDITPAAMVKLKELITQIEGALLDE*
Ga0105247_102076631	3300009101	Switchgrass Rhizosphere	MVTREYSIATWCKRFQIDLWKLRDRMKSGELMVYEKRADGKVDITPAAMVKLKELITQIEGALLDE*
Ga0111538_130557602	3300009156	Populus Rhizosphere	MGEALMGTRENSIATWCKRFQIDLLKLRDRMKSGELTVYEKRAEGEVDITPAAMVKLKDLIAEIEGALLDE*
Ga0105241_123290023	3300009174	Corn Rhizosphere	MREAMMGTRENSIATWCKRFQIDLWNLHDRMKAGELILYEKRGEDEVNVTHSAMNKIKELILGI
Ga0105242_102381555	3300009176	Miscanthus Rhizosphere	MREAMMGTRENSIATWCKRHQIDLLKLRDRRKSGELTVYEKRADGKVDITPAAMGKLKELITQIEGALLDE*
Ga0105248_117440971	3300009177	Switchgrass Rhizosphere	MREAVMGTRENSIATWCKRFQIDLWKLSDRMKSGELTVYEKRADGKVDITPAAMGKLKELITQIEGALLDE*
Ga0105248_119170091	3300009177	Switchgrass Rhizosphere	RPPSARRALFAVSCMREAMMGTRENSIATWCKRFQIDLWKLLDRMKSGELTVYEKRADGKVDITSAAMVKLKELITQIEGALLDE*
Ga0105249_127511251	3300009553	Switchgrass Rhizosphere	MREAVMGNSIATWCKRFQIDLWKLSDRMKSGELTVYEKRADGKVDITPAAMVKLKELITQIEGALLDE*
Ga0134125_102796274	3300010371	Terrestrial Soil	MREAMMGTRENSIATWCKRLQIDLWKLRDRMKSGELTVYEKRADGKVDITPAAMVKLKELITQIEGALLDE*
Ga0134125_112119811	3300010371	Terrestrial Soil	PTVATATLLRRGVSFGRRPFCCIVRTMREAVMGTRENSIATWCKRFQIDLLKLRDRMKSGELTVYEKRADHKVDITPAAMVKLKELITQIEGALLDE*
Ga0134128_106217682	3300010373	Terrestrial Soil	CNGPETAMVTREYSIATWCKRFQIDLWKLRDRMKAGELTVYEKRAEGEVDITPAAMVKLKDLIAEIETALLRE*
Ga0134128_110347832	3300010373	Terrestrial Soil	MMGTRENSIATWCKRFQIDLRKLRDRMKSGELTVYEKRADGKVDITPAAMVKLKELITQIEGALLDE*
Ga0134128_129227651	3300010373	Terrestrial Soil	TRENSIATWCKRFQIDLWKLLDRMKSGELAVYEKRADGKVDITPAAMVKLKELITQIEGALLDE*
Ga0105239_109684642	3300010375	Corn Rhizosphere	MREAVMGTRENSIATWCKRFQIDLWKLSDRMKSGELTVYEKRADGKVDITPAAMVKLKELITQIEGALLDE*
Ga0134124_112513813	3300010397	Terrestrial Soil	MREAVMGTRENSIATWCKRFQIDLLKLRDRMKSGELTVYEKRADHKVDITPAAMVKLKELITQIEGALLDE*
Ga0134127_103229783	3300010399	Terrestrial Soil	MMGTRENSIATWCKRLQIDLWKLRDRMKSGELTVYEKRADGKVDITPAAMVKLKELITQIEGALLDE*
Ga0134127_127792631	3300010399	Terrestrial Soil	TWCKRFQIDLWKLRDRMKSGELTVYEKRADGKVDITSAAMVKLKELITQIEGALLDE*
Ga0134122_103349202	3300010400	Terrestrial Soil	EYSIATWCKRFQIDLWKLRDRMKAGELTVYEKRAEGEVDITPAAMVKLKDLIAEIETALLGE*
Ga0134121_105845982	3300010401	Terrestrial Soil	MREAMMGTRENSIATWCKRFQIDLLKLRDRMKSGELTVYEKRADHKVDITPAAMVKLKELITQIEGALLDE*
Ga0134123_112966071	3300010403	Terrestrial Soil	MREAVMGTRENSIATWCKRFQIDLWKLLDRMKSGELTVYEKRADGKVDITPAAMVKLKELITQIEGALLDE*
