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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F105468 |
| Family Type | Metagenome |
| Number of Sequences | 100 |
| Average Sequence Length | 53 residues |
| Representative Sequence | ERENRELKERLAELYLEVDHLKKLGDWLRRHKSVSTSVITAESLARLPKGSKS |
| Number of Associated Samples | 95 |
| Number of Associated Scaffolds | 100 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | No |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 3.00 % |
| % of genes near scaffold ends (potentially truncated) | 95.00 % |
| % of genes from short scaffolds (< 2000 bps) | 98.00 % |
| Associated GOLD sequencing projects | 88 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.46 |
| Hidden Markov Model |
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| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (72.000 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (11.000 % of family members) |
| Environment Ontology (ENVO) | Unclassified (36.000 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (32.000 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 43.21% β-sheet: 0.00% Coil/Unstructured: 56.79% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.46 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 100 Family Scaffolds |
|---|---|---|
| PF13276 | HTH_21 | 58.00 |
| PF13683 | rve_3 | 32.00 |
| PF01609 | DDE_Tnp_1 | 1.00 |
| PF07724 | AAA_2 | 1.00 |
| PF00012 | HSP70 | 1.00 |
| PF01797 | Y1_Tnp | 1.00 |
| PF01527 | HTH_Tnp_1 | 1.00 |
| PF08352 | oligo_HPY | 1.00 |
| COG ID | Name | Functional Category | % Frequency in 100 Family Scaffolds |
|---|---|---|---|
| COG0443 | Molecular chaperone DnaK (HSP70) | Posttranslational modification, protein turnover, chaperones [O] | 1.00 |
| COG1943 | REP element-mobilizing transposase RayT | Mobilome: prophages, transposons [X] | 1.00 |
| COG3039 | Transposase and inactivated derivatives, IS5 family | Mobilome: prophages, transposons [X] | 1.00 |
| COG3293 | Transposase | Mobilome: prophages, transposons [X] | 1.00 |
| COG3385 | IS4 transposase InsG | Mobilome: prophages, transposons [X] | 1.00 |
| COG5421 | Transposase | Mobilome: prophages, transposons [X] | 1.00 |
| COG5433 | Predicted transposase YbfD/YdcC associated with H repeats | Mobilome: prophages, transposons [X] | 1.00 |
| COG5659 | SRSO17 transposase | Mobilome: prophages, transposons [X] | 1.00 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 72.00 % |
| All Organisms | root | All Organisms | 28.00 % |
| Visualization |
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| Powered by ApexCharts |
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| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 11.00% |
| Natural And Restored Wetlands | Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands | 7.00% |
| Soil | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil | 7.00% |
| Groundwater Sediment | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment | 6.00% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil | 6.00% |
| Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 6.00% |
| Switchgrass Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere | 4.00% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 3.00% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil | 3.00% |
| Natural And Restored Wetlands | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands | 3.00% |
| Deep Subsurface Sediment | Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment | 3.00% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere | 3.00% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere | 3.00% |
| Freshwater Sediment | Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment | 2.00% |
