NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F105502

Metagenome Family F105502

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105502
Family Type Metagenome
Number of Sequences 100
Average Sequence Length 50 residues
Representative Sequence MLSSYQRLKFKKDLAVKVAEELKEDIEFIIMRPHTARAKNIRREVKEKNNG
Number of Associated Samples 73
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 21.00 %
% of genes near scaffold ends (potentially truncated) 33.00 %
% of genes from short scaffolds (< 2000 bps) 79.00 %
Associated GOLD sequencing projects 65
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (58.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous
(15.000 % of family members)
Environment Ontology (ENVO) Unclassified
(65.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(62.000 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 86.27%    β-sheet: 0.00%    Coil/Unstructured: 13.73%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF13404HTH_AsnC-type 25.00
PF13412HTH_24 21.00
PF13385Laminin_G_3 4.00
PF13539Peptidase_M15_4 3.00
PF14550Peptidase_S78_2 2.00
PF04404ERF 2.00
PF03692CxxCxxCC 1.00
PF08299Bac_DnaA_C 1.00
PF04860Phage_portal 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG0593Chromosomal replication initiation ATPase DnaAReplication, recombination and repair [L] 1.00

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A58.00 %
All OrganismsrootAll Organisms42.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000115|DelMOSum2011_c10002213All Organisms → cellular organisms → Archaea12432Open in IMG/M
3300004097|Ga0055584_101200699Not Available791Open in IMG/M
3300004276|Ga0066610_10292727Not Available515Open in IMG/M
3300005612|Ga0070723_10392967Not Available670Open in IMG/M
3300006191|Ga0075447_10110425All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → unclassified Cytophagales → Cytophagales bacterium947Open in IMG/M
3300006468|Ga0082251_10058469All Organisms → Viruses → Predicted Viral1449Open in IMG/M
3300006735|Ga0098038_1008829All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Parvibaculum → unclassified Parvibaculum → Parvibaculum sp.3996Open in IMG/M
3300006750|Ga0098058_1008272All Organisms → Viruses → Predicted Viral3138Open in IMG/M
3300006750|Ga0098058_1201975Not Available517Open in IMG/M
3300006789|Ga0098054_1197452Not Available734Open in IMG/M
3300006793|Ga0098055_1210045Not Available738Open in IMG/M
3300006803|Ga0075467_10115304All Organisms → Viruses → Predicted Viral1582Open in IMG/M
3300006920|Ga0070748_1001424Not Available11179Open in IMG/M
3300006920|Ga0070748_1053835All Organisms → Viruses → Predicted Viral1593Open in IMG/M
3300006920|Ga0070748_1310163Not Available560Open in IMG/M
3300006921|Ga0098060_1011792All Organisms → Viruses → Predicted Viral2831Open in IMG/M
3300006924|Ga0098051_1175319Not Available563Open in IMG/M
3300006925|Ga0098050_1049280All Organisms → Viruses → Predicted Viral1111Open in IMG/M
3300007276|Ga0070747_1003787Not Available7019Open in IMG/M
3300007276|Ga0070747_1077125All Organisms → Viruses → Predicted Viral1246Open in IMG/M
3300007276|Ga0070747_1119617Not Available961Open in IMG/M
3300007276|Ga0070747_1214134Not Available676Open in IMG/M
3300007540|Ga0099847_1223305Not Available546Open in IMG/M
3300008050|Ga0098052_1001270Not Available15868Open in IMG/M
3300008470|Ga0115371_10102926Not Available20016Open in IMG/M
