NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F105325

Metagenome Family F105325

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105325
Family Type Metagenome
Number of Sequences 100
Average Sequence Length 42 residues
Representative Sequence MPTYLRRFYIQKASKFYEEEKKQYDKASKKKSGISRPGIPRG
Number of Associated Samples 90
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 60.00 %
% of genes near scaffold ends (potentially truncated) 39.00 %
% of genes from short scaffolds (< 2000 bps) 80.00 %
Associated GOLD sequencing projects 82
AlphaFold2 3D model prediction Yes
3D model pTM-score0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (76.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(48.000 % of family members)
Environment Ontology (ENVO) Unclassified
(89.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(90.000 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 40.00%    β-sheet: 0.00%    Coil/Unstructured: 60.00%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.37
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF04984Phage_sheath_1 4.00
PF06841Phage_T4_gp19 3.00
PF01434Peptidase_M41 1.00
PF01583APS_kinase 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG3497Phage tail sheath protein FIMobilome: prophages, transposons [X] 4.00
COG0465ATP-dependent Zn proteasesPosttranslational modification, protein turnover, chaperones [O] 1.00
COG0529Adenylylsulfate kinase or related kinaseInorganic ion transport and metabolism [P] 1.00

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A76.00 %
All OrganismsrootAll Organisms24.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000142|LPaug09P16500mDRAFT_c1044698Not Available649Open in IMG/M
3300000172|SI34jun09_200mDRAFT_c1038930Not Available901Open in IMG/M
3300000949|BBAY94_10056519Not Available1089Open in IMG/M
3300001740|JGI24656J20076_1032449Not Available561Open in IMG/M
3300002482|JGI25127J35165_1053251Not Available872Open in IMG/M
3300002483|JGI25132J35274_1001230All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium6774Open in IMG/M
3300002488|JGI25128J35275_1004543All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium3847Open in IMG/M
3300002518|JGI25134J35505_10014955Not Available2476Open in IMG/M
3300004109|Ga0008650_1017076Not Available2113Open in IMG/M
3300004111|Ga0008651_10049888All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1482Open in IMG/M
3300005400|Ga0066867_10196683Not Available739Open in IMG/M
3300005404|Ga0066856_10455497All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium546Open in IMG/M
3300005424|Ga0066826_10011048Not Available4003Open in IMG/M
3300005424|Ga0066826_10061899Not Available1410Open in IMG/M
3300005425|Ga0066859_10022910Not Available1915Open in IMG/M
3300005428|Ga0066863_10340438Not Available517Open in IMG/M
3300005430|Ga0066849_10300785All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium613Open in IMG/M
3300005594|Ga0066839_10285111Not Available571Open in IMG/M
3300005608|Ga0066840_10103197All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium594Open in IMG/M
3300005948|Ga0066380_10248401Not Available543Open in IMG/M
3300005969|Ga0066369_10056606Not Available1383Open in IMG/M
3300005971|Ga0066370_10235492All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium646Open in IMG/M
3300006002|Ga0066368_10187295All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium706Open in IMG/M
3300006002|Ga0066368_10236871Not Available620Open in IMG/M
