NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F105495

Metagenome / Metatranscriptome Family F105495

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105495
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 59 residues
Representative Sequence MHQPREPRAIVGPSGDTVRPVLKTVRLGNEIRVEAHYTDPRTGQFITKIPVSVTKVDDK
Number of Associated Samples 80
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 62.50 %
% of genes near scaffold ends (potentially truncated) 7.00 %
% of genes from short scaffolds (< 2000 bps) 16.00 %
Associated GOLD sequencing projects 72
AlphaFold2 3D model prediction Yes
3D model pTM-score0.67

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (79.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(51.000 % of family members)
Environment Ontology (ENVO) Unclassified
(82.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(77.000 % of family members)


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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 35.63%    Coil/Unstructured: 64.37%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.67
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF027395_3_exonuc_N 27.00
PF04321RmlD_sub_bind 6.00
PF16363GDP_Man_Dehyd 5.00
PF01807zf-CHC2 3.00
PF01370Epimerase 2.00
PF03796DnaB_C 1.00
PF00801PKD 1.00
PF03237Terminase_6N 1.00
PF01368DHH 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG02585'-3' exonuclease Xni/ExoIX (flap endonuclease)Replication, recombination and repair [L] 27.00
COG0451Nucleoside-diphosphate-sugar epimeraseCell wall/membrane/envelope biogenesis [M] 12.00
COG0702Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domainsGeneral function prediction only [R] 12.00
COG1086NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsCCell wall/membrane/envelope biogenesis [M] 12.00
COG1087UDP-glucose 4-epimeraseCell wall/membrane/envelope biogenesis [M] 6.00
COG1088dTDP-D-glucose 4,6-dehydrataseCell wall/membrane/envelope biogenesis [M] 6.00
COG1089GDP-D-mannose dehydrataseCell wall/membrane/envelope biogenesis [M] 6.00
COG1090NAD dependent epimerase/dehydratase family enzymeGeneral function prediction only [R] 6.00
COG1091dTDP-4-dehydrorhamnose reductaseCell wall/membrane/envelope biogenesis [M] 6.00
COG0358DNA primase (bacterial type)Replication, recombination and repair [L] 3.00
COG0305Replicative DNA helicaseReplication, recombination and repair [L] 1.00
COG1066DNA repair protein RadA/Sms, contains AAA+ ATPase domainReplication, recombination and repair [L] 1.00

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A79.00 %
All OrganismsrootAll Organisms21.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000148|SI47jul10_100mDRAFT_c1002454All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon4612Open in IMG/M
3300001450|JGI24006J15134_10000566Not Available22767Open in IMG/M
3300001450|JGI24006J15134_10002268All Organisms → cellular organisms → Bacteria10719Open in IMG/M
3300002518|JGI25134J35505_10005943All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium4390Open in IMG/M
3300005239|Ga0073579_1322376All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium862Open in IMG/M
3300005595|Ga0066833_10028225All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium1647Open in IMG/M
3300006735|Ga0098038_1110003Not Available944Open in IMG/M
3300006737|Ga0098037_1144303Not Available802Open in IMG/M
3300006751|Ga0098040_1014545All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium2641Open in IMG/M