3300008470|Ga0115371_11247162All Organisms → Viruses → Predicted Viral1130Open in IMG/M
3300008470|Ga0115371_11277425All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon8657Open in IMG/M
3300009071|Ga0115566_10074524All Organisms → Viruses → Predicted Viral2231Open in IMG/M
3300009077|Ga0115552_1003408Not Available8926Open in IMG/M
3300009136|Ga0118735_10319380Not Available537Open in IMG/M
3300009149|Ga0114918_10215201All Organisms → Viruses → Predicted Viral1109Open in IMG/M
3300009193|Ga0115551_1012812All Organisms → Viruses → Predicted Viral4525Open in IMG/M
3300009193|Ga0115551_1053721All Organisms → Viruses → Predicted Viral1968Open in IMG/M
3300009193|Ga0115551_1142993All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon1099Open in IMG/M
3300009449|Ga0115558_1334889Not Available597Open in IMG/M
3300009496|Ga0115570_10487786Not Available515Open in IMG/M
3300009497|Ga0115569_10221885Not Available862Open in IMG/M
3300010368|Ga0129324_10144933Not Available993Open in IMG/M
3300010368|Ga0129324_10193774Not Available828Open in IMG/M
3300010368|Ga0129324_10218729Not Available768Open in IMG/M
3300010430|Ga0118733_103167094Not Available899Open in IMG/M
3300014903|Ga0164321_10215964Not Available880Open in IMG/M
3300017714|Ga0181412_1046103All Organisms → Viruses → Predicted Viral1120Open in IMG/M
3300017728|Ga0181419_1041603All Organisms → Viruses → Predicted Viral1220Open in IMG/M
3300017771|Ga0181425_1198658Not Available630Open in IMG/M
3300017824|Ga0181552_10270915Not Available847Open in IMG/M
3300017824|Ga0181552_10512061Not Available564Open in IMG/M
3300019459|Ga0181562_10336128Not Available742Open in IMG/M
3300020185|Ga0206131_10198956All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon986Open in IMG/M
3300021958|Ga0222718_10012631All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon6151Open in IMG/M
3300021959|Ga0222716_10209722All Organisms → Viruses → Predicted Viral1228Open in IMG/M
3300021964|Ga0222719_10271824All Organisms → Viruses → Predicted Viral1114Open in IMG/M
3300022072|Ga0196889_1051889Not Available793Open in IMG/M
3300022072|Ga0196889_1088980Not Available570Open in IMG/M
3300022178|Ga0196887_1011173All Organisms → Viruses → Predicted Viral2880Open in IMG/M
3300022202|Ga0224498_10036911All Organisms → Viruses → Predicted Viral1363Open in IMG/M
3300022206|Ga0224499_10011060All Organisms → Viruses → Predicted Viral2638Open in IMG/M
3300022306|Ga0224509_10046370All Organisms → Viruses → Predicted Viral1463Open in IMG/M
3300022306|Ga0224509_10188354Not Available737Open in IMG/M
3300022929|Ga0255752_10134122All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon1267Open in IMG/M
(restricted) 3300023112|Ga0233411_10000083Not Available32577Open in IMG/M
(restricted) 3300023112|Ga0233411_10232486Not Available612Open in IMG/M
(restricted) 3300023210|Ga0233412_10002721Not Available8441Open in IMG/M
(restricted) 3300023210|Ga0233412_10077928All Organisms → Viruses → Predicted Viral1373Open in IMG/M
(restricted) 3300023210|Ga0233412_10098617All Organisms → Viruses → Predicted Viral1225Open in IMG/M
(restricted) 3300024059|Ga0255040_10043660All Organisms → Viruses → Predicted Viral1634Open in IMG/M
(restricted) 3300024062|Ga0255039_10126969All Organisms → Viruses → Predicted Viral1034Open in IMG/M
(restricted) 3300024062|Ga0255039_10318004Not Available666Open in IMG/M