3300006019|Ga0066375_10243509Not Available556Open in IMG/M
3300006076|Ga0081592_1172076All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium739Open in IMG/M
3300006091|Ga0082018_1105056All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium502Open in IMG/M
3300006339|Ga0068481_1038675Not Available755Open in IMG/M
3300006735|Ga0098038_1052167Not Available1475Open in IMG/M
3300006738|Ga0098035_1161140Not Available759Open in IMG/M
3300006754|Ga0098044_1179522All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium SCGC AAA027-F04839Open in IMG/M
3300006754|Ga0098044_1300423Not Available614Open in IMG/M
3300006902|Ga0066372_10564220All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium SCGC AAA027-F04675Open in IMG/M
3300006921|Ga0098060_1060054Not Available1111Open in IMG/M
3300006927|Ga0098034_1032274Not Available1577Open in IMG/M
3300006927|Ga0098034_1238569All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium503Open in IMG/M
3300006929|Ga0098036_1166356Not Available672Open in IMG/M
3300009706|Ga0115002_10439179All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium959Open in IMG/M
3300009790|Ga0115012_10562213Not Available899Open in IMG/M
3300010155|Ga0098047_10161577All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium865Open in IMG/M
3300010883|Ga0133547_10684466Not Available2034Open in IMG/M
3300012920|Ga0160423_10226447Not Available1298Open in IMG/M
3300012928|Ga0163110_10017109Not Available4194Open in IMG/M
3300012928|Ga0163110_10529807Not Available902Open in IMG/M
3300012928|Ga0163110_11020641Not Available659Open in IMG/M
3300012936|Ga0163109_10231065Not Available1356Open in IMG/M
3300012952|Ga0163180_10116096Not Available1731Open in IMG/M
3300012952|Ga0163180_10181903Not Available1422Open in IMG/M
3300017703|Ga0181367_1009456Not Available1794Open in IMG/M
3300017714|Ga0181412_1085644Not Available753Open in IMG/M
3300017738|Ga0181428_1081196Not Available756Open in IMG/M
3300017775|Ga0181432_1303046Not Available507Open in IMG/M
3300017951|Ga0181577_10349805Not Available950Open in IMG/M
3300018420|Ga0181563_10734882Not Available543Open in IMG/M
3300020297|Ga0211490_1074881Not Available569Open in IMG/M
3300020353|Ga0211613_1081979All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium757Open in IMG/M
3300020364|Ga0211538_1021171Not Available2215Open in IMG/M
3300020409|Ga0211472_10125876Not Available1018Open in IMG/M
3300020410|Ga0211699_10018293All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium2743Open in IMG/M
3300020411|Ga0211587_10110579Not Available1186Open in IMG/M
3300020417|Ga0211528_10331197All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium567Open in IMG/M
3300020436|Ga0211708_10005005Not Available4946Open in IMG/M
3300020436|Ga0211708_10025031All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED642267Open in IMG/M
3300020438|Ga0211576_10000536Not Available31402Open in IMG/M
3300020439|Ga0211558_10325071Not Available718Open in IMG/M
3300020441|Ga0211695_10178683Not Available742Open in IMG/M
3300020448|Ga0211638_10327750Not Available713Open in IMG/M
3300020450|Ga0211641_10523162All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium564Open in IMG/M
3300020457|Ga0211643_10045635Not Available2194Open in IMG/M
3300020468|Ga0211475_10229934Not Available924Open in IMG/M
3300020470|Ga0211543_10142178Not Available1207Open in IMG/M
3300021980|Ga0232637_10349024Not Available714Open in IMG/M