| Sediment (Intertidal) | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) | 2.00% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 2.00% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil | 2.00% |
| Agricultural Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil | 2.00% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil | 2.00% |
| Corn Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere | 2.00% |
| Soil | Environmental → Terrestrial → Soil → Loam → Unclassified → Soil | 2.00% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 2.00% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 2.00% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere | 2.00% |
| Groundwater Sediment | Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment | 1.00% |
| Sediment | Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment | 1.00% |
| Mangrove Sediment | Environmental → Aquatic → Marine → Wetlands → Sediment → Mangrove Sediment | 1.00% |
| Watersheds | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds | 1.00% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 1.00% |
| Unplanted Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil | 1.00% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 1.00% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 1.00% |
| Sediment | Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment | 1.00% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere | 1.00% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere | 1.00% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 1.00% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere | 1.00% |
| Visualization |
|---|
| Powered by ApexCharts |
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 2209111006 | Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Wild type Col-0 | Host-Associated | Open in IMG/M |
| 2228664021 | Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil | Environmental | Open in IMG/M |
| 3300000787 | Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil | Environmental | Open in IMG/M |
| 3300000789 | Soil microbial communities from Great Prairies - Iowa, Native Prairie soil | Environmental | Open in IMG/M |
| 3300003997 | Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D1 | Environmental | Open in IMG/M |
| 3300004019 | Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleB_D2 | Environmental | Open in IMG/M |
| 3300004022 | Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D1 | Environmental | Open in IMG/M |
| 3300004156 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1 | Environmental | Open in IMG/M |
| 3300005159 | Soil and rhizosphere microbial communities from Laval, Canada - mgLPB | Environmental | Open in IMG/M |
| 3300005277 | Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Wild type Col-0 | Host-Associated | Open in IMG/M |
| 3300005329 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG | Environmental | Open in IMG/M |
| 3300005331 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG | Host-Associated | Open in IMG/M |
| 3300005333 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG | Host-Associated | Open in IMG/M |
| 3300005334 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 | Host-Associated | Open in IMG/M |
| 3300005340 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG | Environmental | Open in IMG/M |
| 3300005444 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG | Environmental | Open in IMG/M |
| 3300005455 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG | Host-Associated | Open in IMG/M |
| 3300005563 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 | Host-Associated | Open in IMG/M |
| 3300005833 | Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.174_CBK | Environmental | Open in IMG/M |
| 3300005836 | Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB | Environmental | Open in IMG/M |