(restricted) 3300024062|Ga0255039_10552618Not Available504Open in IMG/M
3300024262|Ga0210003_1114699All Organisms → Viruses → Predicted Viral1204Open in IMG/M
3300024262|Ga0210003_1167289Not Available928Open in IMG/M
3300024262|Ga0210003_1300107Not Available615Open in IMG/M
3300024262|Ga0210003_1352921Not Available547Open in IMG/M
(restricted) 3300024520|Ga0255047_10467968Not Available634Open in IMG/M
(restricted) 3300024528|Ga0255045_10107621All Organisms → Viruses → Predicted Viral1021Open in IMG/M
3300025072|Ga0208920_1026331All Organisms → Viruses → Predicted Viral1233Open in IMG/M
3300025086|Ga0208157_1090401Not Available750Open in IMG/M
3300025099|Ga0208669_1016141All Organisms → Viruses → Predicted Viral1981Open in IMG/M
3300025133|Ga0208299_1134628Not Available794Open in IMG/M
3300025168|Ga0209337_1290597Not Available599Open in IMG/M
3300025643|Ga0209151_1186264Not Available515Open in IMG/M
3300025645|Ga0208643_1039416All Organisms → Viruses → Predicted Viral1508Open in IMG/M
3300025647|Ga0208160_1154516Not Available552Open in IMG/M
3300025769|Ga0208767_1007513All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon7127Open in IMG/M
3300025816|Ga0209193_1097526Not Available735Open in IMG/M
3300025895|Ga0209567_10270430Not Available809Open in IMG/M
(restricted) 3300027856|Ga0255054_10408730Not Available660Open in IMG/M
(restricted) 3300027861|Ga0233415_10000542Not Available17623Open in IMG/M
(restricted) 3300027861|Ga0233415_10020782All Organisms → Viruses → Predicted Viral2614Open in IMG/M
(restricted) 3300027868|Ga0255053_10332674Not Available734Open in IMG/M
(restricted) 3300027996|Ga0233413_10087573All Organisms → Viruses → Predicted Viral1242Open in IMG/M
3300031539|Ga0307380_10757260Not Available809Open in IMG/M
3300031565|Ga0307379_10163826All Organisms → Viruses → Predicted Viral2320Open in IMG/M
3300031565|Ga0307379_10532395All Organisms → Viruses → Predicted Viral1091Open in IMG/M
3300031578|Ga0307376_10391245Not Available915Open in IMG/M
3300031578|Ga0307376_10930967Not Available528Open in IMG/M
3300031669|Ga0307375_10519294Not Available715Open in IMG/M
3300031673|Ga0307377_10550915Not Available832Open in IMG/M
3300031673|Ga0307377_10841266Not Available631Open in IMG/M
3300033742|Ga0314858_127159Not Available652Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous15.00%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine14.00%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater11.00%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine9.00%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater8.00%
SoilEnvironmental → Terrestrial → Soil → Clay → Unclassified → Soil8.00%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface5.00%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh4.00%
SedimentEnvironmental → Aquatic → Marine → Sediment → Unclassified → Sediment4.00%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient3.00%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine3.00%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water3.00%
SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment3.00%
Marine SedimentEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment2.00%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine2.00%
SedimentEnvironmental → Aquatic → Marine → Oceanic → Sediment → Sediment1.00%