(restricted) 3300022902|Ga0233429_1052433Not Available1885Open in IMG/M
(restricted) 3300022931|Ga0233433_10118326Not Available1264Open in IMG/M
(restricted) 3300024256|Ga0233446_1021082Not Available2589Open in IMG/M
(restricted) 3300024260|Ga0233441_1035109Not Available2082Open in IMG/M
3300025084|Ga0208298_1000548Not Available15571Open in IMG/M
3300025099|Ga0208669_1041037Not Available1088Open in IMG/M
3300025114|Ga0208433_1036259Not Available1351Open in IMG/M
3300025114|Ga0208433_1115338Not Available656Open in IMG/M
3300025118|Ga0208790_1149868Not Available646Open in IMG/M
3300025128|Ga0208919_1076059Not Available1107Open in IMG/M
3300025132|Ga0209232_1104130Not Available954Open in IMG/M
3300025141|Ga0209756_1031537Not Available2838Open in IMG/M
3300025151|Ga0209645_1003933Not Available6699Open in IMG/M
3300025547|Ga0209556_1066610Not Available846Open in IMG/M
3300025873|Ga0209757_10046486All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1269Open in IMG/M
3300026079|Ga0208748_1092983Not Available762Open in IMG/M
3300026204|Ga0208521_1140689All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium618Open in IMG/M
3300026261|Ga0208524_1040936Not Available1377Open in IMG/M
3300027844|Ga0209501_10332237All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium922Open in IMG/M
3300028173|Ga0257118_1026787Not Available1633Open in IMG/M
3300028192|Ga0257107_1044891Not Available1373Open in IMG/M
3300028277|Ga0257116_1046672Not Available1305Open in IMG/M
3300028488|Ga0257113_1236039Not Available523Open in IMG/M
3300029448|Ga0183755_1001640All Organisms → cellular organisms → Archaea12505Open in IMG/M
3300031774|Ga0315331_10362552Not Available1063Open in IMG/M
3300032820|Ga0310342_100038419Not Available3929Open in IMG/M
3300032820|Ga0310342_102956420Not Available566Open in IMG/M
3300034695|Ga0372840_090364Not Available911Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine48.00%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine18.00%
Surface SeawaterEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater5.00%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater4.00%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine4.00%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater3.00%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater3.00%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater2.00%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine2.00%
MarineEnvironmental → Aquatic → Marine → Inlet → Unclassified → Marine2.00%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh2.00%
Deep OceanEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean1.00%
MarineEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Marine1.00%
MarineEnvironmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine1.00%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater1.00%
Hydrothermal Vent FluidsEnvironmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids1.00%
Diffuse Hydrothermal FluidsEnvironmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Fluids1.00%
Macroalgal SurfaceHost-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface1.00%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000142Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2009 P16 500mEnvironmentalOpen in IMG/M
3300000172Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 34 06/16/09 200mEnvironmentalOpen in IMG/M
