NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F105422

Metagenome Family F105422

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105422
Family Type Metagenome
Number of Sequences 100
Average Sequence Length 42 residues
Representative Sequence MEQSPSEANQQTLQLVKKFPAFMEPESPSPYPQVPATCPYPE
Number of Associated Samples 12
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 2.00 %
% of genes from short scaffolds (< 2000 bps) 2.00 %
Associated GOLD sequencing projects 10
AlphaFold2 3D model prediction Yes
3D model pTM-score0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (100.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut
(100.000 % of family members)
Environment Ontology (ENVO) Unclassified
(100.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Animal → Animal proximal gut
(100.000 % of family members)


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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Fibrous Signal Peptide: No Secondary Structure distribution: α-helix: 24.29%    β-sheet: 0.00%    Coil/Unstructured: 75.71%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.35
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF13412HTH_24 1.00


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Phylogeny

NCBI Taxonomy

NameRankTaxonomyDistribution
UnclassifiedrootN/A100.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002238|JGI20169J29049_10534615Not Available512Open in IMG/M
3300002308|JGI20171J29575_12194533Not Available880Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Termite GutHost-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut100.00%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001345Nasutitermes corniger P4 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P4Host-AssociatedOpen in IMG/M
3300002238Nasutitermes corniger P1 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P1Host-AssociatedOpen in IMG/M
3300002308Nasutitermes corniger P4 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P4Host-AssociatedOpen in IMG/M
3300002501Neocapritermes taracua P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Nt197 P1Host-AssociatedOpen in IMG/M
3300002504Neocapritermes taracua P4 segment gut microbial communities from Petit-Saut dam, French Guiana - Nt197 P4Host-AssociatedOpen in IMG/M
3300006045Neocapritermes taracua P3 segment gut microbial communities from Petit-Saut dam, French Guiana - Nt197 P3Host-AssociatedOpen in IMG/M
3300006226Microcerotermes parvus P3 segment gut microbial communities from Pointe-Noire, Republic of the Congo - Th196 P3Host-AssociatedOpen in IMG/M
3300027539Nasutitermes corniger midgut segment microbial community from laboratory colony in Florida, USA - Nc150M (SPAdes)Host-AssociatedOpen in IMG/M
3300027670Nasutitermes corniger crop gut microbial community from laboratory colony in Florida, USA - Nc150C (SPAdes)Host-AssociatedOpen in IMG/M
3300027966Nasutitermes corniger P5 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P5 (SPAdes)Host-AssociatedOpen in IMG/M