Sea-Ice BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine1.00%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater1.00%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine1.00%
Marine SedimentEnvironmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment1.00%
Marine SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Sediment1.00%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000115Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011EnvironmentalOpen in IMG/M
3300004097Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaGEnvironmentalOpen in IMG/M
3300004276Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_165mEnvironmentalOpen in IMG/M
3300005612Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd00.2EnvironmentalOpen in IMG/M
3300006191Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNAEnvironmentalOpen in IMG/M
3300006468Deep-sea sediment bacterial and archaeal communities from Fram Strait - Combined Assembly of Gp0119454, Gp0119453, Gp0119452, Gp0119451EnvironmentalOpen in IMG/M
3300006735Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaGEnvironmentalOpen in IMG/M
3300006750Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaGEnvironmentalOpen in IMG/M
3300006789Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaGEnvironmentalOpen in IMG/M
3300006793Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaGEnvironmentalOpen in IMG/M
3300006803Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_DNAEnvironmentalOpen in IMG/M
3300006920Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12EnvironmentalOpen in IMG/M
3300006921Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaGEnvironmentalOpen in IMG/M
3300006924Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaGEnvironmentalOpen in IMG/M
3300006925Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaGEnvironmentalOpen in IMG/M
3300007276Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31EnvironmentalOpen in IMG/M
3300007540Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaGEnvironmentalOpen in IMG/M
3300008050Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaGEnvironmentalOpen in IMG/M
3300008470Sediment core microbial communities from Adelie Basin, Antarctica. Combined Assembly of Gp0136540, Gp0136562, Gp0136563EnvironmentalOpen in IMG/M
3300009071Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405EnvironmentalOpen in IMG/M
3300009077Pelagic marine microbial communities from North Sea - COGITO_mtgs_110328EnvironmentalOpen in IMG/M
3300009136Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 82 cmbsfEnvironmentalOpen in IMG/M
3300009149Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaGEnvironmentalOpen in IMG/M
3300009193Pelagic marine microbial communities from North Sea - COGITO_mtgs_110321EnvironmentalOpen in IMG/M
3300009449Pelagic marine microbial communities from North Sea - COGITO_mtgs_110426EnvironmentalOpen in IMG/M
3300009496Pelagic marine microbial communities from North Sea - COGITO_mtgs_120524EnvironmentalOpen in IMG/M
3300009497Pelagic marine microbial communities from North Sea - COGITO_mtgs_120503EnvironmentalOpen in IMG/M
3300010368Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.2_DNAEnvironmentalOpen in IMG/M
3300010430Marine sediment microbial communities from Gulf of Thailand under amendment with organic carbon and nitrate - JGI co-assembly of 8 samplesEnvironmentalOpen in IMG/M