3300000949Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY94Host-AssociatedOpen in IMG/M
3300001740Marine viral communities from the Deep Pacific Ocean - MSP-114EnvironmentalOpen in IMG/M
3300002482Marine viral communities from the Pacific Ocean - ETNP_2_30EnvironmentalOpen in IMG/M
3300002483Marine viral communities from the Pacific Ocean - ETNP_6_30EnvironmentalOpen in IMG/M
3300002488Marine viral communities from the Pacific Ocean - ETNP_2_60EnvironmentalOpen in IMG/M
3300002518Marine viral communities from the Pacific Ocean - ETNP_6_100EnvironmentalOpen in IMG/M
3300004109Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S2LV_150m_DNAEnvironmentalOpen in IMG/M
3300004111Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S2LV_200m_DNAEnvironmentalOpen in IMG/M
3300005400Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV261EnvironmentalOpen in IMG/M
3300005404Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV205EnvironmentalOpen in IMG/M
3300005424Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV49EnvironmentalOpen in IMG/M
3300005425Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV199EnvironmentalOpen in IMG/M
3300005428Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV253EnvironmentalOpen in IMG/M
3300005430Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV69EnvironmentalOpen in IMG/M
3300005594Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV82EnvironmentalOpen in IMG/M
3300005608Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302PF84AEnvironmentalOpen in IMG/M
3300005948Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_O2min_ad_571m_LVEnvironmentalOpen in IMG/M
3300005969Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_Bottom_ad_4513_LV_AEnvironmentalOpen in IMG/M
3300005971Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_SurfaceA_ad_5m_LV_AEnvironmentalOpen in IMG/M
3300006002Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_NADW_ad_2505m_LV_AEnvironmentalOpen in IMG/M
3300006019Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_NADW_ad_2500m_LV_AEnvironmentalOpen in IMG/M
3300006076Microbial communities in diffuse hydrothermal fluids of Manus Basin, Bismarck Sea ? fluid AEnvironmentalOpen in IMG/M
3300006091Marine microbial communities from the Eastern Tropical South Pacific Oxygen Minumum Zone, cruise NBP1315, 2013 - sample NBP125EnvironmentalOpen in IMG/M
3300006339Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_3_0500mEnvironmentalOpen in IMG/M
3300006735Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaGEnvironmentalOpen in IMG/M
3300006738Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaGEnvironmentalOpen in IMG/M
3300006754Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaGEnvironmentalOpen in IMG/M
3300006902Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_250_ad_251m_LV_AEnvironmentalOpen in IMG/M
3300006921Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaGEnvironmentalOpen in IMG/M
3300006927Marine viral communities from the Subarctic Pacific Ocean - 2_ETSP_OMZ_AT15125 metaGEnvironmentalOpen in IMG/M
3300006929Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaGEnvironmentalOpen in IMG/M
3300009706Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86EnvironmentalOpen in IMG/M
3300009790Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT10 MetagenomeEnvironmentalOpen in IMG/M
3300010155Marine viral communities from the Subarctic Pacific Ocean - 12_ETSP_OMZ_AT15267 metaGEnvironmentalOpen in IMG/M