3300006752|Ga0098048_1104340Not Available856Open in IMG/M
3300006793|Ga0098055_1246092All Organisms → cellular organisms → Bacteria673Open in IMG/M
3300007758|Ga0105668_1157711All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium958Open in IMG/M
3300009481|Ga0114932_10012246All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon6427Open in IMG/M
3300009481|Ga0114932_10538999Not Available685Open in IMG/M
3300009481|Ga0114932_10635995All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium623Open in IMG/M
3300009790|Ga0115012_10004223Not Available8539Open in IMG/M
3300017764|Ga0181385_1120004Not Available803Open in IMG/M
3300017773|Ga0181386_1115201Not Available833Open in IMG/M
3300020410|Ga0211699_10006781All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon4887Open in IMG/M
3300020457|Ga0211643_10359277Not Available715Open in IMG/M
3300022227|Ga0187827_10028963All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon4848Open in IMG/M
3300025066|Ga0208012_1001233All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon7170Open in IMG/M
3300025072|Ga0208920_1000382All Organisms → cellular organisms → Bacteria11785Open in IMG/M
3300025072|Ga0208920_1004453All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon3320Open in IMG/M
3300025096|Ga0208011_1011642All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium2419Open in IMG/M
3300025168|Ga0209337_1000093All Organisms → cellular organisms → Archaea75055Open in IMG/M
3300025168|Ga0209337_1009677All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium6164Open in IMG/M
3300025267|Ga0208179_1054843Not Available885Open in IMG/M
3300025274|Ga0208183_1104857All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium514Open in IMG/M
3300027779|Ga0209709_10013386All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium5727Open in IMG/M
3300028192|Ga0257107_1173495All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium623Open in IMG/M
3300031773|Ga0315332_10218469Not Available1237Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine51.00%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater13.00%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface8.00%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine7.00%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater4.00%
Deep OceanEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean3.00%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine2.00%
Background SeawaterEnvironmental → Aquatic → Marine → Oceanic → Aphotic Zone → Background Seawater2.00%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine2.00%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine2.00%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater1.00%
Surface SeawaterEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater1.00%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater1.00%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh1.00%
EstuarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Estuarine1.00%
Marine SedimentEnvironmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment1.00%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000148Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 47 07/07/10 100mEnvironmentalOpen in IMG/M
3300001450Marine viral communities from the Pacific Ocean - LP-53EnvironmentalOpen in IMG/M
3300002231Marine sediment microbial communities from Santorini caldera mats, Greece - red matEnvironmentalOpen in IMG/M