Ga0157338_10583311	3300012515	Arabidopsis Rhizosphere	MREAVMGTRENSIATWCKRFQIDLWKLSDRMKSGELTVYEKRADGKVDITPAAIIKLKELITQIEGALLDE*
Ga0162653_1000808501	3300012937	Soil	MREAVMGTRENSIATWCKRFQIDLWKQYDRMKAGELILYEKRGEDEVNVAPSAMNKIKELISGIERALLE*
Ga0164300_103019461	3300012951	Soil	NSIATWCKRFQIDLWKLRDRMKSGELTVYEKRTEGKVDITPAAMVKLKELITQIEGALLDE*
Ga0164300_103253211	3300012951	Soil	SIATWCKRFQIDLWKLHDRMKAGELILYEKRGEDEVDVTHPAMNKIKELISGIERALLDE
Ga0164300_105906131	3300012951	Soil	MGTRENSIATWCKRFQIDLWKLHDHMKSGELTVFEKRADGKVDITPAAMVKLKELITQIEGALLDE*
Ga0164300_107915861	3300012951	Soil	MREAMMGTREHSIATWCKRFQIDLWKLRDRMKAGELLVYEKRADGEVDITPAVMVKLKELITEIEGVLLDE*
Ga0164298_101351363	3300012955	Soil	MGEAVMGTRENSIATWCKRFQIDLWKLSDRMKSGELTVYEKRADGKVDITPAAMVKLKELITQIEGALLDE*
Ga0164298_102299302	3300012955	Soil	FGRRPFCCIVHTMREAVMGTRENLIATWCKRFQIDLLKLRDRMKSGELTVYEKRADRKVDITPAAMVKLKELITQIEGALLDE*
Ga0164303_100096591	3300012957	Soil	MREAVVGTRENSIATWCKRFQIDLWKLRDRMKSGELMVYEKRADGKVDITPAAMVKLKELIAQVDEALLDE*
Ga0164303_102069133	3300012957	Soil	MGTRENSIATWCKRFQIDLWKLHDHMKSGELTVFEKRADGKVDITPAAMVKLKELITQIE
Ga0164303_115216791	3300012957	Soil	WCKRFQIDLWKLSDRMKSGELTVCEKRADGKVDITPAAMVKLKELIAQIEGALLDE*
Ga0164301_100229064	3300012960	Soil	MREAVMGTRENSIATWCKRFQIDLWKLSDRMKSGELTVYEKRADGKVDITPAAMVKLKELIAQIEGALLDE*
Ga0164302_101721621	3300012961	Soil	RFQIDLWKLSDRMKSGELTVYEKRADGKVDITPAAMVKLKELITQIEGALLDE*
Ga0164302_101890712	3300012961	Soil	MVTREHSIATWCKRFQIDLWKLRDRMKAGEVTVYEKRVDGEVDITPAAMVKLKELIAEIEGALLDE*
Ga0164302_111089322	3300012961	Soil	MREAVMGTRENSIATWCKRFQIDLWKLSDRMKSGELTVYEKRADGKVDITPAAMVKLK
Ga0164302_116050311	3300012961	Soil	HMREAVMGTRENSIATWCKRFQIDLLKLRDRMKSGELTVYEKRADRKVDITPAAMVKLKELITQIEGALLDE*
Ga0164308_118373641	3300012985	Soil	MGTRENSIATWCKRFQIDLWKLSDRMKSGELTVCEKRADGKVDITPAAMVKLKELIAQIEGALL
Ga0164305_107759512	3300012989	Soil	MREAVMGTRENSIATWCKRFQIDLWKLRDRMKSGELTVYEKRADHKVDITPAAMVKLKELITQIEGALLDE*
Ga0164305_115316142	3300012989	Soil	TPMREAMMGTRENSIATWCKRLQIDLWKLRDRMKSGELTVYEKRADGKVDITPAAMVKLKELITQIEGALLDE*
Ga0164305_120401201	3300012989	Soil	VMGTRENSIATWCKRFQIDLLKLRDRMKSGELTVYEKRADRKVDITPAAMVKLKELITQIEGALLDE*
Ga0157371_107438221	3300013102	Corn Rhizosphere	MREAVMGTRENSIATWCKRFQIDLLKLRDRMKSGELTVYEKRADGKVDITPAAMVKLKELITQIEGALLDE*