3300010883western Arctic Ocean co-assemblyEnvironmentalOpen in IMG/M
3300012920Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaGEnvironmentalOpen in IMG/M
3300012928Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St17 metaGEnvironmentalOpen in IMG/M
3300012936Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St13 metaGEnvironmentalOpen in IMG/M
3300012952Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 4 MetagenomeEnvironmentalOpen in IMG/M
3300017703Marine viral communities from the Subarctic Pacific Ocean - ?Lowphox_02 viral metaGEnvironmentalOpen in IMG/M
3300017714Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 35 SPOT_SRF_2012-08-15EnvironmentalOpen in IMG/M
3300017738Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 51 SPOT_SRF_2014-02-12EnvironmentalOpen in IMG/M
3300017775Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17EnvironmentalOpen in IMG/M
3300017951Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018420Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300020297Marine microbial communities from Tara Oceans - TARA_B000000437 (ERX555970-ERR598979)EnvironmentalOpen in IMG/M
3300020353Marine microbial communities from Tara Oceans - TARA_B100000686 (ERX556093-ERR598998)EnvironmentalOpen in IMG/M
3300020364Marine microbial communities from Tara Oceans - TARA_B100000097 (ERX556021-ERR599037)EnvironmentalOpen in IMG/M
3300020409Marine microbial communities from Tara Oceans - TARA_A100001403 (ERX555912-ERR599106)EnvironmentalOpen in IMG/M
3300020410Marine microbial communities from Tara Oceans - TARA_B100000519 (ERX555959-ERR599148)EnvironmentalOpen in IMG/M
3300020411Marine microbial communities from Tara Oceans - TARA_B100000131 (ERX556098-ERR599130)EnvironmentalOpen in IMG/M
3300020417Marine microbial communities from Tara Oceans - TARA_B100000073 (ERX556034-ERR599082)EnvironmentalOpen in IMG/M
3300020436Marine microbial communities from Tara Oceans - TARA_B100000424 (ERX556009-ERR598984)EnvironmentalOpen in IMG/M
3300020438Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)EnvironmentalOpen in IMG/M
3300020439Marine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029)EnvironmentalOpen in IMG/M
3300020441Marine prokaryotic communities collected during Tara Oceans survey from station TARA_078 - TARA_B100000524 (ERX556088-ERR599006)EnvironmentalOpen in IMG/M
3300020448Marine microbial communities from Tara Oceans - TARA_B100000941 (ERX555919-ERR598954)EnvironmentalOpen in IMG/M
3300020450Marine microbial communities from Tara Oceans - TARA_B100000575 (ERX555933-ERR599077)EnvironmentalOpen in IMG/M
3300020457Marine microbial communities from Tara Oceans - TARA_B100001113 (ERX555941-ERR599014)EnvironmentalOpen in IMG/M
3300020468Marine microbial communities from Tara Oceans - TARA_A100000164 (ERX555914-ERR598993)EnvironmentalOpen in IMG/M
3300020470Marine microbial communities from Tara Oceans - TARA_B100000287 (ERX555976-ERR599053)EnvironmentalOpen in IMG/M
3300021980Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Burke_FS924 _150kmerEnvironmentalOpen in IMG/M
3300022902 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_135_MGEnvironmentalOpen in IMG/M
3300022931 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_100_MGEnvironmentalOpen in IMG/M
3300024256 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_120_MGEnvironmentalOpen in IMG/M