3300002483Marine viral communities from the Pacific Ocean - ETNP_6_30EnvironmentalOpen in IMG/M
3300002518Marine viral communities from the Pacific Ocean - ETNP_6_100EnvironmentalOpen in IMG/M
3300003477Estuarine microbial communities from the Sarno estuary, Gulf of Naples, Italy - Sample Station 3EnvironmentalOpen in IMG/M
3300005239Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of MaineEnvironmentalOpen in IMG/M
3300005400Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV261EnvironmentalOpen in IMG/M
3300005427Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV65EnvironmentalOpen in IMG/M
3300005595Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF47BEnvironmentalOpen in IMG/M
3300005597Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF51BEnvironmentalOpen in IMG/M
3300005603Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV61EnvironmentalOpen in IMG/M
3300006191Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNAEnvironmentalOpen in IMG/M
3300006735Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaGEnvironmentalOpen in IMG/M
3300006736Marine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaGEnvironmentalOpen in IMG/M
3300006737Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaGEnvironmentalOpen in IMG/M
3300006751Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaGEnvironmentalOpen in IMG/M
3300006752Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaGEnvironmentalOpen in IMG/M
3300006754Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaGEnvironmentalOpen in IMG/M
3300006789Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaGEnvironmentalOpen in IMG/M
3300006793Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaGEnvironmentalOpen in IMG/M
3300006902Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_250_ad_251m_LV_AEnvironmentalOpen in IMG/M
3300006928Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaGEnvironmentalOpen in IMG/M
3300006929Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaGEnvironmentalOpen in IMG/M
3300006990Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaGEnvironmentalOpen in IMG/M
3300007758Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample CTDPlume_2015_DNA CLC_assemblyEnvironmentalOpen in IMG/M
3300008219Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_b05EnvironmentalOpen in IMG/M
3300009008Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 267m, 250-2.7umEnvironmentalOpen in IMG/M
3300009173Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134EnvironmentalOpen in IMG/M
3300009370Combined Assembly of Gp0127930, Gp0127931EnvironmentalOpen in IMG/M
3300009425Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136EnvironmentalOpen in IMG/M
3300009481Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaGEnvironmentalOpen in IMG/M
3300009703Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV12_W25 metaGEnvironmentalOpen in IMG/M
3300009706Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86EnvironmentalOpen in IMG/M
3300009786Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126EnvironmentalOpen in IMG/M
3300009790Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT10 MetagenomeEnvironmentalOpen in IMG/M
3300010148Marine viral communities from the Subarctic Pacific Ocean - 9B_ETSP_OMZ_AT15188_CsCl metaGEnvironmentalOpen in IMG/M
3300010153Marine viral communities from the Subarctic Pacific Ocean - 20_ETSP_OMZ_AT15318 metaGEnvironmentalOpen in IMG/M