| 3300005841 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 | Host-Associated | Open in IMG/M |
| 3300006057 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012 | Environmental | Open in IMG/M |
| 3300006196 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 | Host-Associated | Open in IMG/M |
| 3300006845 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 | Host-Associated | Open in IMG/M |
| 3300006846 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 | Host-Associated | Open in IMG/M |
| 3300006854 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4 | Host-Associated | Open in IMG/M |
| 3300006954 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control | Environmental | Open in IMG/M |
| 3300007076 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 | Host-Associated | Open in IMG/M |
| 3300009053 | Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 19-21cm March2015 | Environmental | Open in IMG/M |
| 3300009506 | Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_8 | Environmental | Open in IMG/M |
| 3300009609 | Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890 | Environmental | Open in IMG/M |
| 3300010375 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG | Host-Associated | Open in IMG/M |
| 3300011395 | Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT200_2 | Environmental | Open in IMG/M |
| 3300012039 | Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT534_2 | Environmental | Open in IMG/M |
| 3300012113 | Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT100_2 | Environmental | Open in IMG/M |
| 3300012137 | Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT560_2 | Environmental | Open in IMG/M |
| 3300012152 | Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT590_2 | Environmental | Open in IMG/M |
| 3300012199 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG | Environmental | Open in IMG/M |
| 3300012350 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG | Environmental | Open in IMG/M |
| 3300012479 | Unplanted soil (control) microbial communities from North Carolina - M.Soil.1.yng.030610 | Environmental | Open in IMG/M |
| 3300012891 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S148-409B-2 | Environmental | Open in IMG/M |
| 3300012910 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2 | Environmental | Open in IMG/M |
| 3300012984 | Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG | Environmental | Open in IMG/M |
| 3300013096 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 | Environmental | Open in IMG/M |
| 3300013297 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG | Host-Associated | Open in IMG/M |
| 3300014270 | Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailA_D1 | Environmental | Open in IMG/M |
| 3300014300 | Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D1 | Environmental | Open in IMG/M |
| 3300014873 | Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT200B_16_10D | Environmental | Open in IMG/M |
| 3300015371 | Combined assembly of cpr5 and col0 rhizosphere and soil | Host-Associated | Open in IMG/M |
| 3300018031 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1 | Environmental | Open in IMG/M |
| 3300018056 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1 | Environmental | Open in IMG/M |
| 3300018061 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1 | Environmental | Open in IMG/M |
| 3300018076 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex | Environmental | Open in IMG/M |
| 3300018084 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1 | Environmental | Open in IMG/M |
| 3300019866 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1m1 | Environmental | Open in IMG/M |
| 3300020002 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1 | Environmental | Open in IMG/M |