3300014903Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay12, Core 4567-28, 21-24 cmEnvironmentalOpen in IMG/M
3300017714Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 35 SPOT_SRF_2012-08-15EnvironmentalOpen in IMG/M
3300017728Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 42 SPOT_SRF_2013-04-24EnvironmentalOpen in IMG/M
3300017771Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 48 SPOT_SRF_2013-11-13EnvironmentalOpen in IMG/M
3300017824Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300019459Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011511BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300020185Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1EnvironmentalOpen in IMG/M
3300021958Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27DEnvironmentalOpen in IMG/M
3300021959Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13DEnvironmentalOpen in IMG/M
3300021964Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34DEnvironmentalOpen in IMG/M
3300022072Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v3)EnvironmentalOpen in IMG/M
3300022178Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v3)EnvironmentalOpen in IMG/M
3300022202Sediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_21EnvironmentalOpen in IMG/M
3300022206Sediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_24EnvironmentalOpen in IMG/M
3300022306Sediment microbial communities from San Francisco Bay, California, United States - SF_Jan12_sed_USGS_24EnvironmentalOpen in IMG/M
3300022929Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaGEnvironmentalOpen in IMG/M
3300023112 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_2_MGEnvironmentalOpen in IMG/M
3300023210 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_4_MGEnvironmentalOpen in IMG/M
3300024059 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_2EnvironmentalOpen in IMG/M
3300024062 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_1EnvironmentalOpen in IMG/M
3300024262Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300024520 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_1EnvironmentalOpen in IMG/M
3300024528 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_23EnvironmentalOpen in IMG/M
3300025072Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025086Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025099Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025133Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025168Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)EnvironmentalOpen in IMG/M
3300025643Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_165m (SPAdes)EnvironmentalOpen in IMG/M
3300025645Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (SPAdes)EnvironmentalOpen in IMG/M
3300025647Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025769Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (SPAdes)EnvironmentalOpen in IMG/M
3300025816Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330 (SPAdes)EnvironmentalOpen in IMG/M
3300025895Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - COGITO 998_met_12 (SPAdes)EnvironmentalOpen in IMG/M
3300027856 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_23EnvironmentalOpen in IMG/M
3300027861 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_12_MGEnvironmentalOpen in IMG/M
3300027868 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_22EnvironmentalOpen in IMG/M