3300012920Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaGEnvironmentalOpen in IMG/M
3300017703Marine viral communities from the Subarctic Pacific Ocean - ?Lowphox_02 viral metaGEnvironmentalOpen in IMG/M
3300017764Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 8 SPOT_SRF_2010-02-11EnvironmentalOpen in IMG/M
3300017773Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 9 SPOT_SRF_2010-03-24EnvironmentalOpen in IMG/M
3300017775Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17EnvironmentalOpen in IMG/M
3300018428Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101404AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300020410Marine microbial communities from Tara Oceans - TARA_B100000519 (ERX555959-ERR599148)EnvironmentalOpen in IMG/M
3300020438Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)EnvironmentalOpen in IMG/M
3300020457Marine microbial communities from Tara Oceans - TARA_B100001113 (ERX555941-ERR599014)EnvironmentalOpen in IMG/M
3300020470Marine microbial communities from Tara Oceans - TARA_B100000287 (ERX555976-ERR599053)EnvironmentalOpen in IMG/M
3300021087Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 80m 12015EnvironmentalOpen in IMG/M
3300021089Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 12015EnvironmentalOpen in IMG/M
3300022227Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014_SV_150_PacBio MetaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300022933 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_100_MGEnvironmentalOpen in IMG/M
3300025066Marine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025072Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025096Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025102Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025103Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025108Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025110Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025122Marine viral communities from the Pacific Ocean - ETNP_2_300 (SPAdes)EnvironmentalOpen in IMG/M
3300025151Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)EnvironmentalOpen in IMG/M
3300025168Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)EnvironmentalOpen in IMG/M
3300025267Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar (SPAdes)EnvironmentalOpen in IMG/M
3300025274Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_51 (SPAdes)EnvironmentalOpen in IMG/M
3300025770Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_165m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025873Marine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes)EnvironmentalOpen in IMG/M
3300026205Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302PF89A (SPAdes)EnvironmentalOpen in IMG/M
3300027685Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - Bottom_A/KNORR_S2/LV (SPAdes)EnvironmentalOpen in IMG/M
3300027714Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA (SPAdes)EnvironmentalOpen in IMG/M
3300027779Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)EnvironmentalOpen in IMG/M
3300027838Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)EnvironmentalOpen in IMG/M
3300028192Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_500mEnvironmentalOpen in IMG/M
3300031757Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 32315EnvironmentalOpen in IMG/M
3300031773Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 34915EnvironmentalOpen in IMG/M