Ga0157372_107606083	3300013307	Corn Rhizosphere	ENSIATWCKRFQIDLWKLHDHMKSGELTVFEKRADGKVDITPAAMVKLKELITQIEGALLDE*
Ga0157375_110655062	3300013308	Miscanthus Rhizosphere	CKRLQIDLWKLRDRMKSGELTVYEKRADRKVDITPAAMVKLKELITQIEGALLDE*
Ga0157380_109026161	3300014326	Switchgrass Rhizosphere	MMGTRENSIATWCKRFQIDLRKLRDRMKSGELTVYEKRADRKVDITPAAMVKLKELITQIEGALLDE*
Ga0157379_107127943	3300014968	Switchgrass Rhizosphere	MREAVMGTRENSIATWCKRFQIDLLKLRDRMKSGELTVYEKRADRKVDITPAAMVKLKELITQIESDARLLQASRSS*
Ga0132258_102469207	3300015371	Arabidopsis Rhizosphere	MREAVMGTRENSIATWCKRFQIDLWKLRDRMKAGELTVYEKRADGEVDITPAAMVKLKELITEIEGALLDE*
Ga0132258_104197045	3300015371	Arabidopsis Rhizosphere	MGTRENSIATWCKRFQIDLWKLYDQMKSGELTVYEKRANGKVDITPAAMVKLKELITQIEGALLDE*
Ga0132258_112707252	3300015371	Arabidopsis Rhizosphere	MGTRENSIATWCKRFQIDLWKLRDRMKAGELTIYEKRADGEVDITPAATVKLKELITEIETALLDE*
Ga0132256_1001852843	3300015372	Arabidopsis Rhizosphere	MGTRENSIATWCKRFQIDLWKLHDHMKSGELTVFEKRADGKIDITPAAMVKLKELITQIEGALLDE*
Ga0132256_1003693331	3300015372	Arabidopsis Rhizosphere	MGTRENSIATWCKRFQIDLWKLYDHMKSGELTVYEKRADGKVDITPAAMVKLKELITQIE
Ga0132257_1002516644	3300015373	Arabidopsis Rhizosphere	MREAVMGTRENSIATWCKRFQIDLWKLRDRMKSGELTVYEKRADGKVDITPAAMVKLKEVITQIERALLDE*
Ga0132257_1005489783	3300015373	Arabidopsis Rhizosphere	FAVSCIPMGEALMGTRENSIATWCKRFQIDLLKLRDRMKSGELTVFEKRADGKIDITPAAMVKLKELITQIEGALLDE*
Ga0132257_1009907912	3300015373	Arabidopsis Rhizosphere	ENSIATWCKRFQIDLWKLRDRMKAGELTVYEKRADGEVDITPAAMVKLKELITEIEGALLDE*
Ga0132257_1021940882	3300015373	Arabidopsis Rhizosphere	MREAVMGTRENSIATWCKRFQIDLWKLRDRMKAGELTIYEKRADGEVDITPAATVKLKELITEIETALLDE*
Ga0132257_1025285091	3300015373	Arabidopsis Rhizosphere	GPEAAMVTREHSIATWCKRFQIDLWQLRDRMKVGELTVYEKRAEGEVDITPAAMVKLKDLIAEIEGALLDE*
Ga0132255_1005757894	3300015374	Arabidopsis Rhizosphere	CKRFQIDLWKLSDRMKSGELTVYEKRADGKVDITPAAMVKLKEVITQIERALLDE*
Ga0132255_1042955651	3300015374	Arabidopsis Rhizosphere	HARRLMGTRENSIATWCKRFQIDLWKLHDHMKSGELTVFEKRADGKIDITPAAMVKLKELITQIEGALLDE*
Ga0132255_1050577891	3300015374	Arabidopsis Rhizosphere	MREAMMGTRENSIATWCKRFQIDLWKLRDRMKSGELTVYEKRADGKVDITPAAMVKLKELIT
Ga0163161_116390332	3300017792	Switchgrass Rhizosphere	MGTRENSIATWCKRFQIDLWKLSDRMKSGELTVYEKRADGQVDITPAAMVKLKELITQIEGALLDE
Ga0184625_101758653	3300018081	Groundwater Sediment	MGTRENSIATWCKRFQIDLGKLHDRMKSGELTVYEKRADGKVDITPAAMVKLKELITPIEGVLLDE