3300024260 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_135_MGEnvironmentalOpen in IMG/M
3300025084Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025099Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025114Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025118Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025128Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025132Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)EnvironmentalOpen in IMG/M
3300025141Marine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)EnvironmentalOpen in IMG/M
3300025151Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)EnvironmentalOpen in IMG/M
3300025547Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_150m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025873Marine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes)EnvironmentalOpen in IMG/M
3300026079Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_Bottom_ad_4513_LV_A (SPAdes)EnvironmentalOpen in IMG/M
3300026204Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV47 (SPAdes)EnvironmentalOpen in IMG/M
3300026261Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV61 (SPAdes)EnvironmentalOpen in IMG/M
3300027844Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134 (SPAdes)EnvironmentalOpen in IMG/M
3300028173Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_150mEnvironmentalOpen in IMG/M
3300028192Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_500mEnvironmentalOpen in IMG/M
3300028277Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_120mEnvironmentalOpen in IMG/M
3300028488Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_1320mEnvironmentalOpen in IMG/M
3300029448Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082EnvironmentalOpen in IMG/M
3300031774Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 34915EnvironmentalOpen in IMG/M
3300032820Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - S1503-DNA-20-500_MGEnvironmentalOpen in IMG/M
3300034695Seawater microbial communities from the Northeast subarctic Pacific Ocean - P26_June_2012_500mEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
LPaug09P16500mDRAFT_104469823300000142MarineMPTYLRRFYIQSAQKFYEEEKKQYDKSNKKSGGISRPGIPRG*
SI34jun09_200mDRAFT_103893033300000172MarineEVYNMPTYLRRFYIESASKFYEEEKKQYDKSNKKSGVSRPGIPRG*
BBAY94_1005651923300000949Macroalgal SurfaceMPTYLRRFYIAKASKFYDEEKKQMDKATKKAKGGGISRPGVTRGR*
JGI24656J20076_103244923300001740Deep OceanMPTYLRRFYIQSAAKFYEEEKKEYDKASKKKSGISRP
JGI25127J35165_105325123300002482MarineMPTYLRRYYITKASKFYEEEKKQMDKAQKKGGISRPGITRGR*
JGI25132J35274_100123063300002483MarineMPTYLRHFYIKKAQQYYDKEKEQYEKANKKSSSGISRPGITRGR*
JGI25128J35275_100454343300002488MarineMPTYLRHFYIKKAQQYYEKEKEQIDKANKKHSSGISRPGISRGG*
JGI25134J35505_1001495523300002518MarineMPTYLRRFYIESASKFYEEEKKEYDKSSKKKSGISRPGIPRG*
Ga0008650_101707633300004109MarineMPTYLRRFYIESASKFYEEEKKQYDKSNKKSGVSRPGIPRG*
Ga0008651_1004988823300004111MarineMPVYLRRFYIQSASEFYKEEKKEYEKSNKKSGISRPGIPRG*
Ga0066867_1019668333300005400MarineEVYNMPTYLRRFYIQSAAKFYEEEKKEYDKASKKKSGISRPGIPRG*
Ga0066856_1045549713300005404MarineMPTYLRRYYIQKASKYYEEEKKEMDKATKKKPSGISRPGISRGR*
Ga0066826_1001104813300005424MarineEVYNMPTYLRRFYIQSASKFYEEEKKQYDKASKKKSGISRPGIPRG*
Ga0066826_1006189913300005424MarineMPTYLRRFYIQSAAKFYEEEKKEYDKASKKKSGISRPGIPR
Ga0066859_1002291023300005425MarineMPTYLRRFYIQKASEFYEEEQKQIKKSNKKSGGISRPGIPRG*
Ga0066863_1034043823300005428MarineMPTYLRRFYIQSAAKFYEEEKKEYDKASKKKSGISRPGIPRG*