3300028325Nasutitermes corniger P1 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P1 (SPAdes)Host-AssociatedOpen in IMG/M
3300028327Nasutitermes corniger P3 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P3 (SPAdes)Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI20171J14444_105290113300001345Termite GutMEQSPS*EANQQTSQLVKKFPAFMEPESPSLYPQVQATCP
JGI20169J29049_1053461513300002238Termite GutMEQSPSWEANQETLQLVKKFPAFMEPESPSQYPQVPATCPYPE
JGI20169J29049_1057669523300002238Termite GutMEQSPS*EANQSTLQLVKKFPAFMKPESPSPYPQVPATCPYPEP
JGI20169J29049_1057962813300002238Termite GutMEQSPS*ETNQQTLQLVKKFPAFMEPESSSPYPQVPATCP
JGI20169J29049_1058693313300002238Termite GutMEQSPS*EANQ*TLQLVKKFPAFMESESPSPYPQVPATCPYPEPT
JGI20169J29049_1059499413300002238Termite GutMEESPS*EANQ*TLQLVKKFPAFMEPESSSPYPQVPATSPYPEP
JGI20169J29049_1065994413300002238Termite GutMEQSPS*EANQSTLQLVKKFPAFMEPESPSPYPQVPA
JGI20169J29049_1071918313300002238Termite GutMEQSPS*EANQQTLQLVKKFPAFMEPESPSPYPQVLATCPYPEPT
JGI20169J29049_1072002213300002238Termite GutMEQSPS*EANQYSLQLVKKFPAFMEPESPSPYPQVTATCPYPEPT
JGI20169J29049_1072354213300002238Termite GutMEQSPS*ESNQKTLQLVKKFPAFMEPESPSPYPQVSATCPYPE
JGI20169J29049_1077001613300002238Termite GutMEQSPS*EANQYTLQLVKKFPAFIEPESSSPYPQV
JGI20169J29049_1077475913300002238Termite GutMEQSHS*KETLQLVKKFPAFMEPESPSPYPQVPATCPYPE
JGI20169J29049_1078371613300002238Termite GutMEQSPS*KANQQTLQLVKKFPAFMEPESPSPYPQVSATCPYPE
JGI20169J29049_1082554413300002238Termite GutMEQRPS*EANQETLQLVKKFPAFMEPESPSPYPQVP
JGI20169J29049_1085351923300002238Termite GutMEQSPS*EASQQTLQLVKKFPAFMEPESPSPYPQVPATCPYP
JGI20169J29049_1093082813300002238Termite GutMEQSPS*EANQSTLQLVKKFPAFMQPESPSPYPQVPATCPYPEP
JGI20169J29049_1093293423300002238Termite GutMEQSPS*EANQQTLQLVKKFPAFMEPESPSPYPQVPATCPYPE
JGI20169J29049_1099544233300002238Termite GutMEQSPS*EANQKTLQLVKKFPTFMEPESPSPYPQVPATCPYPEPT
JGI20169J29049_1120253543300002238Termite GutMEQSPS*EANK*TLQLVKKFPAFMEPESSSPYPQVPVTCPYPEP
JGI20169J29049_1131127213300002238Termite GutMEQGPS*EANQ*TLQLVKKFPAFMEPESPSPYPQVPATCPYPKP
JGI20169J29049_1131587913300002238Termite GutMEQSPS*EANQSTLQLVKKFPAFMEPESSSPYPQVPATCPYPEP
JGI20169J29049_1136729733300002238Termite GutMEQSLS*EANQLTLQLVKKFPAFMEPESPAPYPQVPATCPYPE
JGI20171J29575_1156228613300002308Termite GutMEQSPS*EANQSTLQLIKKFPAFMEPESPALYPQVPATCPY
JGI20171J29575_1157173913300002308Termite GutMEQSPS*EANQSTLQLVKKFPAFMKPESPSPYPQVPATCPY
JGI20171J29575_1162076213300002308Termite GutMEQSPS*EANQ*TLQLVKKFPAFMESESPSPYPQVPATCPYP
JGI20171J29575_1167698313300002308Termite GutMLADYLLTYSMEQVLLEKLTSKTLQLVKKFPAFMEPESPSPYPQVPATCPY
JGI20171J29575_1168768113300002308Termite GutMEQSPSLEANQGTSQEISAFMEPESPSPYPQVPATCPYPEP
JGI20171J29575_1172602213300002308Termite GutMEQSPS*EANQSPLQLVKKFPAFMEPESPSPYPQVPATCPY
JGI20171J29575_1173650013300002308Termite GutMEQSPS*EANQYSLQLVKKFPAFMEPESPSPYPQVTATCPYP
JGI20171J29575_1184852813300002308Termite GutMEQSPS*EANQHTLQLVKKFPAFMEPESPSPYPQVPATCPY
JGI20171J29575_1193592823300002308Termite GutMEQSPSSEANQYTLQLVKKFPAFMETRRSLTYPQVPATCPYPE