| 3300021064 | Subsurface sediment microbial communities from Mancos shale, Colorado, United States - Mancos B2 | Environmental | Open in IMG/M |
| 3300021081 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redo | Environmental | Open in IMG/M |
| 3300024241 | Subsurface microbial communities from Mancos shale, Colorado, United States - Mancos A_50_July_PB | Environmental | Open in IMG/M |
| 3300025326 | Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_2 (SPAdes) | Environmental | Open in IMG/M |
| 3300025327 | Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_1 (SPAdes) | Environmental | Open in IMG/M |
| 3300025535 | Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D1 (SPAdes) | Environmental | Open in IMG/M |
| 3300025537 | Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D1 (SPAdes) | Environmental | Open in IMG/M |
| 3300025795 | Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleA_D2 (SPAdes) | Environmental | Open in IMG/M |
| 3300025911 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025918 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025920 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025921 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025923 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025931 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025936 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025971 | Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqC_D2 (SPAdes) | Environmental | Open in IMG/M |
| 3300026033 | Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_CattailNLA_D1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027075 | Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT160D0 HiSeq | Environmental | Open in IMG/M |
| 3300027481 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05.2A2-12 (SPAdes) | Environmental | Open in IMG/M |
| 3300027680 | Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 80 (SPAdes) | Environmental | Open in IMG/M |
| 3300027703 | Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes) | Environmental | Open in IMG/M |
| 3300027955 | Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm May2015 (SPAdes) | Environmental | Open in IMG/M |
| 3300028381 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300028578 | Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT160D0 | Environmental | Open in IMG/M |
| 3300028597 | Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14 | Environmental | Open in IMG/M |
| 3300028715 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203 | Environmental | Open in IMG/M |
| 3300028802 | Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S | Environmental | Open in IMG/M |
| 3300028889 | Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2 | Environmental | Open in IMG/M |
| 3300031199 | Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 7_S | Environmental | Open in IMG/M |
| 3300031538 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1 | Environmental | Open in IMG/M |
| 3300031716 | Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3 | Environmental | Open in IMG/M |
| 3300031820 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515 | Environmental | Open in IMG/M |
| 3300031847 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4 | Environmental | Open in IMG/M |
| 3300031944 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1 | Environmental | Open in IMG/M |
| 3300032144 | Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soil | Environmental | Open in IMG/M |
| 3300032179 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2 | Environmental | Open in IMG/M |
| 3300032256 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_top | Environmental | Open in IMG/M |
| 3300033407 | Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT140D175 | Environmental | Open in IMG/M |