Ga0066849_1030078523300005430MarineMPTYLRRFYIQSASKFYENEKKEYDKANKKPSGLARPGIKRG*
Ga0066839_1028511113300005594MarineFTEVYNMPTYLRRFYIQSASKFYKDEKKEYDKSFKKKSGISRPGIPRG*
Ga0066840_1010319713300005608MarineMPVYLRQFYIKKAQQFYDSEKAQYEKANNKHSSGISRPGIQRGG*
Ga0066380_1024840123300005948MarineTYLRRFYIQSASKFYEEEKKQYDKANKKSSGISRPGIPRG*
Ga0066369_1005660623300005969MarineMPTYLRRFYIQAAAKFYEEEKKEYDKSSKKKSGGISRPGIPRG*
Ga0066370_1023549223300005971MarineMPTYLRRFYIKKAQEFYDNEKKEYDKANKKSSPGISRPGITRGR*
Ga0066368_1018729513300006002MarineMPTYLRRFYIKSASKFYEEEKKEYDKATKKKSGISRPGIPRG*
Ga0066368_1023687123300006002MarineMPTYLRRFYIQAAAKFYEEEKKEYDKSSKKKSGISRPGIPR
Ga0066375_1024350913300006019MarineMPTYLRRFYIQAAAKFYEEEKKEYDKSSKKKSGISRPGIPRR*
Ga0081592_117207623300006076Diffuse Hydrothermal FluidsMPTYLRRFYIQSASKFYEEEKKEYNKSSKKKSGVSRPGIPRG*
Ga0082018_110505623300006091MarineMPTYLRRFYIQSAQKFYEEEKKEYDKSSKKKSGISRPGIPRG*
Ga0068481_103867513300006339MarineMPTYLRRFYIQSAVKFYEEEKKEYNKSNKKSGITRPGIPRH*
Ga0098038_105216723300006735MarineMPTYLRRFYIQKASQFYKEEKAAYDKQGKKSSGISRPGISRG*
Ga0098035_116114033300006738MarineFTEVYNMPVYLRRFYIQKASEFYEEEQKQIKKSNKKSGGISRPGIPRG*
Ga0098044_117952223300006754MarineMPTYLRRFYIQSASKFYEEEQKEYKKSSKKKSGISRPGIPRG*
Ga0098044_130042323300006754MarineFNFTEVYNMPTYLRRFYIQSAAKFYEEEKKEYDKASKKKSGISRPGIPRG*
Ga0066372_1056422013300006902MarineMPTYLRRFYIQKASKFYEEEKKQYDKASKKKSGISRPGIPRG*
Ga0098060_106005433300006921MarineRFYIKKAQQFYDSEKEQYDKANKKQSPGISRPGVTRGR*
Ga0098034_103227433300006927MarineYLRRFYIQSAAKFYEEEKKEYDKASKKKSGISRPGIPRG*
Ga0098034_123856913300006927MarineMPVYLRRFYIQKASEFYEEEQKQIKKSNKKSGGISRPGIPRG*
Ga0098036_116635623300006929MarineMPTYLRHFYIKKAQQFYEKEKEQYDKANKKSSSGISRPGVSRGR*
Ga0115002_1043917933300009706MarineMPVYLRRFYTQSASEFYKEEKKEYDKSNKKSGGVSRPGIPRG*
Ga0115012_1056221323300009790MarineMPTYLRRFYIAKASSFYDEEKKQMDKATKKSKAGGLSRPGITRGR*
Ga0098047_1016157723300010155MarineMPVYLRRFYIQKASEFYEEEQKQIKKSNKKSGGISRPG
Ga0133547_1068446613300010883MarineMPTYLRRFYIQSASEFYKEEKKEYEKSNKKSGISRPGIPRG*
Ga0160423_1022644723300012920Surface SeawaterMPTYLRRFYIAKASKFYEEEKKEMDKATKKAKGGGISRPGVTRGR*
Ga0163110_1001710923300012928Surface SeawaterMPTYLRRFYIAKASSFYDEEKKQMDKATKKAKSGGISRPGVTRGR*
Ga0163110_1052980713300012928Surface SeawaterMPTYLRRFYIKKAQEHYDTEKKEYDKANKKSSPGISRPGITRGR*
Ga0163110_1102064113300012928Surface SeawaterNHTEVYEMPTYLRRYYIKKAEQFYKEEKKQMDKAQKKGGISRPGITRGR*
Ga0163109_1023106523300012936Surface SeawaterMPTYLRRFYIAKASSFYDEEKKQMDKATKKAKGGGISRPGVTRGR*
Ga0163180_1011609643300012952SeawaterMPTYLRRYYITKASKFYDKEKEQMDKATKKSKAGGLSRPGIPRGR*
Ga0163180_1018190323300012952SeawaterMPTYLRHFYIKKAQQYYEKEKEQIDKANKKPSGISRPGISRGG*
Ga0181367_100945633300017703MarineTYLRRFYIESASKFYEEEKKEYDKASKKKSGISRPGIPRG
Ga0181412_108564423300017714SeawaterMPTYLRRFYIQKASQFYKEEKAAYDKQGKKSSGISRPGI
Ga0181428_108119613300017738SeawaterMPTYLRRFYIQKASQFYKEEKAAYDKQGKKSSGISRP
Ga0181432_130304623300017775SeawaterLRRFYIQSASKFYEEEQKEYKKSSKKKSGISRPGIPRG
Ga0181577_1034980513300017951Salt MarshMPTYLRRFYIAKASKFYEEEKKEMDKATKKAKGGGISRPGVTRGR
Ga0181563_1073488223300018420Salt MarshMPTYLRRFYIAKASKFYDEEKKQMDKATKKAKGGGISRPGVTRGR
Ga0211490_107488133300020297MarineLRRYYITKASKHYEKEKEQMDKAQKKSKAGGISRPGITRGR
Ga0211613_108197923300020353MarineMPTYLRRFYIQSAQKFYDEEKKEYDKANKKQTGISRPGIKRG
Ga0211538_102117123300020364MarineMPTYLRRFYIQSAAKFYEEEKKEYDKASKKKSGISRPGIPRG
Ga0211472_1012587623300020409MarineMPTYLRRFYIAKASKFYDEEKKEMDKATKKAKGGGISRPGVTRGR