3300031774Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 34915EnvironmentalOpen in IMG/M
3300031775Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 32315EnvironmentalOpen in IMG/M
3300032032Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 32315EnvironmentalOpen in IMG/M
3300032073Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416EnvironmentalOpen in IMG/M
3300032132Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - ASW #5EnvironmentalOpen in IMG/M
3300032360Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 34915EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
SI47jul10_100mDRAFT_100245483300000148MarineMHQPKEPRAIVGPSGDTARPVLKTVRMGNEVRVEAHYTDPRTGQFITKIPVSVTKVDDK*
JGI24006J15134_10000566213300001450MarineMHVPTQPRAIVAPSGETARPVIKNVRVGDEIRVEAHYTDPKTGQFITKIPVSVTKVDD*
JGI24006J15134_10002268143300001450MarineMHQHQPREPRAIVGPNGVTVRPVLKTVKVGNEVRVEAHYTDPTTGQFITKIPVSVDKVDDK*
KVRMV2_10054680623300002231Marine SedimentMHVPTQPRPILAPSGETARPVIKNVRVGNEIRVEAHYTDPKTGQFITKIPVSVTKVDD*
JGI25132J35274_104464323300002483MarineMRNPNQPRNIIGPSGATVRPTIREIRVGDEIRTEAHYTDPRTGQFITKIPVSVRKVDDK*
JGI25134J35505_1000594383300002518MarineMHLPRVPRAIVGPSGDTVRPVIKNITIGGEIRVEAHYTDPRTGQFITKIPISVTKIDDK*
nap3_1013581913300003477EstuarineTVRPQIRETRVGNEIRVEAHYTCPSTGRFITKIVVETRKVDAGPGNTR*
Ga0073579_132237623300005239MarineMHQPKEPRAIVGPSGDTARPVLKTVRIGNEVRVEAHYTDPRTGQFITKIPVSVTKVDDK*
Ga0066867_1012547223300005400MarineMHLPKVPRAIVGPSGDTVRPVIKNITIDGEIRVEAHYTDPRTGQFITKIPISVTKIDDK*
Ga0066851_1008223723300005427MarineHLPKVPRAIVGPSGDTVRPVMKNITIGGEVRVEAHYTDPRTGQFITKIPISVTKIDDK*
Ga0066833_1002822523300005595MarineMHLPRVPRAIVGPSGDTVRPVIKNITIDGEIRVEAHYTDPRTGQFITKIPISVTKIDDK*
Ga0066832_1001391923300005597MarineMHLPRVPRAIVGPSGDTVRPVMKNITIDGEVRVEAHYTDPRTGQFITKIPISVTKIDDK*
Ga0066853_1001869533300005603MarineMHLPKVPRAIVGPSGDTVRPVMKNITIGGEIRVEAHYTDPRTGQFITKIPISVTKIDDK*
Ga0075447_1028527323300006191MarineTRLYKMHQPREPRAIVGPSGDTVRPVLKTVRLGNEVRVEAHYTDPRTGQFITKIPVSVTKVDDK*
Ga0098038_101283523300006735MarineMHTPKQPRSIIAPSGGTARPVIREVRVGNEVRTEAHYTDPRTGQFITKIPISVRKIDDK*
Ga0098038_111000323300006735MarineMHTPNQLRSIVAPSGGTARPVIREVRVGNEIRTEAHYTDPNTGRFITKIPVSVRKIDDK*
Ga0098038_118643623300006735MarineMHKPNQLRSITAPSGGTARPIVKEVRIGDEIRTEAHYTDPRTGQFITKIPISVRKVDDK*
Ga0098033_100191373300006736MarineMHLPRVPRAIVGPSGDTVRPVIKNITIDGEFRVEAHYTDPRTGQFITKIPISVTKIDDK*
Ga0098037_114430323300006737MarineMHTPKQPRSIIAPSGSTARPVIREVRVGNEVRTEAHYTDPRTGQFITKIPISVRKIDDK*
Ga0098040_101454563300006751MarineMHQPKEPRAIVGPSGDTVRPVLKTVRLGNEERVEAHYTDPRTGQFITKIPVSVTTVDDK*
Ga0098048_110434023300006752MarineMHQPKEPRAIVGPSGDTVRPVLKTVRLGNEERVEAYYTDPRTGQFITKIPVSVTKVDDK*
Ga0098044_103206333300006754MarineMHQPKEPRAIVGPSGDTVRPVLKTVRLGNEERVEAHYTDPRTGQFITKIPVSVTKVDDK*
Ga0098054_105429323300006789MarineMHTPNQPRNIIAPSGDTARPTLRETRVGDEIRTEAYYSDPRTGQFMTKILVSVRKVDDK*
Ga0098055_124609213300006793MarineTRLYKMHQPKEPRAIVGPSGDTVRPVLKTVRMGNEVRVEAHYTDPRTGQFITKIPVSVTKVDDK*
Ga0066372_1035512413300006902MarineYKMHQPREPRAIVGPNGVTVRPVLKTVRLGNEVRVEAHYTDPTTGQFITKIPVSVTKVDDK*
Ga0098041_109238023300006928MarineMARAPKQPRPIIAPSGATARPVIKTVKVGDENRIEAHYTDPQTGQFITKINIGVDNDK*
Ga0098036_103546633300006929MarineMHQPKEPRAIVGPSGDTVRPVLKTVRLGNEVRVDAHYTDPRTGQFITKIPVSVTKVDDK*
Ga0098046_114563613300006990MarineMHTPNQLRSIVAPSGGTARPVIREIRVGDEIRTEAHYTDPNTGRFITKIPVSVRKIDDK*
Ga0105668_102055523300007758Background SeawaterMHQPREPRAIVGPSGDTVRPVLKTVRLGNEIRVEAHYTDPRTGQFITKIPVSVTKVDDK*
Ga0105668_115771123300007758Background SeawaterMHTPREPRAIIGPSGETIRPVLREIRIGNEIRTEAHYTDPKTGQFVTKIIVDSRPVNESK