| 3300034151 | Sediment microbial communities from East River floodplain, Colorado, United States - 2_s17 | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
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| Protein ID | Sample Taxon ID | Habitat | Sequence |
| 2214001941 | 2209111006 | Arabidopsis Rhizosphere | ELKEKLAELYLENTQLKKLGDWLRQRRSVSTSVISAQSLARSPKDSKS |
| ICCgaii200_10402641 | 2228664021 | Soil | LQAAPSVREKFLERENRELKEKLAELYLENDHLKKLGDWLRQRKSVTTSVITAESLARLPKGSKS |
| JGI11643J11755_116009321 | 3300000787 | Soil | LELSPSVREKALERENRELKEKLAELYLENDHLKKLGDWLRRHKSGTTSVVTAENLARSPKGSKS* |
| JGI1027J11758_125689651 | 3300000789 | Soil | EKLAELYLENDHLKKLGDWLRQRKSVXTSVITAESLARLPKGSKS* |
| Ga0055466_101810442 | 3300003997 | Natural And Restored Wetlands | GGVLIHSPSVREQLLERDSRELKERLAELYLEVDHLKKLGDWLRRHKSVSPSVITAESLARLPKGPKS* |
| Ga0055439_100943572 | 3300004019 | Natural And Restored Wetlands | AELYLEVDHLKKLGDWLRRHKSVSTSVITAESLARLPKGSKS* |
| Ga0055432_100915573 | 3300004022 | Natural And Restored Wetlands | ENRELKEKLAELYLENAQLKKLWDWLRQRKSVTTSVITAQSLVRLPKDSKS* |
| Ga0062589_1003865102 | 3300004156 | Soil | LYLENEHLKKLGDWLRRHKSASTSVITAENLPRLPKGSRS* |
| Ga0066808_10090342 | 3300005159 | Soil | KEKLAELYLENDHLKKLGDWLRQRKSVTTSVITAESLARLPKGSKS* |
| Ga0065716_10071521 | 3300005277 | Arabidopsis Rhizosphere | LERENRELKEKLAELYLENGQLKKLGDWLRQRRSVSTSVISAQSLARSPKDSKS* |
| Ga0070683_1002445501 | 3300005329 | Corn Rhizosphere | EKLAELYLENTQLKKLGDWLRQRKSATTSVITAQNLARSPKDSKS* |
| Ga0070670_1002022031 | 3300005331 | Switchgrass Rhizosphere | LERENRELKERLAELYLEVDHLKKLGDWLRRHKNGTTSVITAESLARLPKGSKS* |
| Ga0070677_108097261 | 3300005333 | Miscanthus Rhizosphere | APLARERVLERENRELKERLAELYLEVDHLKKLGDWLRRHKNGTTSVITAQSLARLPKGSKS* |
| Ga0068869_1003672492 | 3300005334 | Miscanthus Rhizosphere | PSARERVLERENRELKERLAELYLEVDHLKKLGDWLRRHKNGTTSVITAESLARLPKGSKS* |
| Ga0070689_1003004431 | 3300005340 | Switchgrass Rhizosphere | RENRALKEKLAELYLENEHLKKLGDWLRRHKSASTSVITAENLPRLPKGSRS* |
| Ga0070689_1018551681 | 3300005340 | Switchgrass Rhizosphere | LKEKLAELYLENNHLKKLGDWLRRHKSVSTSVITAENSARLPKGPKS* |
| Ga0070694_1003454581 | 3300005444 | Corn, Switchgrass And Miscanthus Rhizosphere | ERVLERENRELKERLAELYLEVDHLKKLGDWLRRHKNGTTSVITAESLARLPKGSKS* |
| Ga0070663_1002471923 | 3300005455 | Corn Rhizosphere | RVLERENRELKERLAELYLEVDHLKKLGDWLRRHKNGTTSVITAESLARLPKGSKS* |
| Ga0068855_1015505481 | 3300005563 | Corn Rhizosphere | RELKEKLAELYLENGQLKKLGDLLRQRRSVSTSVITAQSLARSPKDSKS* |
| Ga0074472_104320361 | 3300005833 | Sediment (Intertidal) | LKEKLVELYLENGHLKKLGDWLRRHKSGTTSVITAESLARLPKGPKS* |
| Ga0074470_1142234414 | 3300005836 | Sediment (Intertidal) | LERENRELKEKLAELYLENSQLKKLGDWLRQRKGVSTSVITAQSFARRPKDSKS* |
| Ga0068863_1015146382 | 3300005841 | Switchgrass Rhizosphere | GLERENRALKEKLAELYLENEHLKKLGDWLRRHKSASTSVITAENLPRLPKGSRS* |
| Ga0075026_1001656594 | 3300006057 | Watersheds | LLERENRELKERLAELYLEVDHLKKLGDWLRRHKSVSTSVITAESLARLPKGPKL* |
| Ga0075422_100834592 | 3300006196 | Populus Rhizosphere | LERENRELKEKLAELYLENTQLKKLGDWLRQRKSATTSVITAQNLARSPKDSKS* |
| Ga0075421_1020589902 | 3300006845 | Populus Rhizosphere | ELYLENAQLKKLGDWLRQRRSVSTSVITAQSLARSPKDSKS* |
| Ga0075421_1026287311 | 3300006845 | Populus Rhizosphere | REKLLERENRELKERLAELYLEVEHLKKLGDWLRRHKSVTTSVITAQSLTRLPKGPKS* |
| Ga0075430_1012220751 | 3300006846 | Populus Rhizosphere | LYLENAQLKKLGDWLRQRRSVSTSVITAQSLARLPSDSKS* |
| Ga0075425_1031738061 | 3300006854 | Populus Rhizosphere | ELKEGLAELYLEVEHLKKLGDWLRRHKSVTTSVITAQSLTRLPKGPKS* |
| Ga0079219_104650261 | 3300006954 | Agricultural Soil | TLAELYLENTQLKKLGDWLRQRKNVTTSVITAQSLARLPKDSKS* |
| Ga0079219_114326522 | 3300006954 | Agricultural Soil | REKFLERENRELKEKLAELYLENGQLKKLGDWLRQRRTVSTSVITAQSLARSAKDSKS* |
| Ga0075435_1009759921 | 3300007076 | Populus Rhizosphere | NRELKEKLAELYLENTQLKKLGDWLRQRKSATTSVITAQNLARSPKDSKS* |