JGI20171J29575_1201736013300002308Termite GutMEQSPS*EANK*TLQLVKKFPAFMEPESSSPYPQVPVTCPY
JGI20171J29575_1216274813300002308Termite GutMEQSPS*EANQQTLHLVKKFPAFTEPESPSPYPQVPATCPYPEP
JGI20171J29575_1219453333300002308Termite GutMEQSPSGEANFASSQEIPAFMEPESPSPYPQVPATCPYSEP
JGI20171J29575_1228596013300002308Termite GutMEQNPS*EANQLTLQLVNKFPAFMEPESPSPYPQVSATCPY
JGI20171J29575_1230354113300002308Termite GutMEQGPS*EANQ*TLQLVKKFPAFMEPESPSPYPQVPATCPY
JGI20171J29575_1232556413300002308Termite GutMEQSPS*EANQSNLQLVKKFPAFMEPESPAPYPQVPATCPYP
JGI20171J29575_1233516513300002308Termite GutMEQSPSREANQQTLQLVKKFPAFMEPESPLPYPQVPATCPYPEPT
JGI20171J29575_1247060213300002308Termite GutVEQSPS*EANQ*TLQLAKKFPAFMEPESPSPYPQVPATCPY
JGI20171J29575_1248436423300002308Termite GutMEQSPS*EANQSTLQLVKKFPAFMEPESSSPYPQVPATCPY
JGI24703J35330_1073029513300002501Termite GutMEQSPS*EAIQQTLQLVKKFPAFMEPESSSPYLQVTAIRPYPE
JGI24703J35330_1076152913300002501Termite GutMEQSPS*EANQ*TLPLVKKFPAFMEPESSSPYPQVPATRPYPEP
JGI24703J35330_1080564513300002501Termite GutMNPS*EANQQPLPLVKKFPAFMEPESSSPYPKVPATRPYPEP
JGI24703J35330_1087795113300002501Termite GutMEQSPS*ETNQSTLPLVKKFPAFMEPESSSPYPQVPATRP
JGI24703J35330_1114569013300002501Termite GutMEQSPS*EANRQTLQLVKKFPAFMEPESSSPYPQVTAIRPYPE
JGI24703J35330_1120970013300002501Termite GutMEQNPS*EANQYTLPLVKKFPAFMEPESSSPHPQVPATRPYLEP
JGI24703J35330_1129051513300002501Termite GutMEQSPS*EANQ*TLQLVKKFPAFMETESSSPYPQVPATRPYPEP
JGI24703J35330_1129429113300002501Termite GutMEQSPS*EANQETLPLVKKFSAFMEPESSSPYPQVPATRPYPE
JGI24703J35330_1132628313300002501Termite GutMKQSPS*EANQQTLQLVKKFPAFMEPESSSPYAQVTAIRPYPEP
JGI24703J35330_1141041913300002501Termite GutMEQSPS*EANQQTLPLVKKFPAFMEPESSSPYPQVPAIRPYPE
JGI24703J35330_1143275913300002501Termite GutMEQSPS*EANQQTLQLVKKFPAFMEPESSSPYPQVSATRPCPEPTPSSPHDPL
JGI24703J35330_1147108623300002501Termite GutMEQSPS*EANQQNLQLVKKFPAFMESESSSPYPQVTAIRPYPEPTPSS
JGI24703J35330_1155846433300002501Termite GutMEQSPS*EANQETLQLVKKFPAFMEPESSSPYPQVTAIRPYPE
JGI24703J35330_1156026213300002501Termite GutMEQSLS*EANQQTLSLVKKFPAFMEPESSSPYPQVPATRTYP
JGI24703J35330_1156321823300002501Termite GutMEQGPS*EANQQTLQLVKKFPAIMEPESSSPYPQVPATRPYPEPTPS
JGI24703J35330_1160449913300002501Termite GutMEQSPS*EANRLTLLLVKKFPAFMEPESSSPYPKVPATRPYPEPTPS
JGI24703J35330_1172309043300002501Termite GutMEQNPS*EANQYTLPLVKKFPAFMEPESSSPYPQVTAICPYPEPTPSSP
JGI24705J35276_1139556213300002504Termite GutMEQGPS*EANQQTLQLVKKFPAIMEPESSSPYPQVPATRPYPEP
JGI24705J35276_1159783813300002504Termite GutMEQSPS*EANQSTLTLVKKFPAFMEPESSSPYPQVPATRPY
JGI24705J35276_1169162133300002504Termite GutMEQNPS*EANQYTLPLVKKFPAFMELESSSPYPQVPATRPY
JGI24705J35276_1210589723300002504Termite GutMEQSPS*EANQQTLPLVKKFLAFMEPESSSPYPQVPATRPY
JGI24705J35276_1219103613300002504Termite GutMEQSPS*EANQETLPLVKKFPAFMEPESSSQYPQVPAIRLY
Ga0082212_1054020813300006045Termite GutMEQSPS*EANQQTLPLVKKFLAFMEPESSSPYPQVPATRPYPGPTSLLPIEI
Ga0082212_1062589813300006045Termite GutMEQRPS*EANQLTLPLVKKFPAFIEPESSSPYPQMPTTRPY
Ga0082212_1138039613300006045Termite GutMEQSPS*EANQLTLQLVKKFPAFMEPESSSPYPQVTA