Ga0114905_128704723300008219Deep OceanMHTPNQPKPIIGPSGATIRPVIKEIRVGNEIRTEAHYTDPKTGTFVTKIPVSVRPVNEPK
Ga0115649_124597423300009008MarineMHQPKEPRAIVGPSGATVRPVLKTVRLGNEQRVEAHYTDPQTGQFITKIPVSVTKVDDK*
Ga0114996_1021209833300009173MarineMHQPKEPRAIVGPSGDTVRPVLKTVRLGNEVRVEAHYTDPRTGQFITKIPVSVTKVDDK*
Ga0118716_109716833300009370MarineMHKPTQPKPIVAPSGQTARPVLRDVRIGDEIRTEAHYTDPATGQFITKIPVSSRSVNESE
Ga0114997_1003801733300009425MarineMHQPREPRAIVGPSGDTVRPVLKTVRMGNEDIVTAHYTDPRTGQFITKIPVSVTKVDDK*
Ga0114932_1001224683300009481Deep SubsurfaceMHVPNQPKPIIAPSGETARPVMKSVRLGNEIRIEAHYTDPKTNQFITKIPISVTKVDD*
Ga0114932_1053899923300009481Deep SubsurfaceMHTPNQPRSIVGPSGATVRPTIREIRVGNEIRTEAHYVDPRTGQFITKIPVSVRKVDDK*
Ga0114932_1056230713300009481Deep SubsurfaceMSHTPKQPRSIVAPSGGTARPVIREVRLGNEIRTEAHYTDPNTGIFITKIPISVRKIDDK
Ga0114932_1063599523300009481Deep SubsurfaceILAPSGETARPVIKNVRVGNEIRVEAHYTDPKTGQFITKIPVSVTKVDD*
Ga0114933_1014081333300009703Deep SubsurfaceMHTPKQPRNIIAPSGGTARPQLREVRIGDEIRTEAHYTDPNTGQFITKIPVSVRKIDDK*
Ga0114933_1020739223300009703Deep SubsurfaceMHKPTQLRSIVGPSGATERPVIREVRVGNIIRTEAHYTDGKTGQFITKITVSERPVDESK
Ga0114933_1029589823300009703Deep SubsurfaceMHTPNQPRSIVGPSGATVRPTIREIRVGNEIRTEAHYVDPRTGQFITKIPVSVRKVDD*
Ga0114933_1106082923300009703Deep SubsurfaceMAHIPKNPRPIVAPSGATARPVMKTVKIGNQIRTEAHYTDPTTGQFITNIPVSVEDDK*
Ga0115002_1012508423300009706MarineMHQPREPRAIVGPSGDTVRPVLKTVRLGNEVRVEAHYTDPRTGQFITKIPVSVTKVDDK*
Ga0114999_1019839533300009786MarineMHQHQPREPRAIVGPNGVTVRPVLRTVTVGNEVRVEAHYTDPTTGQFITKIPVSVTKIDDK*
Ga0115012_10004223103300009790MarineMHKPNQLRSITAPSGGTARPIVKEVRVGDEIRTEAHYTDPRTGQFITKIPISVRKVDDK*
Ga0115012_1021263623300009790MarineMHVPNQPKPIIAPSGETARPVMRSVRLGNEIRMEAHYTDPKTGQFITKIPVSVTKVDD*
Ga0098043_106713223300010148MarineHTPKQPRNIIGPSGATVRPQIKEIKVGDEIRTEAHYTDPNTGQFITKIAVSVRKIDDK*
Ga0098059_112235823300010153MarineMHQPREPRGIIAPSGDTARPVLKTVRLGNEIRVEAHYTDPRTGQFMTKIPVSVTKVDDK*
Ga0160423_1027198023300012920Surface SeawaterMHTPNQPRSIVGPSGATVRPTIREIRVGNEIRTEAHYVDPNTGQFITKIPVSVRKVDDK*
Ga0181367_100092123300017703MarineMHLPRVPRAIVGPSGDTVRPVIKNITIAGEFRVEAHYTDPRTGQFITKIPISVTKIDDK
Ga0181385_112000423300017764SeawaterNQPKPIIAPSGETARPVMRSVRLGNEIRMEAHYTDPKTGQFITKIPVSVTKVDD
Ga0181386_111520113300017773SeawaterNQPRNIIGPSGATVRPQIKQIKVGDEIRTEAHYTDPNTGQFITKIPVSVRKIDDK
Ga0181432_109456913300017775SeawaterQPKSIVSPSGATARPVMKEIRIGNEIRTEAHYTDPNTGQFITKIPVSVRPVNESE
Ga0181432_111190123300017775SeawaterMHQPKEPRAIVGPSGDTVRPVLKTVRLGNEERVEAHYTDPRTGQFITKIPVSVTKIDDK
Ga0181568_1023073023300018428Salt MarshMSHTPNQPRPIVGPSGQTVRPVIREIRVGNEIRTEAHYTDPGTGQFITKIPISTRKVDDK
Ga0211699_1000678113300020410MarineMYTPDQPRNIIAPSGATARPTIREIRVGNEIRTEAHYTDPRTGQFITKIPVSVRKVDDK
Ga0211699_1032565823300020410MarineMHTPNQPRSIVGPSGATVRPTIREIRVGNEIRTEAHYVDPRTGQFITKIPVSVRKVDDK
Ga0211576_1011340123300020438MarineMHVPKQPRPIVAPSGETARPVMKSVRLGDEIRMEAHYTDPKTGQFITKIPVSVTKVDD
Ga0211643_1035927723300020457MarineILLIRQYMAHIPKNPRPIVAPSGATARPVLKTVKFGNQIRTEAHYTDPTTGQFITKIPVSVEVEDDK
Ga0211543_1024542423300020470MarineMHKPTQLRSIVGPSGATARPVIREVRIGNIIRTEAHYSDGKTGQFITKITVSERPVDESK
Ga0206683_1029454823300021087SeawaterMHQPREPRAIVGPSGDTVRPVLKTVRLGNEERVEAHYTDPRTGQFITKIPVSVTKVDDK
Ga0206679_1015138323300021089SeawaterMHQPKEPRAIVGPSGDTVRPVLKTVRLGNEERVEAHYTDPRTGQFITKIPVSVTKVDDK
Ga0187827_1002896363300022227SeawaterMHLPRVPRAIVGPSGDTVRPVIKNITIDGEFRVEAHYTDPRTGQFITKIPISVTKIDDK
(restricted) Ga0233427_1008266523300022933SeawaterMHQPKEPRGIIAPSGDTARPVLKTVRLGNEIRVEAHYTDPRTGQFMTKIPVSVTKVDDK