3300027996 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_6_MGEnvironmentalOpen in IMG/M
3300031539Soil microbial communities from Risofladan, Vaasa, Finland - UN-3EnvironmentalOpen in IMG/M
3300031565Soil microbial communities from Risofladan, Vaasa, Finland - UN-2EnvironmentalOpen in IMG/M
3300031578Soil microbial communities from Risofladan, Vaasa, Finland - TR-2EnvironmentalOpen in IMG/M
3300031669Soil microbial communities from Risofladan, Vaasa, Finland - TR-1EnvironmentalOpen in IMG/M
3300031673Soil microbial communities from Risofladan, Vaasa, Finland - TR-3EnvironmentalOpen in IMG/M
3300033742Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - 2018 seawaterEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2011_1000221393300000115MarineMLSSYQRLKFKKDLAVKVAEELKEDIEFIIMRPHTARAKNIRREVKEKNNG*
Ga0055584_10120069913300004097Pelagic MarineMLSSYQRLKFKKEAAVKVADELKEDIEFIIMRPHSKRAKAIRREVK
Ga0066610_1029272723300004276MarineSNLNKMLSSYQRLKFKKDLAVKVAEELKEDIEFVILYPHTARAKNIRREVKEKNNG*
Ga0070723_1039296713300005612Marine SedimentKMLSSYQRLKFKKDLAVKVAEELKEDIEFIIMRPHTARAKNIRREVKEKNNG*
Ga0075447_1011042523300006191MarineMLSSYQRLKFKKDLAVKVAEELKEDIEFIIMRPHTARAKNIRREVKEKQNG*
Ga0082251_1005846923300006468SedimentMLSSYQRLKLKKELAVKMAEETIENMEFVILYPHTARAKNIRREVKEKQNG*
Ga0098038_100882983300006735MarineMLSSYQRLKFKKDLAVKVAEELKEDIEFIIMRPHSKRAKAIRREVKEKNNG*
Ga0098058_100827253300006750MarineMLSSYQRLKFKKEAAVKAAEELKEDIEFIIMRPHTARAKNIRREVKEKHNG*
Ga0098058_120197523300006750MarineMLSSYQRLKLKKEAAVKVAEELKEDIEFIIMRPHSKRAKNIRREVKEKHNG*
Ga0098054_119745223300006789MarineMLSSYQRLKFKKEAAVKAAEELKEDIEFIIMRPHSKRAKNIRREVKEKHNG*
Ga0098055_121004523300006793MarineMLSSYQRLKFKKEAALKAAEELKEDIDFIIMRPHSKRAKAIRREVKEKNNG*
Ga0075467_1011530423300006803AqueousMLSSYQRLKFKKDLAVKVAEELKEDIEFIIMRPHTARAKNIRREVKERQNG*
Ga0070748_100142423300006920AqueousMLSSYQRLKFKKEAAVKVAEELKEDIEFIIMRPHSKRAKAIRREVKEKNNG*
Ga0070748_105383523300006920AqueousMISSYQRLKVKMERAKQVADELKEDIEFVILRPYSSRAKNIRREVKEKEDYNG*
Ga0070748_131016323300006920AqueousMLSSYQRLKFKKDLAVKSAEELKEDIEFIIMRPHSKRAKAIRREVKEKQNG*
Ga0098060_101179223300006921MarineMLSSYQRLKFKKEAAVKAAEELKEDIEFIIMRPHSKRAKAIRREVKEKNNG*
Ga0098051_117531923300006924MarineMLSSYQRLKFKKEAAVKAAEELKEDIDFIIMRPHSKRAKAIRREVKEKNNG*
Ga0098050_104928023300006925MarineMLSSYQRLKFKKEAAVKAAEELKEDIEFIIMRPHSKRAKAIRRTIKERENG*
Ga0070747_100378713300007276AqueousTFGVLEQLELKKMLSSYQRLKFKKEAAVKVAEELKEDIEFIIMRPHSKRAKAIRREVKEKNNG*
Ga0070747_107712523300007276AqueousMLSSYQRLKFKKDIAVKEADELKEDIELIIMRTHSKRAKAIRREVKEKHNG*
Ga0070747_111961713300007276AqueousMISSYQRLKVKMELAKQVADELKEDIEFVILRPYSSRAKNIRREVKEKEDYNG*
Ga0070747_121413413300007276AqueousSYQRLKFKKEAAVKVADELKEDIEFIIMRPHSKRAKAIRRTIKERENG*
Ga0099847_122330523300007540AqueousMLSSYQRLKFKKEAAVKVADELKEDIEFIIMRPHSKRAKAIRREVKEKHNG*
Ga0098052_100127023300008050MarineMLSSYQRLKFKKEAAVKVAEELKEDIEFIIMRPHSKRAKNIRREVKEKHNG*
Ga0115371_1010292623300008470SedimentMLSSYQRLKLKKELAVKFAEETKEDIEFVILRPHSRRAKNIRREVKDRNNG*
Ga0115371_1124716223300008470SedimentMLSSYQRLKLKKELAVKMAEETIENMEFVILYPHTARAKNIRREVKERQNG*
Ga0115371_11277425113300008470SedimentMLSSYQRLKLKKELAVKFAEETKEDIEFVILRPHSRRAK
Ga0115566_1007452453300009071Pelagic MarineMLSSYQRLKFKKDLAVKVADELKEDIEFIIMRPHSKRAKAIRREVKEKNNG*
Ga0115552_100340833300009077Pelagic MarineMLSSYQRLKFKKDLAVKVADELKEDIEFIIMRPHSKRAKAIRREVKEKQNG*