Ga0099364_1032425913300006226Termite GutMEQSPS*KANWFLQLIKKFPAFLEPEGSSPYTQVPATCPYPEPPP
Ga0209424_100231713300027539Termite GutMEQSPSSEANQYTLQLVKKFPAFMETRRSLTYPQVP
Ga0209424_103287313300027539Termite GutMEQSPSXEANQQTLQLVKKFPAFMEPESPSPYPQVPATCPY
Ga0209424_129774513300027539Termite GutMEQSPSXEANQHTLQLVKKFPAFMEPESPSPYPQVPATCP
Ga0209423_1001129113300027670Termite GutMTGGTDITYSMEQSPSXEANQNTLQLVKKFPAFMKPESPSSYPQVSATCP
Ga0209423_1011150113300027670Termite GutMKQSPSXEVNQKTLQLVKKFPAFMEPESPSPYPQVPATCPYPEP
Ga0209423_1012298713300027670Termite GutMFLITYSMEHSPSXEANQQTLQLVKKFPAFMEPESPSPYPQVPAT
Ga0209423_1014500213300027670Termite GutMEQSPSXEANQXTLQLVKKFPAFMEPESPSPYPQVPA
Ga0209423_1016106413300027670Termite GutMEQSPSXEANQSNLQLVKKFPAFMEPESPAPYPQVPAT
Ga0209423_1022139513300027670Termite GutMEQSPSXEANQQTLQLVKKFPAFMGPESPSPYPQVPATCPYPEP
Ga0209423_1023120013300027670Termite GutMEQSPSXESNQKTLQLVKKFPAFMELESPSPYPQVPATCSYPEPT
Ga0209423_1039791413300027670Termite GutMEQSPSXKANQQTLQLVKKFPAFMEPESPSPYPQVSATCPYPEP
Ga0209423_1050734313300027670Termite GutMEQSPSXEANQQTLQLVKKFPAFMGPESPSPYPQVPATCPYPEPT
Ga0209423_1053403713300027670Termite GutMEQSPSXEANQSPLQLVKKFPAFMEPESPSPYPQVPA
Ga0209738_1013971913300027966Termite GutMEQSPSXEANQQTLQLVKKFPAFMKPESSSPYPQVPATCPYPEP
Ga0209738_1018457323300027966Termite GutMEQSPSXEANQETLQLVKKFPAFMEPESPSPYPQVPAT
Ga0209738_1024164413300027966Termite GutMEQSPSXEANQYTLQLVKKFPAFMEPESPSPYPQVPATCPYP
Ga0209738_1030046113300027966Termite GutMEQSPSXEANQGTLQLVKKFPAFMEPESPSPYPQVPATC
Ga0209738_1037424513300027966Termite GutMEQSPSXEANQSTLQLVKKFTVFMEPESPSPYPQVS
Ga0209738_1045770413300027966Termite GutMEQSHSXKETLQLVKKFPAFMEPESPSPYPQVPAT
Ga0209738_1055220413300027966Termite GutMEQSPSXEANQQTLQLVKKFPAFMEPESPSPYPQVPATCPYPQP
Ga0209738_1058014113300027966Termite GutMEQRPSXEANQETLQLVKKFPAFMEPESPSPYPQVPA
Ga0209738_1059767913300027966Termite GutMEQSPSWEANQETLQLVKKFPAFMEPESPSQYPQVPATCPYPEP
Ga0209738_1061172413300027966Termite GutMEESPSXEANHXTLQLVKKYPAFMEPESSSPYPQVPATCPYP
Ga0268261_1014671733300028325Termite GutMEQSPSXEAKQYTLQLVKKFPAFMEPASSSPYPQVPATCPYPEPTPSS
Ga0268261_1034854913300028325Termite GutMEQSPSXEANQSTLQLVKKFPAFMEPESPSPYPQVPATCP
Ga0268261_1039743313300028325Termite GutMEQSPSXEANQQTLQLVKKFPAFMEPESPSPYPQVPAT
Ga0268261_1046255813300028325Termite GutMQQSPSXEANQYSLQVVKKFPAFMEPESSSPYPQVPATCPYPEPTPSSFHDPLQ
Ga0268261_1054794313300028325Termite GutMEQSPSXEANQHTLQLVKKFPAFMEPESPSPYPQVPATCPYPEP
Ga0268261_1056583913300028325Termite GutMEQSPSXEANQSTLQLVKKFPAFMEPESPSPYPQVPATC
Ga0268261_1059171613300028325Termite GutMEQSPSXEANQLTLQLVKKFPAFMEPESSSPYPQVPATCPYPEP
Ga0268261_1061326123300028325Termite GutMEQSPAXEANQLTLQLVKKFPAFMEPESPSPYPQVPATCPYPEP
Ga0268261_1070924113300028325Termite GutMEQSPSXEANQLTLQLVKKFPAFMEPESPSPYPQVPATCSYPEPTPSSSHDPLQ
Ga0268261_1074775523300028325Termite GutMEQSPSXEANQQTLQLVKKLPAFMGPESPSPYPQV
Ga0268262_1030938213300028327Termite GutMEQSPSXEANQYTLQLVKKFPAFMEPESPSPYPQVSATCPYP

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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