Ga0208012_1001233123300025066MarineMHLPRVPRAIVGPSGDTVRPVMKNITIDGEVRVEAHYTDPRTGQFITKIPISVTKIDDK
Ga0208920_1000382113300025072MarineMHLPRVPRAIVGPSGDTVRPVIKNITIDGEIRVEAHYTDPRTGQFITKIPISVTKIDDK
Ga0208920_100445323300025072MarineMHKPRQPKSIVAPSGATARPVLREIRIGNEVRTEAHYTDPTTNQFITKIPVSVRSVDESE
Ga0208011_101164213300025096MarineMHQPKEPRAIVGPSGDTVRPVLKTVRLGNEERVEAHYTDPRTGQFITKIPVSVTTVDDK
Ga0208666_104650313300025102MarineMHTPKQPRSIIAPSGSTARPVIREVRVGNEVRTEAHYTDPRTGQFITKIPISVRKIDDK
Ga0208666_105230823300025102MarineMHKPNQLRSITAPSGGTARPIVKEVRIGDEIRTEAHYTDPRTGQFITKIPISVRKVDDK
Ga0208013_114143223300025103MarineMHTPNQPRNIIAPSGDTARPTLRETRVGDEIRTEAYYSDPRTGQFMTKILVSVRKVDDK
Ga0208793_108046523300025108MarineMHLPRVPRAIVGPSGDTVRPVMKNITIGGEIRVEAHYTDPRTGQFITKIPISVTKIDDK
Ga0208158_116180513300025110MarineMSHTPNQPRNIIGPSGHTIRPVIKDVRVGNEIRTEAHYTDPQTGQFVTKIPISVRKIDDK
Ga0209434_1001782103300025122MarineMHLPRVPRAIVGPSGDTVRPVMKNITIDGEFRVEAHYTDPRTGQFITKIPISVTKIDDK
Ga0209645_102159543300025151MarineMRNPNQPRNIIGPSGATVRPTIREIRVGDEIRTEAHYTDPRTGQFITKIPVSVRKVDDK
Ga0209645_122734923300025151MarineMHKPTQLRSIVGPSGATARPVIREVRIGNIIRTEAHYTDGKTGQFITKVTVSERPVDESK
Ga0209337_1000093393300025168MarineMHVPTQPRAIVAPSGETARPVIKNVRVGDEIRVEAHYTDPKTGQFITKIPVSVTKVDD
Ga0209337_1009677123300025168MarineMHQHQPREPRAIVGPNGVTVRPVLKTVKVGNEVRVEAHYTDPTTGQFITKIPVSVDKVDD
Ga0208179_105484323300025267Deep OceanMHIPRQPKSLVAPSGFTARPVMREIRIGNEIRTEAHYTDPQTGQFITKIPVSVRPVDEPK
Ga0208183_110485713300025274Deep OceanPRQPKSLVAPSGFTARPVMREIRIGNEIRTEAHYTDPQTGQFITKIPVSVRPVDEPK
Ga0209362_117482223300025770MarineMHQPKEPRAIVGPSGDTARPVLKTVRMGNEVRVEAHYTDPRTGQFITKIPVSVTKVDDK
Ga0209757_1006187823300025873MarineMHTPIQPKSIVGPSGETVRPMIREIRVGNEIRTEAHYTDPRTNQFITKITLSARPVNEPK
Ga0208406_105867613300026205MarineMHLPKVPRAIVGPSGDTVRPVIKNITIDGEFRVEAHYTDPRTGQFITKIPISVTKIDDK
Ga0209554_122731423300027685MarineMHQPREPRAIVGPSGDTVRPVLKTVRLGNEIRVEAHYTDPRTGQFITKIPVSVTKVDDK
Ga0209815_105884823300027714MarineMHQPKEPRAIVGPSGDTARPVLKTVRIGNEVRVEAHYTDPRTGQFITKIPVSVTKVDDK
Ga0209709_1001338623300027779MarineMHQPREPRAIVGPSGDTVRPVLKTVRMGNEDIVTAHYTDPRTGQFITKIPVSVTKVDDK
Ga0209089_1023509223300027838MarineMHQPREPRAIVGPNGVTVRPVLRTVTVGNEVRVEAHYTDPTTGQFITKIPVSVTKVDDK
Ga0257107_117349523300028192MarineKAIKMHQPREPRAIVGPSGDTVRPVLKTVRLGNEVRVEAHYTDPRTGQFITKIPVSVTKVDDK
Ga0315328_1025575023300031757SeawaterMHQPKEPRAIVGPSGDTVRPVLKTVRMGNEVRVEAHYTDPRTGQFITKIPVSVTKVDDK
Ga0315332_1021846923300031773SeawaterMHQPREPRAIVGPSGDTVRPVLKTVRMGNEVRVEAHYTDPRTGQFITKIPVSVTKVDDK
Ga0315331_1019739033300031774SeawaterMHVPRQPRPIVAPSGETARPVIRNVRVGDEIRVEAHYTDPKTGQFITKIPVSVTKVDD
Ga0315326_1073091123300031775SeawaterMHTPNQPRNIIGPSGATVRPQIKQIKVGDEIRTEAHYTDPNTGQFITKIPVSVRKIDDK
Ga0315327_1047375123300032032SeawaterMHQPKEPRAIVGPSGDTVRPVLKTVRLGNEVRVEAHYTDPRTGQFITKIPVSVTKVDDK
Ga0315315_1048695623300032073SeawaterMHVPRQPRPIVAPSGETARPVIRNVRVGDEIRVEAHYTDPKTGQFITKIPVSVTKV
Ga0315336_115907013300032132SeawaterMPPEIRYTPNPHTITAPSGATVAPVMREIRMGNEIRTEAHYTDPTTGQFITKVLVST
Ga0315334_10001470153300032360SeawaterMHQPREPRAIVGPNGVTVRPVLRTVRVGNEVRVEAHYTDPTTGQFITKIPVSVTKVDDK
Ga0315334_1007924233300032360SeawaterMHQPREPRAIVGPSGDTVRPVLKTVRLGNEERVFAHYTDPRTGQFITKIPVSVTKVDDK
Ga0315334_1048495423300032360SeawaterMHQPREPRAIVGPNGVTVRPVLKTVRLGNEVRVEAHYTDPTTGQFITKIPVSVTKVDDK
Ga0315334_1049827913300032360SeawaterMHTPREPRAIVGPSGETIRPVLREIRIGNEIRTEAHYTDPKTGQFVTKIIVDSRPVNESK

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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