Ga0118735_1031938023300009136Marine SedimentMLSSYQRLKLKKELAVKMAEETIENMEFVILYPHTARAKNIRREVKEKNNG*
Ga0114918_1021520123300009149Deep SubsurfaceMISSYQKLKIKKDKAEAIAEELKEDIEFVILHPYSSRAKNIRREIKEKENNG*
Ga0115551_1012812103300009193Pelagic MarineLKFKKDLAVKVADELKEDIEFIIMRPHSKRAKAIRREVKEKQNG*
Ga0115551_105372123300009193Pelagic MarineMLSSYQRLKFKKDLAVKVADELKEDIEFIIMRPHSKRAKAIRREVKEK
Ga0115551_114299333300009193Pelagic MarineLKFKKDLAVKVADELKEDIEFIIMRPHSKRAKAIRREVKEKNNG*
Ga0115558_133488913300009449Pelagic MarineRKMLSSYQRLKFKKEAAQKAAEELKEDIEFIIMRPHTARAKNIRREVKEKNNG*
Ga0115570_1048778623300009496Pelagic MarineRKMLSSYQRLKFKKDLAVKVADELKEDIEFIIMRPHTARAKNIRREVKEKHNG*
Ga0115569_1022188523300009497Pelagic MarineMLSSYQRLKFKKDLAVKVADELKEDIEFIIMRPHTARAKNIRREVKEKHNG*
Ga0129324_1014493323300010368Freshwater To Marine Saline GradientMLSSYQRLKFKKDLAVKAAEELKEDIEFIIMRPHSKRAKAIRREVKEKNNG*
Ga0129324_1019377423300010368Freshwater To Marine Saline GradientMISSYQRLKVKMELAKQVADELKEDIEFVILRPYSSRAKNIRREVKEKEEYNG*
Ga0129324_1021872923300010368Freshwater To Marine Saline GradientSYQRLKVKMELAKQVADELKEDIEFVILRPYSSRAKNIRREVKEKEDYNG*
Ga0118733_10316709423300010430Marine SedimentMLSSYQRLKFKKEAAVKVAEELKEDIEFIIMRPHTARAKNIRREVKEKNNG*
Ga0164321_1021596423300014903Marine SedimentMLSSYQRLKFKKEAAQKAAEELKEDIEFIIMRPHSKRAKAIRRTIKERENG*
Ga0181412_104610323300017714SeawaterMLSSYQRLKFKKEAAVKVADELKEDIEFIIMRPHSKRAKAIRREVKEKHNG
Ga0181419_104160323300017728SeawaterMLSSYQRLKFKKEAAVKVADELKEDIEFIIMRPHSKRAKAIRREVKEKNNG
Ga0181425_119865823300017771SeawaterMLSSYQRLKFKKDLAVKVAEELKEDIEFIIMRPHSKRAKAIRGEV
Ga0181552_1027091523300017824Salt MarshMLSSYQRLKFKKDLAVKVADELKEDIEFIIMRPHSKRAKAIRREVKEKHNG
Ga0181552_1051206113300017824Salt MarshRKMLSSYQRLKFKKDLAVKVADELKEDIEFIIMRPHSKRAKAIRREVKEKNNG
Ga0181562_1033612813300019459Salt MarshLELRKMLSSYQRLKFKKDLAVKVADELKEDIEFIIMRPHRKRAKAIRREVKEKHNG
Ga0206131_1019895623300020185SeawaterMLSSYQRLKFKKDLAVKVAEELKEDIEFIIMRPHTARAKNIRREVKEKNNG
Ga0222718_1001263143300021958Estuarine WaterMLSSYQKLKIKKDVAEKIASDLKEDIEFLILYPYSSRAKSIRREIKEQYENG
Ga0222716_1020972223300021959Estuarine WaterMLSSYQRLKFKKDLAVKVADELKEDIEFIIMRPHTARAKNIRREVKEKNNG
Ga0222719_1027182423300021964Estuarine WaterMLSSYQKLKIKKDVAEKIAIDLKEDIEFLILYPYSSRAKSIRREIKEQYENG
Ga0196889_105188913300022072AqueousMLSSYQRLKFKKDLAVKVAEELKEDIEFIIMRPHTARAKNIRREVKEKNK
Ga0196889_108898013300022072AqueousMLSSYQRLKFKKEAAQKAAEELKEDIEFIIMRPHSKRAKAIRREVKEKHNG
Ga0196887_101117333300022178AqueousMLSSYQRLKFKKEAAVKVAEELKEDIEFIIMRPHSKRAKAIRREVKEKNNG
Ga0224498_1003691123300022202SedimentMLSSYQRLKFKKDLAVKVADELKEDIEFIIMRPHSKRAKAIRREVKEKNNG
Ga0224499_1001106023300022206SedimentMLSSYQRLKFKKDLAQKVAEELKEDIEFIIMRPHTARAKNIRREVKERQNG
Ga0224509_1004637043300022306SedimentMLSSYQRLKFKKDLAVKVAEELKEDIEFIIMRPHTARAKAIRREVKEKNNG
Ga0224509_1018835423300022306SedimentMFGVLEQLDLRKMLSSYQRLKFKKDLAQKVAEELKEDIEFIIMRPHTARAKNIRREVKERQNG
Ga0255752_1013412233300022929Salt MarshELRKMLSSYQRLKFKKDLAVKAAEELKEDIEFIIMRPHSKRAKAIRREVKEKNNG
(restricted) Ga0233411_10000083333300023112SeawaterMLSSYQRLKFKKDLAVKVAEELKEDIEFVILYPHTARAKNIRREVKEKNNG
(restricted) Ga0233411_1023248623300023112SeawaterMYGLLEQLELRKMLSSYQRLKFKKEAAQKAAEELKEDIEFIIMRPHTARAKNIRREVKEKHNG
(restricted) Ga0233412_10002721123300023210SeawaterMLSSYQRLKFKKEAAQKAAEELKEDIEFIIMRPHTARAKNIRREVKEKNNG
(restricted) Ga0233412_1007792833300023210SeawaterMLSSYQRLKFKKEAAQKAAEELKEDIEFIIMRPHTARAKNIRREVKEKHNG
(restricted) Ga0233412_1009861723300023210SeawaterMLSSYQRLKFKKDLAVKVADELKEDIEFVILYPHTARAKNIRREVKERQNG
(restricted) Ga0255040_1004366023300024059SeawaterMLSSYQRLKFKKEAAVKAAEELKEDIEFIIMRPHTARAKNIRREVKEKNNG
(restricted) Ga0255039_1012696913300024062SeawaterMLSSYQRLKFKKDLAVKAAEELKEDIEFIIMRPHSKRAKAIRR
(restricted) Ga0255039_1031800423300024062SeawaterMLSSYQRLKFKKDLAVKVADELKEDIEFIIMRPHTARAKAIRREVKEKNNG
(restricted) Ga0255039_1055261813300024062SeawaterTVRVKKDASSYQRLKFKKDLAVKAAEELKEDIEFIIMRPHSKRAKAIRRTIKERENG
Ga0210003_111469923300024262Deep SubsurfaceMISSYQKLKIKKDKAEAIAEELKEDIEFVILHPYSSRAKNIRREIKEKENNG
Ga0210003_116728923300024262Deep SubsurfaceMLSSYQRLKYKKDLAVKVADELKEDIEFVILYPHTARAKNIRREVKEKQNG
Ga0210003_130010713300024262Deep SubsurfaceMLSSYQRLKFKKDLAVKVADELKEDIEFVILYPHTARAKNIRREVKEKQNG
Ga0210003_135292113300024262Deep SubsurfaceMLSSYQRLKFKKDLAVKVADELKEDIEFIIMRPHSKRAKAIRREVKEKQNG
(restricted) Ga0255047_1046796823300024520SeawaterMLSSYQRLKFKKESAQKAAEELKEDIEFIIMRPHTARAKNIRREVKEKNNG
(restricted) Ga0255045_1010762123300024528SeawaterMLSSYQRLKFKKDLAQKVAEELKEDIEFIIMRPHTARAKN
Ga0208920_102633123300025072MarineMLSSYQRLKFKKEAAVKAAEELKEDIEFIIMRPHTARAKNIRREVKEKHNG
Ga0208157_109040123300025086MarineMLSSYQRLKFKKDLAVKVAEELKEDIEFIIMRPHSKRAKAIRREVKEKNNG
Ga0208669_101614113300025099MarineMLSSYQRLKFKKEAAVKAAEELKEDIEFIIMRPHSKRAKAIRREVKEKNNG
Ga0208299_113462813300025133MarineMLSSYQRLKFKKEAAVKVAEELKEDIEFIIMRPHSKRAKNIRREVKEKHNG
Ga0209337_129059723300025168MarineMLSSYQRLKFKKEAAVKAAEELKENIEFIIMRPHSKRAKAIRREVKEKNNG
Ga0209151_118626413300025643MarineSNLNKMLSSYQRLKFKKDLAVKVAEELKEDIEFVILYPHTARAKNIRREVKEKNNG
Ga0208643_103941623300025645AqueousMLSSYQRLKFKKDLAVKVAEELKEDIEFIIMRPHTARAKNIRREVKERQNG
Ga0208160_115451623300025647AqueousMISSYQRLKVKMELAKQVADELKEDIEFVILRPYSSRAKNIRREVKEKEDYNG
Ga0208767_100751353300025769AqueousMLSSYQRLKFKKDLAVKAAEELKEDIEFIIMRPHSKRAKAIRREVKEKNNG
Ga0209193_109752613300025816Pelagic MarineLRKMLSSYQRLKFKKDLAVKVADELKEDIEFIIMRPHSKRAKAIRREVKEKNNG
Ga0209567_1027043023300025895Pelagic MarineMLSSYQRLKFKKDLAIKVAEELKEDIEFIIMRPHSKRAKAIRREVKEKNNG
(restricted) Ga0255054_1040873023300027856SeawaterMLSSYQRLKFKKDLAQKVAEELKEDIEFILCDHTQQEQRT
(restricted) Ga0233415_10000542313300027861SeawaterMLSSYQRLKFKKELAVKVAEELKEDIEFVILHPHTARAKNIRREVKDRNNG
(restricted) Ga0233415_1002078253300027861SeawaterMLSSYQRLKFKKDLAVKVAEELKEDIEFVILYPHTARAKNIRREVKEKQNG
(restricted) Ga0255053_1033267413300027868SeawaterMLSSYQRLKFKKDLAVKVAEELKEDIEFIIMRPHTARAKNIRREVKEKHNG
(restricted) Ga0233413_1008757313300027996SeawaterMLSSYQRLKFKKEAAQKAAEELKEDIEFIIMRPHTARAKNIRREVKEKH
Ga0307380_1075726023300031539SoilMLSSYQRLKFKKDLAVKVADELKEDIEFVILYPHTSRAKNI
Ga0307379_1016382623300031565SoilMLSSYQRLKFKKDLAVKVADELKEDIEFVILYPHTSRAKNIRREVKDKQNG
Ga0307379_1053239513300031565SoilLSSYQRLKFKKDLAVKVADELKEDIEFVILYPHTARAKNIRREVKEKQNG
Ga0307376_1039124523300031578SoilMLSSYQRLKFKKDLAVKVADELKEDIAFVILYPHTARAKNIRREVKEKQNG
Ga0307376_1093096713300031578SoilMLSSYQRLKFKKDLAVKVADELKEDIEFVILYPHTARAKN
Ga0307375_1051929413300031669SoilMLSSYQRLKFKKDLAVKVADELKEDIEFVILYPHTARAKNIRREVKE
Ga0307377_1055091513300031673SoilMLSSYQRLKFKKDLAVKVADELKEDIEFVILYPHTSRAKNIRREVKEKQNG
Ga0307377_1084126613300031673SoilMLSSYQRLKFKKDLAVKVADELKEDIEFVILYPHTARAK
Ga0314858_127159_518_6523300033742Sea-Ice BrineLKFKKDLAVKVADELKEDIEFVILYPHTARAKNIRREVKEKQNG

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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