| Ga0105095_105291491 | 3300009053 | Freshwater Sediment | LKEKLAELYLENAQLKKLGDWLRRHKSVSTSVITAESLARLPKGSKS* |
| Ga0118657_117143982 | 3300009506 | Mangrove Sediment | ELKEQLAELYLENEHLKKLGDWLRRHRSVNTSVITAESLPRLPKGSKS* |
| Ga0105347_14713702 | 3300009609 | Soil | EKLAELYLENSHLKKLGDWLRHHKSVSTSVITAENLARSPKGSKS* |
| Ga0105239_126028442 | 3300010375 | Corn Rhizosphere | ETPPSVREKFLERENRELKEKLAELYLENGQLKKLGDLLRQRRSVSTSVITAQSLARSPKDSKS* |
| Ga0137315_10123161 | 3300011395 | Soil | ERENRELKERLAELYLEVDHLKKLGDWLRRHKSVSTSVITAESLARLPKGSKS* |
| Ga0137421_10541181 | 3300012039 | Soil | SAPSARERLLERENRELKERLAELYLEVDHLKKLGDWLRRHKNGTTSVITAESLARLAKGSKS* |
| Ga0137328_10117682 | 3300012113 | Soil | ASPSIREKALERENRELKEKLAELYLENSQLKKLGDWLRRHTSVSTSVITAASLARLPKGSKS* |
| Ga0137346_10434103 | 3300012137 | Soil | ERENRELKEKLAELYLENDHLKKIGDWLRRHKNGTTSVITAESLARLPKGSKS* |
| Ga0137347_10835052 | 3300012152 | Soil | ELYLEVDHLKKLGDWLRRHKSVSTSVITAESLARLSKGPKS* |
| Ga0137383_110540222 | 3300012199 | Vadose Zone Soil | EKFLEQENRELKEKLAELYLEVDHLKKLGDWLRRHKSVSTSVITAESLTRLPKGPKS* |
| Ga0137372_109392981 | 3300012350 | Vadose Zone Soil | AELYLEVDHLKKLGDWLRRHKSVSTSVITAESLTRLPKGPKS* |
| Ga0157348_10233342 | 3300012479 | Unplanted Soil | SPSVREKALERENRELKEKLAELYLENTQLKKLGNWLRQRRSVSTSVITVQSLARSPKDSKS* |
| Ga0157305_101121303 | 3300012891 | Soil | SPSVREKALERENRELKEKLAELYLENTQLKKLGDWLRQRRSVSTSVITAQSLAQLPKDSKS* |
| Ga0157308_103081592 | 3300012910 | Soil | ENRELKERLAELYLEVDHLKKLGDWLRRHKNGTTSVITAESLARLPKGSKS* |
| Ga0164309_104512762 | 3300012984 | Soil | ERENRELKEKLAELYLENDHLKKLGDWLRQRKSVTTSVITAESLARLPKGSKS* |
| Ga0157307_10274171 | 3300013096 | Soil | ARERVLERENRELKERLAELYLEVDHLKKLGDWLRRHKNGTTSVITAESLARLPKGSKS* |
| Ga0157378_105856702 | 3300013297 | Miscanthus Rhizosphere | ERLLEGENRELKEKLAELYLENNHLKKLGDWLRRHKSVSTSVITAENSARLPKGPKS* |
| Ga0075325_10320473 | 3300014270 | Natural And Restored Wetlands | REKALERENRELKEKLAELYLENAQLKKLGDWLRRRKSVSTSVVTAESLTRLPKGSKS* |
| Ga0075321_10146552 | 3300014300 | Natural And Restored Wetlands | PPSVREKALERENRELKEKLAELYLENAQLKKLGDWLRRRRSVSTSVITAQSLARSPKDSKS* |
| Ga0180066_10277642 | 3300014873 | Soil | LLERENRELKERLAELYLEVDHLKKLGDWLRRHKSVSTSVITAESLARLSKGPKS* |
| Ga0132258_129625622 | 3300015371 | Arabidopsis Rhizosphere | RELKEKLAELYLENTQLKKLGDWLRQRKNATISVITAQNLARSPKDSKS* |
| Ga0184634_102737262 | 3300018031 | Groundwater Sediment | ELYLENDHLKKLGDWLRQRKSVNTSVITAESLARLPKGSKS |
| Ga0184623_102742092 | 3300018056 | Groundwater Sediment | PSARERLLERENRELKERLAELYLEVDHLKKLGDWLRRHKSVSTSVITAQSLARLPKGSK |
| Ga0184619_103364022 | 3300018061 | Groundwater Sediment | MLERENRELKERLAELYLEVDHLKKLGDGLRRHKNGTTAVITAESLARLPKGSKS |
| Ga0184609_100030018 | 3300018076 | Groundwater Sediment | EKFLEQENRELKEKLAGLYLEVDHLKKLGDWLRRHKSVSTSVITVQSLTRLPKGSKS |
| Ga0184629_100998192 | 3300018084 | Groundwater Sediment | ERENRELKEKLAELYLENAQLKKLGDWLRRHKNVSTSVITDQNLARSPKDSKS |
| Ga0184629_107208731 | 3300018084 | Groundwater Sediment | ERENRELKEKLAELYLENAQLKKLGDWLRRHKNVSTSVITAQNLARSPKDSKS |
| Ga0193756_10174632 | 3300019866 | Soil | ELYLEVDHLKKLGDWLRRHKNGTTSVITAESLARLPKGSK |
| Ga0193730_11211692 | 3300020002 | Soil | VREKALERENRELKEKLAELYLENRHLKKLEDWLRQRKNVNISVITAQNLARPLKDSKS |
| Ga0206225_10329161 | 3300021064 | Deep Subsurface Sediment | ERENRELKERLAELYLEVDHLKKLGGWLRRHKSVSTSVITAESLARLPKGSKS |
| Ga0206225_10534282 | 3300021064 | Deep Subsurface Sediment | LLERENRELKERLAELYLEVDHLKKLGDWLRRHKSVSTSVITAESLARLSKGPKS |
| Ga0210379_100993631 | 3300021081 | Groundwater Sediment | GHERLLERENRELKERLAELYLEVDHLKKLGGWLRRHKSVSTSVITAESLARLPKGSRS |
| Ga0233392_10046751 | 3300024241 | Deep Subsurface Sediment | ERLAELYLEVDHLKKLGDWLRRHKSVSTSVITAESLARLPKGPKS |
| Ga0209342_107913102 | 3300025326 | Soil | EATASVREKFLERENRELKERLAELYLEVDHLKKLGDWLRRHKNGTTSVITAESLARLPKGSKS |