Ga0211699_1001829323300020410MarineMPTYLRRYYITKASKHYEKEKEQMDKAQKKSKAGGISRPGITRGR
Ga0211587_1011057923300020411MarineMPTYLRHFYIKKAQQYYEKEKEQIDKANKKPSGISRPGISRGG
Ga0211528_1033119723300020417MarineMPTYLRRFYIKKAQEHYDNEKKEYDKANKKSSPGISRPGITRGR
Ga0211708_1000500543300020436MarineMPTYLRRYYIQKASKFYEEEKKEMDKATKKKPSGISRPGISRGR
Ga0211708_1002503133300020436MarineTYLRRYYITKASKHYEKEKEQMDKAQKKSKAGGISRPGITRGR
Ga0211576_10000536153300020438MarineMPTYLRRFYIQKASQFYKEEKAAYDKQGKKSSGISRPGISRG
Ga0211558_1032507123300020439MarineMPTYLRRFYIKKAQEFYDNEKKEYDKANKKSSPGISRPGIT
Ga0211695_1017868323300020441MarineMPTYLRRYYITKASKHYEKEKEQMDKAQKKSKAGGLSRPGITRGR
Ga0211638_1032775033300020448MarineYLRRYYIQKASKFYEEEKKEMDKATKKKPSGISRPGISRGR
Ga0211641_1052316223300020450MarineMPTYLRHFYIKKAQQYYEKEKEQIDKANKKHSSGISRPGISRGG
Ga0211643_1004563533300020457MarineMPTYLRRYYIQKASEFYKEEKKEMDKAQKKNKGGISRPSISRGR
Ga0211475_1022993423300020468MarineMPTYLRRYYIKKAEQFYKEEKKQMDKAQKKGGVSRPGITRGR
Ga0211543_1014217833300020470MarineMPTYLRRFYIQSAQKFYDEEKKEYDKASKKQTGISRPGITRR
Ga0232637_1034902423300021980Hydrothermal Vent FluidsMPTYLRRYYIQKAAEFYEEEKKQYDKASKKKSGGISRPGIPRG
(restricted) Ga0233429_105243313300022902SeawaterYNMPIYLRRFYIQSASEFYKDEKKEYDKSNKKSGGVSRPGIPRG
(restricted) Ga0233433_1011832623300022931SeawaterMPTYLRRFYIQSASEFYKEEKKEYEKSNKKSGISRPGIPRG
(restricted) Ga0233446_102108253300024256SeawaterMPVYLRRFYIQSASEFYKEEKKEYEKSNKKSGISRPGIPRG
(restricted) Ga0233441_103510913300024260SeawaterYLRRFYIQSASEFYKEEKKQYDKSNKKSGVSRPGIPRG
Ga0208298_100054893300025084MarineMPTYLRRFYIESASKFYEEEKKEYDKSSKKKSGISRPGIPRG
Ga0208669_104103733300025099MarineRFYIKKAQQFYDSEKEQYDKANKKQSPGISRPGVTRGR
Ga0208433_103625913300025114MarineMPTYLRRFYIQSAAKFYEEEKKEYDKSSKKKSGISRPG
Ga0208433_111533833300025114MarineMPTYLRRFYIQSASKFYEEEQKEYKKSSKKKSGISRPGIPRG
Ga0208790_114986833300025118MarineTYLRRFYIQSASKFYEEEQKEYKKSSKKKSGISRPGIPRG
Ga0208919_107605923300025128MarineMPTYLRHFYIKKAQQFYEKEKEQYDKANKKSSSGISRPGVTRGR
Ga0209232_110413023300025132MarineMPTYLRRYYITKASKFYEEEKKQMDKAQKKGGISRPGITRGR
Ga0209756_103153733300025141MarineLRRFYIESASKFYEEEKKEYDKSSKKKSGISRPGIPRG
Ga0209645_100393353300025151MarineMPTYLRHFYIKKAQQYYDKEKEQYEKANKKSSSGISRPGITRGR
Ga0209556_106661033300025547MarineMPTYLRRFYIESASKFYEEEKKQYDKSNKKSGVSRPGIPRG
Ga0209757_1004648613300025873MarineMPTYLRRFYIQKASEFYEEEQKQIKKSNKKSGGIS
Ga0208748_109298323300026079MarineMPIYLRRFYIQKASKFYEEEKKEYDKASKKKSGISR
Ga0208521_114068913300026204MarineMPTYLRRFYIQSASKFYKDEKKEYDKSSKKKSGISRPGIP
Ga0208524_104093633300026261MarineRFYIQSAQKFYEEEKKEYDKSSKKKSGISRPGIPRG
Ga0209501_1033223733300027844MarineMPVYLRRFYTQSASEFYKEEKKEYDKSNKKSGGVSRPGIPRG
Ga0257118_102678713300028173MarineFTEVYNMPIYLRRFYIQSASEFYKDEKKEYDKSNKKSGGVSRPGIPRG
Ga0257107_104489133300028192MarineMPTYLRRFYIQSASKFYEEEKKEYDKSSKKKSGVSRPGIPQG
Ga0257116_104667213300028277MarineFTEVYNMPVYLRRFYIQSASEFYKEEKKEYEKSNKKSGISRPGIPRG
Ga0257113_123603923300028488MarineEVYNMPTYLRRFYIQSASKFYEEEKKQYDKASKKKSGVSRPGIPRG
Ga0183755_100164083300029448MarineMPTYLRRYYIKKAEQFYKEEKKQMDKAQKKGGISRPGVTRGR
Ga0315331_1036255233300031774SeawaterMPTYLRRFYIKKAQQFYDSEKEQYDKANKKQSAGISRPGVPRGR
Ga0310342_10003841943300032820SeawaterMPTYLRRFYIQSAAKFYEEEKKEYDKSNKKSGGISRPGIPRG
Ga0310342_10295642033300032820SeawaterPTYLRRFYIQSASKFYEEEQKEYKKSSKKKSGISRPGIPRG
Ga0372840_090364_613_7413300034695SeawaterMPTYLRRFYIQSAQKFYEEEKKQYDKSNKKSGGISRPGIPRG

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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