Ga0207710_104061701	3300025900	Switchgrass Rhizosphere	TWCKRFQIDLWKLLDRMKSGELAVYEKRADGKVDITPAAMVKLKELITQIEGALLDE
Ga0207688_107910561	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	ASAVSCKPKREAMMGTRENSIATWCKRFQIDLWKLSDRMKSGELTVYEKRADGKVDITPAAMVKLKELITQIEGALLDE
Ga0207662_103258483	3300025918	Switchgrass Rhizosphere	MGTRENSIATWCKRFQIDLLKLRDRMKSGELTVYEKRADGKVDITPAAMVKLKELITQIEGALLDE
Ga0207681_109946021	3300025923	Switchgrass Rhizosphere	MGTRENSIATWCKRLQIDLWKLRDRMKSGELTVYEKRADRKVDITPAAMVKLKELITQIEGALLDE
Ga0207690_111955162	3300025932	Corn Rhizosphere	MGTRENSIATWCKRFQIDLLKLRDRMKSGELTVYEKRADRKVDITPAAMVKLKELITQIEGALLDE
Ga0207709_111307612	3300025935	Miscanthus Rhizosphere	MGTRENSIATWCKRFQIDLLKLRDRMKSGELTVYEKRADHKVDITPAAMVKLKELITQIEGALLDE
Ga0207667_120375342	3300025949	Corn Rhizosphere	MGTRENSIATWCKRFQIDLLKLRDRMKSGELTVCEKRADHKVDITPAAMVKLKELITQIEGALLDE
Ga0207668_103358411	3300025972	Switchgrass Rhizosphere	MREAVMGTRENSIATWCKRFQIDLLKLRDRMKSGELTVYEKRADHKVDITPAAMVKLKELITQIEGALLDE
Ga0207640_109673172	3300025981	Corn Rhizosphere	HMREAVMGTRENSIATWCKRFQIDLWKLSDRMKSGELTVYEKRADGKVDITPAAMVKLKELITQIEGALLDE
Ga0207658_113980301	3300025986	Switchgrass Rhizosphere	MREAVMGTRENSIATWCKRFQIDLLKLRDRMKSGELTVYEKRADRKVDITPAAMVKLKELITQIEGALLDE
Ga0207677_121247921	3300026023	Miscanthus Rhizosphere	MREAVMGTRENSIATWCKRFQIDLWKLSDRMKSGELTVYEKRADGQVDITPAAMVKLKELITQIEGALLDE
Ga0207639_108547151	3300026041	Corn Rhizosphere	GVSFGRRPFCCIVHTMREAVMGTRENSIATWCKRFQIDLLKLRDRMKSGELTVYEKRADGKVDITPAAMVKLKELITQIEGALLDE
Ga0207708_111232721	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MREAVMGTRENSIATWCKRFQIDLWKLSDRMKSGELTVYEKRADGKVDITPAAMGKLKELITQIEGALLDE
Ga0307505_105658771	3300031455	Soil	MREAVMGTRENSIATWCKRFEIDLWKLHDRMKAGELTVYEKRADGEVDITPAAMVKLKQLITEIEGALLDE
Ga0310888_107339462	3300031538	Soil	MREAVMGTRENSIATWCKRFQIDLWKLSDRMKSGELTVYEKRADGKVDITPAAMVKLKELITQIEGALLDE
Ga0310907_104006271	3300031847	Soil	MGTRENSIATWCKRFQIDLWKLSDRMKSGELTVYEKRADGKVDITPAAMVKLKELIAQIEGALLDE
Ga0310900_104756662	3300031908	Soil	MGTRENSIATWCKRFQIDLWKLSDRMKSGELTVYEKRADGKVDITPAAMVKLKELITQIEGALLDE
Ga0310899_102878591	3300032017	Soil	MGTRENSIATWCKRFQIDLWKLHDHMKSGELTVLEKRADGKVDITPAAMVKLKELI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F105269

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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