| Ga0209751_103904463 | 3300025327 | Soil | KFLERENRELKERLAELYLEVDHLKKLGDWLRRHKNGTTSVITAESLARLPKGSKS |
| Ga0207423_10885131 | 3300025535 | Natural And Restored Wetlands | RENRELKEKLAELYLENAQLKKLWDWLRQRKSVTTSVITAQSLVRLPKDSKS |
| Ga0210061_10883431 | 3300025537 | Natural And Restored Wetlands | STAGGVLIHSPSVREQLLERDSRELKERLAELYLEVDHLKKLGDWLRRHKSVSPSVITAESLARLPKGPKS |
| Ga0210114_10895412 | 3300025795 | Natural And Restored Wetlands | SARERLLERENRELKERLAELYLENDHLKKLGDWLRRHKSVSTSVITAENLARLPKGSKS |
| Ga0207654_108062241 | 3300025911 | Corn Rhizosphere | EKLAELYLENEHLKKLGDWLRRHKSASTSVITAENLPRLPKGSRS |
| Ga0207662_103150111 | 3300025918 | Switchgrass Rhizosphere | ARERVLERENRELKERLAELYLEVDHLKKLGDWLRRHKNGTTSVITAESLARLPKGSKS |
| Ga0207649_105470542 | 3300025920 | Corn Rhizosphere | ENRELKERLAELYLEVDHLKKLGDWLRRHKNGTTSVITAESLARLPKGSKS |
| Ga0207652_106745422 | 3300025921 | Corn Rhizosphere | NRALKEKLAELYLENEHLKKLGDWLRRHKSASTSVITAENLPRLPKGSRS |
| Ga0207681_106050292 | 3300025923 | Switchgrass Rhizosphere | LYLENAQLKKLGVWLRQRRSVTTSVITAQSLARLPKDSKS |
| Ga0207644_107037971 | 3300025931 | Switchgrass Rhizosphere | ENRELKERLAELYLEVDHLKKLGDWLRRHKNGTTSVITAESLPRLPKGSKS |
| Ga0207670_103933961 | 3300025936 | Switchgrass Rhizosphere | LERENRALKEKLAELYLENEHLKKLGDWLRRHKSASTSVITAENLPRLPKGSRS |
| Ga0210102_10642082 | 3300025971 | Natural And Restored Wetlands | ENREIEEKLADLYLENSQLKKLGALLRRHKSVNTSVITAESLARSPKGSKS |
| Ga0208652_10122641 | 3300026033 | Natural And Restored Wetlands | ETTPSVREKTLERENRELKEKLAELYLENAQLKKLGDWLRRRRNASTSVITAQSLTRSPKDSKS |
| Ga0214467_10257321 | 3300027075 | Soil | KEKLAELYIENRHLKKLEDWLRQRKNVSTSVITAESLPRLPKGSKS |
| Ga0207459_1070841 | 3300027481 | Soil | YLEVDHLKKLGDWLRRHKNGTTSVITAESLARLPKGSKS |
| Ga0207826_10547662 | 3300027680 | Tropical Forest Soil | SIRERGLERENRELKEKLAELYLENEHLKKLGDWLRRRKSASTCVITAESLPRLPKGSKS |
| Ga0207862_10636942 | 3300027703 | Tropical Forest Soil | NRELKEKLAELYLENEHLKKLGDWLRRRKSASTCVITAESLPRLPKGSKS |
| Ga0209078_10864092 | 3300027955 | Freshwater Sediment | KERLAELYLEVDHLKKLGDWLRRRKSVSTSVITAESLARLPKGSKS |
| Ga0268264_101745841 | 3300028381 | Switchgrass Rhizosphere | APLARERVLERENRELKERLAELYLEVDHLKKLGDWLRRHKNGTTSVITAESLPRLPKGSKS |
| Ga0272482_102530652 | 3300028578 | Soil | LAELYLENAQLKKLGDWLRQRRSVSTSVITAQSLARLPKDSKS |
| Ga0247820_106180782 | 3300028597 | Soil | DLKEKLAELYLENAQLKKLGDWLRQRRSVSTSVITAQSLARLPKDSKS |
| Ga0307313_100732271 | 3300028715 | Soil | RENRELKERLAELYLEVDHLKKLGDWLRRHKNGTTSVITAESLARLPKGSK |
| Ga0307503_105691311 | 3300028802 | Soil | LENAQLKKLGDWLRRRKSASTSVITAQSLTRSPKDSKS |
| Ga0247827_103748542 | 3300028889 | Soil | REKFLERENRELKEKLAELYLENGQLKKLGDLLRQRRSVSTSVITAQSLARLPKDSKS |
| Ga0307495_100679851 | 3300031199 | Soil | LKEKLAELYLENDHLKKLGDWLRQRKSVTTSVITAESLARLPKGSKS |
| Ga0310888_105421812 | 3300031538 | Soil | TPSVREKTLERENRELKEKLAELYLENAQLKKLGDWLRRRKSASTSVITAQSLTRSPKDSKS |
| Ga0310813_101742213 | 3300031716 | Soil | LERENRQLKEKLAELYLENGQLKKLGDWLRQRRSVSTSVISAQSLARSPKDSKS |
| Ga0307473_105220261 | 3300031820 | Hardwood Forest Soil | LERENRELKEKLAELYLENDHLKKLGDWLRQRKSVTTSVITAESLARLPKGSKS |
| Ga0310907_103242871 | 3300031847 | Soil | ENRDLKEKLAELYLENAQLKKLGDWLRQRRSVSTSVITAQSLARSPSDSKS |
| Ga0310884_102355372 | 3300031944 | Soil | RERLLEGENRELKEKLAELYLENNHLKKLGDWLRRHKSVSTSVITAENSARLPKGPKS |
| Ga0315910_106856922 | 3300032144 | Soil | NRELKEKLAELYLENTQLKKLGDWLRRRKSVSTSVITAESLARLPKGSKS |
| Ga0310889_106596431 | 3300032179 | Soil | ENRELKEKLAELYLENAQLKKLGDWLRQKRNASTSVITAQSLTRSPKDSKS |
| Ga0315271_118544921 | 3300032256 | Sediment | ELKERLAELYLEVDHLKKIGDWLRRHKNETTSVITAQSLTRLPKGPKS |
| Ga0214472_113176552 | 3300033407 | Soil | TASVREKFLERENRELKERLAELYLEVDHLKKLGDWLRRHKNGTTSVITAESLARLSKGSKS |
| Ga0364935_0185535_501_665 | 3300034151 | Sediment | LERENRELKEKLAELYLENDHLKKLGDWLRQHKSVNTSVITAESLARLPKGSKS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |