NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F105503

Metagenome Family F105503

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105503
Family Type Metagenome
Number of Sequences 100
Average Sequence Length 74 residues
Representative Sequence MNNVIVFRSKLHSQQIANSLISKESELAVARSKAGWDFKEGEPNNPYLKNSLVWQAYEEEFFNIYMTGFYAEQGN
Number of Associated Samples 69
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 81.00 %
% of genes near scaffold ends (potentially truncated) 24.00 %
% of genes from short scaffolds (< 2000 bps) 82.00 %
Associated GOLD sequencing projects 58
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (63.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(50.000 % of family members)
Environment Ontology (ENVO) Unclassified
(69.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(62.000 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 61.33%    β-sheet: 5.33%    Coil/Unstructured: 33.33%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF04404ERF 46.00
PF00436SSB 10.00
PF07120DUF1376 8.00
PF14549P22_Cro 3.00
PF00959Phage_lysozyme 2.00
PF00145DNA_methylase 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG0629Single-stranded DNA-binding proteinReplication, recombination and repair [L] 10.00
COG2965Primosomal replication protein NReplication, recombination and repair [L] 10.00
COG3756Uncharacterized conserved protein YdaU, DUF1376 familyFunction unknown [S] 8.00
COG0270DNA-cytosine methylaseReplication, recombination and repair [L] 1.00

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms69.00 %
UnclassifiedrootN/A31.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001450|JGI24006J15134_10084609All Organisms → cellular organisms → Bacteria1177Open in IMG/M
3300001450|JGI24006J15134_10123303All Organisms → cellular organisms → Bacteria890Open in IMG/M
3300001450|JGI24006J15134_10239273All Organisms → cellular organisms → Bacteria528Open in IMG/M
3300002930|Water_102632All Organisms → cellular organisms → Bacteria → Proteobacteria3070Open in IMG/M
3300003269|JGI26112J46591_1031081All Organisms → cellular organisms → Bacteria651Open in IMG/M
3300004448|Ga0065861_1154713Not Available763Open in IMG/M
3300004460|Ga0066222_1288516Not Available534Open in IMG/M
3300004461|Ga0066223_1156782All Organisms → cellular organisms → Bacteria887Open in IMG/M
3300005747|Ga0076924_1048324All Organisms → cellular organisms → Bacteria8463Open in IMG/M
3300006029|Ga0075466_1006598All Organisms → cellular organisms → Bacteria → Proteobacteria4076Open in IMG/M
3300006191|Ga0075447_10107146All Organisms → cellular organisms → Bacteria964Open in IMG/M
3300006810|Ga0070754_10151311All Organisms → cellular organisms → Bacteria1109Open in IMG/M
3300006916|Ga0070750_10241874All Organisms → cellular organisms → Bacteria786Open in IMG/M
3300006947|Ga0075444_10208359All Organisms → cellular organisms → Bacteria787Open in IMG/M
3300007345|Ga0070752_1057147Not Available1768Open in IMG/M
3300008221|Ga0114916_1024759All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1960Open in IMG/M
3300008470|Ga0115371_10647128Not Available1213Open in IMG/M
3300009149|Ga0114918_10478313Not Available669Open in IMG/M
3300009172|Ga0114995_10418644Not Available734Open in IMG/M
3300009173|Ga0114996_10291790All Organisms → cellular organisms → Bacteria1279Open in IMG/M
3300009173|Ga0114996_10707993Not Available737Open in IMG/M
3300009173|Ga0114996_10866127All Organisms → cellular organisms → Bacteria649Open in IMG/M
3300009409|Ga0114993_10084061Not Available2511Open in IMG/M
3300009420|Ga0114994_10696524All Organisms → cellular organisms → Bacteria663Open in IMG/M
3300009422|Ga0114998_10395690All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage646Open in IMG/M
3300009432|Ga0115005_10081048Not Available2487Open in IMG/M
3300009432|Ga0115005_10594929All Organisms → cellular organisms → Bacteria885Open in IMG/M
3300009432|Ga0115005_10907849Not Available711Open in IMG/M
3300009508|Ga0115567_10240650All Organisms → cellular organisms → Bacteria1154Open in IMG/M
3300009512|Ga0115003_10121757All Organisms → cellular organisms → Bacteria1595Open in IMG/M
3300009512|Ga0115003_10577904All Organisms → cellular organisms → Bacteria656Open in IMG/M
3300009526|Ga0115004_10285846All Organisms → cellular organisms → Bacteria979Open in IMG/M
3300009526|Ga0115004_10297197Not Available958Open in IMG/M
3300009705|Ga0115000_10408076All Organisms → cellular organisms → Bacteria864Open in IMG/M
3300009706|Ga0115002_10229724All Organisms → cellular organisms → Bacteria1428Open in IMG/M
3300009785|Ga0115001_10184383All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1354Open in IMG/M
3300009786|Ga0114999_10736456Not Available734Open in IMG/M
3300009786|Ga0114999_10935611All Organisms → cellular organisms → Bacteria631Open in IMG/M
3300010883|Ga0133547_11150926All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica1487Open in IMG/M
3300010883|Ga0133547_11465465All Organisms → cellular organisms → Bacteria1284Open in IMG/M
3300010883|Ga0133547_11655583All Organisms → cellular organisms → Bacteria → Proteobacteria1192Open in IMG/M
3300010883|Ga0133547_11710628Not Available1168Open in IMG/M
3300017730|Ga0181417_1173798All Organisms → cellular organisms → Bacteria518Open in IMG/M
3300017772|Ga0181430_1019600Not Available2231Open in IMG/M
3300021365|Ga0206123_10108741All Organisms → cellular organisms → Bacteria1313Open in IMG/M
3300021442|Ga0206685_10001599Not Available6895Open in IMG/M
3300021958|Ga0222718_10010541All Organisms → cellular organisms → Bacteria6903Open in IMG/M
3300021958|Ga0222718_10116812All Organisms → cellular organisms → Bacteria1549Open in IMG/M
3300022065|Ga0212024_1000513All Organisms → cellular organisms → Bacteria3193Open in IMG/M
3300022068|Ga0212021_1000620All Organisms → cellular organisms → Bacteria3557Open in IMG/M
3300022217|Ga0224514_10349586All Organisms → cellular organisms → Bacteria545Open in IMG/M
3300024262|Ga0210003_1386786Not Available511Open in IMG/M
3300025071|Ga0207896_1001704All Organisms → cellular organisms → Bacteria4240Open in IMG/M
3300025168|Ga0209337_1050634Not Available2158Open in IMG/M
3300025168|Ga0209337_1070765All Organisms → cellular organisms → Bacteria1726Open in IMG/M
3300025168|Ga0209337_1115719Not Available1219Open in IMG/M
3300025168|Ga0209337_1178929All Organisms → cellular organisms → Bacteria886Open in IMG/M
3300027501|Ga0208948_1033422All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae1111Open in IMG/M
3300027668|Ga0209482_1193463All Organisms → cellular organisms → Bacteria568Open in IMG/M
3300027780|Ga0209502_10302429Not Available688Open in IMG/M
3300027788|Ga0209711_10116510All Organisms → cellular organisms → Bacteria1327Open in IMG/M
3300027801|Ga0209091_10043539All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Blastopirellula → unclassified Blastopirellula → Blastopirellula sp.2643Open in IMG/M
3300027801|Ga0209091_10406424All Organisms → cellular organisms → Bacteria615Open in IMG/M
3300027844|Ga0209501_10135382All Organisms → cellular organisms → Bacteria1649Open in IMG/M
3300027849|Ga0209712_10682236All Organisms → cellular organisms → Bacteria567Open in IMG/M
(restricted) 3300028045|Ga0233414_10411353All Organisms → cellular organisms → Bacteria630Open in IMG/M
3300028125|Ga0256368_1012812Not Available1432Open in IMG/M
3300028125|Ga0256368_1019221All Organisms → cellular organisms → Bacteria1200Open in IMG/M
3300028125|Ga0256368_1031254All Organisms → cellular organisms → Bacteria951Open in IMG/M
3300031141|Ga0308021_10215312Not Available736Open in IMG/M
3300031252|Ga0307494_1013266Not Available779Open in IMG/M
3300031519|Ga0307488_10073377All Organisms → cellular organisms → Bacteria2566Open in IMG/M
3300031519|Ga0307488_10185846All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1421Open in IMG/M
3300031519|Ga0307488_10308248All Organisms → cellular organisms → Bacteria1016Open in IMG/M
3300031519|Ga0307488_10603909Not Available636Open in IMG/M
3300031605|Ga0302132_10029417Not Available2936Open in IMG/M
3300031605|Ga0302132_10454686Not Available569Open in IMG/M
3300031621|Ga0302114_10107684All Organisms → cellular organisms → Bacteria → Proteobacteria1274Open in IMG/M
3300031623|Ga0302123_10239747All Organisms → cellular organisms → Bacteria897Open in IMG/M
3300031623|Ga0302123_10252217All Organisms → cellular organisms → Bacteria868Open in IMG/M
3300031623|Ga0302123_10423941All Organisms → cellular organisms → Bacteria610Open in IMG/M
3300031627|Ga0302118_10454336Not Available568Open in IMG/M
3300031629|Ga0307985_10083185All Organisms → cellular organisms → Bacteria1289Open in IMG/M
3300031630|Ga0308004_10405268Not Available504Open in IMG/M
3300031637|Ga0302138_10044986All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae1739Open in IMG/M
3300031638|Ga0302125_10249885Not Available539Open in IMG/M
3300031658|Ga0307984_1050049All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae1308Open in IMG/M
3300031675|Ga0302122_10288273All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage583Open in IMG/M
3300031676|Ga0302136_1025374Not Available2152Open in IMG/M
3300031676|Ga0302136_1090693All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica1002Open in IMG/M
3300031688|Ga0308011_10017033All Organisms → cellular organisms → Bacteria2499Open in IMG/M
3300031688|Ga0308011_10042479All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1469Open in IMG/M
3300031693|Ga0302139_10320419All Organisms → cellular organisms → Bacteria631Open in IMG/M
3300031696|Ga0307995_1282518Not Available558Open in IMG/M
3300032011|Ga0315316_11105324Not Available641Open in IMG/M
3300033742|Ga0314858_005060All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Blastopirellula → unclassified Blastopirellula → Blastopirellula sp.2374Open in IMG/M
3300033742|Ga0314858_015812All Organisms → cellular organisms → Bacteria1598Open in IMG/M
3300033742|Ga0314858_084512All Organisms → cellular organisms → Bacteria798Open in IMG/M
3300033742|Ga0314858_101401All Organisms → cellular organisms → Bacteria730Open in IMG/M
3300033742|Ga0314858_179178All Organisms → cellular organisms → Bacteria544Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine50.00%
Sea-Ice BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine8.00%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine8.00%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous6.00%
Sackhole BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine5.00%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine3.00%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine3.00%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface2.00%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine2.00%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater2.00%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water2.00%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater2.00%
Deep OceanEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean1.00%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater1.00%
Estuary WaterEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water1.00%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine1.00%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater1.00%
SedimentEnvironmental → Aquatic → Marine → Sediment → Unclassified → Sediment1.00%
SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment1.00%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001450Marine viral communities from the Pacific Ocean - LP-53EnvironmentalOpen in IMG/M
3300002930Estuary water microbial communities from Pearl Estuary, Zhujiang, ChinaEnvironmentalOpen in IMG/M
3300003269Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_08_M0_20EnvironmentalOpen in IMG/M
3300004448Marine viral communities from Newfoundland, Canada BC-1EnvironmentalOpen in IMG/M
3300004460Marine viral communities from Newfoundland, Canada BC-1EnvironmentalOpen in IMG/M
3300004461Marine viral communities from Newfoundland, Canada BC-2EnvironmentalOpen in IMG/M
3300005747Seawater microbial communities from Vineyard Sound, MA, USA - control T14EnvironmentalOpen in IMG/M
3300006029Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNAEnvironmentalOpen in IMG/M
3300006191Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNAEnvironmentalOpen in IMG/M
3300006810Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01EnvironmentalOpen in IMG/M
3300006916Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24EnvironmentalOpen in IMG/M
3300006947Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG017-DNAEnvironmentalOpen in IMG/M
3300007345Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30EnvironmentalOpen in IMG/M
3300008221Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_66EnvironmentalOpen in IMG/M
3300008470Sediment core microbial communities from Adelie Basin, Antarctica. Combined Assembly of Gp0136540, Gp0136562, Gp0136563EnvironmentalOpen in IMG/M
3300009149Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaGEnvironmentalOpen in IMG/M
3300009172Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154EnvironmentalOpen in IMG/M
3300009173Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134EnvironmentalOpen in IMG/M
3300009409Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150EnvironmentalOpen in IMG/M
3300009420Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152EnvironmentalOpen in IMG/M
3300009422Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138EnvironmentalOpen in IMG/M
3300009432Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean - Greenland ARC118M MetagenomeEnvironmentalOpen in IMG/M
3300009508Pelagic marine microbial communities from North Sea - COGITO_mtgs_120412EnvironmentalOpen in IMG/M
3300009512Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88EnvironmentalOpen in IMG/M
3300009526Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_90EnvironmentalOpen in IMG/M
3300009705Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128EnvironmentalOpen in IMG/M
3300009706Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86EnvironmentalOpen in IMG/M
3300009785Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130EnvironmentalOpen in IMG/M
3300009786Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126EnvironmentalOpen in IMG/M
3300010883western Arctic Ocean co-assemblyEnvironmentalOpen in IMG/M
3300017730Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 40 SPOT_SRF_2013-02-13EnvironmentalOpen in IMG/M
3300017772Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 53 SPOT_SRF_2014-04-10EnvironmentalOpen in IMG/M
3300021365Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160316_1EnvironmentalOpen in IMG/M
3300021442Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 200m 12015EnvironmentalOpen in IMG/M
3300021958Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27DEnvironmentalOpen in IMG/M
3300022065Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v2)EnvironmentalOpen in IMG/M
3300022068Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (v2)EnvironmentalOpen in IMG/M
3300022217Sediment microbial communities from San Francisco Bay, California, United States - SF_May12_sed_USGS_24EnvironmentalOpen in IMG/M
3300024262Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025071Marine viral communities from the Pacific Ocean - LP-36 (SPAdes)EnvironmentalOpen in IMG/M
3300025168Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)EnvironmentalOpen in IMG/M
3300027501Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_17_M020 (SPAdes)EnvironmentalOpen in IMG/M
3300027668Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNA (SPAdes)EnvironmentalOpen in IMG/M
3300027780Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_90 (SPAdes)EnvironmentalOpen in IMG/M
3300027788Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88 (SPAdes)EnvironmentalOpen in IMG/M
3300027801Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128 (SPAdes)EnvironmentalOpen in IMG/M
3300027844Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134 (SPAdes)EnvironmentalOpen in IMG/M
3300027849Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean - Greenland ARC118M Metagenome (SPAdes)EnvironmentalOpen in IMG/M
3300028045 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_10_MGEnvironmentalOpen in IMG/M
3300028125Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - SBEnvironmentalOpen in IMG/M
3300031141Marine microbial communities from water near the shore, Antarctic Ocean - #351EnvironmentalOpen in IMG/M
3300031252Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SW 0.2EnvironmentalOpen in IMG/M
3300031519Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2EnvironmentalOpen in IMG/M
3300031605Marine microbial communities from Western Arctic Ocean, Canada - CB9_32.1EnvironmentalOpen in IMG/M
3300031621Marine microbial communities from Western Arctic Ocean, Canada - AG5_SurfaceEnvironmentalOpen in IMG/M
3300031623Marine microbial communities from Western Arctic Ocean, Canada - CB21_32.1EnvironmentalOpen in IMG/M
3300031627Marine microbial communities from Western Arctic Ocean, Canada - AG5_33.1EnvironmentalOpen in IMG/M
3300031629Marine microbial communities from Ellis Fjord, Antarctic Ocean - #80EnvironmentalOpen in IMG/M
3300031630Marine microbial communities from water near the shore, Antarctic Ocean - #38EnvironmentalOpen in IMG/M
3300031637Marine microbial communities from Western Arctic Ocean, Canada - CBN3_32.1EnvironmentalOpen in IMG/M
3300031638Marine microbial communities from Western Arctic Ocean, Canada - CB4_surfaceEnvironmentalOpen in IMG/M
3300031658Marine microbial communities from Ellis Fjord, Antarctic Ocean - #78EnvironmentalOpen in IMG/M
3300031675Marine microbial communities from Western Arctic Ocean, Canada - CB21_SCMEnvironmentalOpen in IMG/M
3300031676Marine microbial communities from Western Arctic Ocean, Canada - CBN3_20mEnvironmentalOpen in IMG/M
3300031688Marine microbial communities from water near the shore, Antarctic Ocean - #177EnvironmentalOpen in IMG/M
3300031693Marine microbial communities from Western Arctic Ocean, Canada - CBN3_33.1EnvironmentalOpen in IMG/M
3300031696Marine microbial communities from Ellis Fjord, Antarctic Ocean - #262EnvironmentalOpen in IMG/M
3300032011Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 3416EnvironmentalOpen in IMG/M
3300033742Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - 2018 seawaterEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
JGI24006J15134_1008460933300001450MarineVSVIIFRGKHHNKRIVNSLLSKESVVVARIKAAWDFKDGDPDNTYLKNSPAWHAYQEEFFNIYMTGFFAEQEQK*
JGI24006J15134_1012330323300001450MarineVSVIIFRGKHHNKRIVNSLLSQESVFVARIKAAWDFKDGDPDNPYPKNSPAWNAYQEEFFKIYMDGFFAEQEQK*
JGI24006J15134_1023927323300001450MarineMNNVIVFRSKLHSQQIANSLISKESELASARSKAGWDFKEGEPNNPYLKNSPTWQAYEEEFFDIYMTGLYAEQGN*
Water_10263223300002930Estuary WaterMSNVIVFRSKLHSDKVANAIISKESELAAARSKAGWDFKDGEPNNPYPKNSLTWQAYEEEFFNIYMTGLYAEQGKQNDWSI*
JGI26112J46591_103108123300003269MarineVSVIIFRGKHHNKRIVNSLLSKESEFVARIKAAWDFKDGDPDNPYPKNSPAWNAYQEEFFKIYMDGFYAEQEQK*
Ga0065861_115471323300004448MarineMNNVIVFRSKLHSHQIANSLISKESELAFARSKAGWDFKEGEPNNPYLKNSLTWQAYEEEFFNIYMNGLYAEQGN*
Ga0066222_128851623300004460MarineMNNVIVFRSKLHSHQIANSVISKESELAVARSKAGWDFKEGEPNNPYLKNSLTWQAYEEEFFNIYMNGLYAEQGN*
Ga0066223_115678223300004461MarineMNNVIVFRSKLHSQQIANSLISKESELAAARSKAGWDFKEGEPNNPYLKNSLTWQAYEEEFFNIYMNGLYAEQGQ*
Ga0076924_1048324103300005747MarineMSNVIVFRSKLHSDKVANAIISKESELAAARSKAGWDFKDGEPNNPYPKNSLTWQAYEEEFFDIYMTGLYAEQGQ*
Ga0075466_100659883300006029AqueousMSNVIVFRSKLHSDKVANAIISKESELAAARSKAGWDFKDGEPNNPYPKNSLTWQAYEEEFFNIYMTGLYAEQGNLLND*
Ga0075447_1010714623300006191MarineMSNVIVFRSKLHSQQIAESIISKESELASARSKAGWDFKEGEPNNPYLKNSPTWQAYEEEFFDIYMTGLYAEQGK*
Ga0070754_1015131123300006810AqueousMNNVIVFRSKLHSQQIANSLISKESELAVARSKAGWDFKEGEPNNPYIKNSLVWQAYEEEFFDIYMTGLYAEQGQ*
Ga0070750_1024187423300006916AqueousMSNVIVFRSKLHSDKVANAIISKESELAAARSKAGWDFKDGEPNNPYPKNSLTWQAYEEEFFNIYMTGLYAEQGNLND*
Ga0075444_1020835913300006947MarineYTLMNNLIVFRSKLHSQQIAESIIFKESELASARSKAGWDFKEGEPNNPYVKNSLPWQAYEEEFFNIYMNGLYAEQRTK*
Ga0070752_105714743300007345AqueousMNNVIVFRSNLHSQQIANSLISKESELAVARSKAGWDFKEGEPNNPYIKNSLVWQAYEEEFFDIYMTGLYAEQGQ*
Ga0114916_102475953300008221Deep OceanMNNLIVFRSKLHSQQIAESIIFKESELASARSKAGWDFKEGEPNNPYVKNSPPWQAYEEEFFNIYMNGLYAEQRTK*
Ga0115371_1064712823300008470SedimentMSNVIVFRSKLHSQQIAESIISKESELASARSKAGWDFKEGEPNNPYLKNSPTWQAYEEEFFDIYMTGLYAEQGN*
Ga0114918_1047831323300009149Deep SubsurfaceMNNVIVFRSKLHSQQIANSIISKESELAVARSKAGWDFKEGEPNNPYLKNSLVWQAYEEEFFNIYMNGLYAEQGQ*
Ga0114995_1041864413300009172MarineMNNVIVFRSKLHSQQIANSLISKESELAAARSKAGWDFKEGEPNNPYLKNSLTWQAYEEEFF
Ga0114996_1029179023300009173MarineMSNVIVFRSKLHSEQIADSLISKESELASARIKAAWDFKDGDPDNNYLKNSPAWNAYQEEFFKIYMDGFYAEQGK*
Ga0114996_1070799313300009173MarineMSNVIVFRSKLHSQQIADSLISKESELAVARIKAGWDFKEGDPDNNYLKNSPAWNAYQEEFF
Ga0114996_1086612723300009173MarineMSNVIVFRSKLHSQQIADSLISKESELASARIKAAWDFKDGDPDNTYLKNSPAWHAYQEEFFNIYMTGFYAEQGK*
Ga0114993_1008406163300009409MarineMSNVIVFRSKLHSQQIADSLISKESELAVARIKAAWDFKEGDPDNIYHKNSPAWHAYQEEFFNIYMTGFDAEQGK*
Ga0114994_1069652423300009420MarineMNVILFRSKIHSQQIANAIISKESELASARSKAGWDFKEGEPDNPYLKNSLVWQAYEEEFFNIYMTGLYAEQGN*
Ga0114998_1039569023300009422MarineMNNVIVFRSKLHSDQIANSLISKESELASARSKAGWDFKEGEPNNPYIKNSLVWQAYEEEFFNIYMNGFYAEQGDR*
Ga0115005_1008104873300009432MarineMNNVIVFRSKLHSQQIANSLISKESELAVARSKAGWDFKEGEPNNPYLKNSPTWQAYEEEFFDIYMTGLYAEQGN*
Ga0115005_1059492923300009432MarineMNNVIVFRSKLHSHQIANSLISKESELASARSKAGWDFKEGEPDNPYLKNSPTWQAYEEEFFDIYMNGFYAEQGN*
Ga0115005_1090784913300009432MarineMNNVIVFRSKLHSQQIANSLISKESELAVARSKAGWDFKEGEPNNPYIKNSLVWQAYEEEFFNIYMNGFYAEQGQ*
Ga0115567_1024065023300009508Pelagic MarineMNNVIFFRSKLHSDKVANAIISKESELAAARSKAGWDFKDGEPNNPYPKNSLTWQAYQEEFFNIYMTGLYAEQGKLND*
Ga0115003_1012175743300009512MarineMNNVIVFRSKLHSQQIANSLISKESELAAARSKAGWDFKEGEPNNPYLKNSLVWQAYEEEFFNIYMNGLYAEQGQ*
Ga0115003_1057790423300009512MarineMNNVIVFRSKLHSQQIANSLISKESELAVARSKAGWDFKEGEPNNPYLKNSPTWQAYEEEFFDIYMNGFYAEQGQ*
Ga0115004_1028584623300009526MarineMNNVIVFRSKLHSQQIANSLISKESELAAARSKAGWDFKEGEPNNPYLKNSPTWQAYEEEFFDIYMSGFYAEQGQ*
Ga0115004_1029719743300009526MarineMNNVIVFRSKLHSQQIANSLISKESDLAVARSKAGWDFKEGEPNNPYLKNSLVWQAYEEEFFNIYMNGLYAE
Ga0115000_1040807623300009705MarineMNNVIVFRSKLHSDQIANSIISKESELASARSKAGWDFKEGEPNNPYLKNSLTWQAYEEEFFNIYMNGLYAEQGQ*
Ga0115002_1022972433300009706MarineMSNVIVFRSKLHSEQIADSLISKESELASARIKAAWDFKDGDPDNNYLKNSPAWHAYQEEFFKIYMDGFYAEQGK*
Ga0115001_1018438353300009785MarineMNNVIVFRSKLHSQQIANSLISKESELAAARSKAGWDFKEGEPNNPYLKNSLVWQAYEEEFFNIYMNGFYAEQGDR*
Ga0114999_1073645613300009786MarineMNVILFRSKIHSQQIANAIISKESELASARSKAGWDFKEGEPDNPYLKNSPTWQAYEEEFFNIYMNG*
Ga0114999_1093561123300009786MarineMSNVIVFRSKLHSQQIADSLISKESELAVARIKAAWDFKDGDPDNNYLKNSPAWNAYQEEFFKIYMDGFYAEQGK*
Ga0133547_1115092623300010883MarineMNNVIVFRSKLHSDQIANSLISKESDLAVARSKAGWDFKEGEPNNPYLKNSPTWQAYEEEFFDIYMTGLYAEQGDQ*
Ga0133547_1146546543300010883MarineMNNVIVFRSKLHSQQIANSLISKESELAVARSKAGWDFKEGEPNNPYIKNSLVWQAYEEEFFNIYMTGFYAEQGQ*
Ga0133547_1165558333300010883MarineFRKGLAMSNVIVFRSKLHSEQIADSLISKESELASARIKAAWDFKDGDPDNNYLKNSPAWHAYQEEFFKIYMDGFYAEQGK*
Ga0133547_1171062823300010883MarineMNNVIVFRSKLHSQQIANSLISKESDLAVARSKAGWDFKEGEPNNPYLKNSPTWQAYEEEFFDIYMSGFYAEQGQ*
Ga0181417_117379823300017730SeawaterVSVIIFRGKHHNKRIVNSLLSKESVFVAKIKAAWDFKDGDPDNTYLKNSPAWHAYQEEFFKIYMDGFFAEQEQK
Ga0181430_101960053300017772SeawaterVSVIIFRGKHHNKRIVNSLLSQESVFVARIKAAWDFKDGDPDNPYPKNSPAWNAYQEEFFKIYMDGFYAEQEQK
Ga0206123_1010874133300021365SeawaterMSNVIVFRSKLHSDKVANAIISKESELAAARSKAGWDFKDGEPNNPYPKNSLTWQAYQEEFFNIYMTGLYAEQGNLNDWSI
Ga0206685_10001599113300021442SeawaterVSVIIFRGKHHNKRIVNSLLSKESEFVARIKAAWDFKDGDPDNPYPKNSPAWNAYQEEFFKIYMDGFYAEQEQK
Ga0222718_1001054183300021958Estuarine WaterMSNVIVFRSKLHSDKVANAIISKESELAAARSKAGWDFKDGEPNNPYPKNSLTWQAYEEEFFNIYMTGLYAEQGNLND
Ga0222718_1011681233300021958Estuarine WaterMSNVIVFRSKLHSDKVANAIISKESELAVARSKAGWDFKDGEPNNPYLKNSLTWQAYEDEFFNIYMTGLYSEQGNLDD
Ga0212024_100051313300022065AqueousMSNVIIFRSKLHSDKVANAIISKESELAAARSKAGWDFKDGEPNNPYPKNSLTWQAYEEEFFNIYMTGLYAEQGNLLND
Ga0212021_100062063300022068AqueousMSNVIVFRSKLHSDKVANAIISKESELAAARSKAGWDFKDGEPNNPYPKNSLTWQAYEEEFFNIYMTGLYAEQGNLLND
Ga0224514_1034958623300022217SedimentMNNVIVFRSKLHSDKVANAIISKESELAAARSKAGWDFKDGEPNNPYPKNSLTWQAYEEEFFNIYMTGLYAEQGNLND
Ga0210003_138678613300024262Deep SubsurfaceMNNVIVFRSKLHSQQIANSIISKESELAVARSKAGWDFKEGEPNNPYLKNSLVWQAYEEEFFNIYM
Ga0207896_100170423300025071MarineMNNVIVFRSKLHSQQIANSLISKESELASARSKAGWDFKEGEPNNPYLKNSPTWQAYEEEFFDIYMTGLYAEQGN
Ga0209337_105063413300025168MarineMNNVIVFRSKLHSDQIANSIISKESELAVARIKAAWDFKDGDPDNNYLKNSPAWNAYQEEFFKIYMDGFYAEQGN
Ga0209337_107076523300025168MarineMNNVIVFRSKLHSQQIADSLISKESELAVARIKAGWDFKEGDPDNNYLKNSPAWNAYQEEFFKIYMDGFYAEQGQ
Ga0209337_111571943300025168MarineVSVIIFRGKHHNKRIVNSLLSKESVVVARIKAAWDFKDGDPDNTYLKNSPAWHAYQEEFFNIYMTGFFAEQEQK
Ga0209337_117892913300025168MarineHRGRRTRCLGGLVVSVIIFRGKHHNKRIVNSLLSKESVFVAKIKAAWDFKDGDPDNTYLKNSPAWHAYQEEFFKIYMDGFFAEQEQK
Ga0208948_103342213300027501MarineVSVIIFRGKHHNKRIVNSLLSKESEFVARIKAAWDFKDGDPDNPYPKNSPAWNAYQEEFFKIYM
Ga0209482_119346323300027668MarineMSNVIVFRSKLHSQQIAESIISKESELASARSKAGWDFKEGEPNNPYLKNSPTWQAYEEEFFDIYMTGLYAEQGN
Ga0209502_1030242933300027780MarineMNNVIVFRSKLHSDQIANSIISKESELASARSKAGWDFKEGEPNNPYLKNSLVWQAYEEEFFNIYMNGLYAE
Ga0209711_1011651023300027788MarineMNNVIVFRSKLHSQQIANSLISKESELAAARSKAGWDFKEGEPNNPYLKNSLVWQAYEEEFFDIYMNGFYAEQGQ
Ga0209091_1004353913300027801MarineMNNVIVFRSKLHSQQIANSLISKESELAVARSKAGWDFKEGEPNNPYIKNSLVWQAYEEEFFDIYMTGLYAEQGN
Ga0209091_1040642413300027801MarineHSDQIANSIISKESELASARSKAGWDFKEGEPNNPYLKNSLTWQAYEEEFFNIYMNGLYAEQGQ
Ga0209501_1013538243300027844MarineMSNVIVFRSKLHSEQIADSLISKESELASARIKAAWDFKDGDPDNNYLKNSPAWHAYQEEFFKIYMDGFYAEQGK
Ga0209712_1068223623300027849MarineMNNVIVFRSKLHSHQIANSLISKESELASARSKAGWDFKEGEPDNPYLKNSPTWQAYEEEFFDIYMNGFYAEQGN
(restricted) Ga0233414_1041135313300028045SeawaterMNVILFRSKIHSQQIANSLISKESELASARSKAGWDFNQGEPNNPYIKNSPTWQAYEEEFFNIYMTGLYAEQGN
Ga0256368_101281263300028125Sea-Ice BrineMNVILFRSKIHSQQIANAIISKESELASARSKAGWDFKEGEPNNPYLKNSLTWQAYEEEFFNIYMNGFYAEQGN
Ga0256368_101922113300028125Sea-Ice BrineMNNVIVFRSKLHSDQIANSIISKESELASARSKAGWDFKEGEPNNPYLKNSLTWQAYEEEFFNIYMNGFYAEQGN
Ga0256368_103125433300028125Sea-Ice BrineGQQIANSLISKESELAVAKSKAGWDFKEGEPNNPYLKNSPTWQAYEEEFFDIYMSGFYAEQGQ
Ga0308021_1021531223300031141MarineMSNVIVFRSKLHSQQIAESIISKESELASARSKAGWDFKEGEPNNPYVKNSLPWQAYEEEFFNIYMNGLYAEQRTK
Ga0307494_101326613300031252Sackhole BrineMNNVIVFRSKLHSDQIANSIISKESELASARSKAGWDFKEGEPNNPYLKNSLTWQAYEEEFFLL
Ga0307488_1007337763300031519Sackhole BrineMNNVIVFRSKLHSQQIANSLISKESELAVAKSKAGWDFKEGEPNNPYLKNSPTWQAYEEEFFDIYMSGFYAEQGQ
Ga0307488_1018584623300031519Sackhole BrineMNNVIVFRSKLHSQQIANSLISKESELAVARSKAGWDFKEGEPNNPYIKNSLVWQAYEEEFFNIYMTGFYAEQGQ
Ga0307488_1030824823300031519Sackhole BrineMNNVIVFRSKLHSDQIANSIISKESELASARSKAGWDFKEGEPDNPYLKNSLVWQAYEEEFFNIYMTGFYAEQGN
Ga0307488_1060390923300031519Sackhole BrineMNVILFRSKIHSQQIANAIISKESELASARSKAGWDFKEGEPNNPYLKNSPTWQAYEEEFFNIYMTGFYAEQGN
Ga0302132_1002941783300031605MarineVSNVIVFRSKLHSQQIADSLISKESELAVARIKAGWHFKEGEPNNPYLKNSPAWNAYQEEFFNIYMTGLYAEQGQ
Ga0302132_1045468623300031605MarineMSNVIVFRSKLHSEQIADSLISKESELASARIKAAWDFKEGDPDNNYLKNSPAWHAYQEEFFNIYMTGFYAEQGK
Ga0302114_1010768413300031621MarineMNNVIVFRSKLHSQQIANSLISKESELASARSKAGWDFKEGEPNNPYLKNSPTWQAYEEEFFDIYMTGLYAEQGDQ
Ga0302123_1023974723300031623MarineMSNVIVFRSKLHSEQIADSLISKESELAVARIKAAWDFKDGDPDNTYLKNSPAWHAYQEEFFNIYMTGLYAEQGK
Ga0302123_1025221723300031623MarineMSNVIVFRSKLHSQQIADSLISKESELAVARIKAGWDFKEGDPDNNYLKNSPAWHAYQEEFFNIYMTGFYAEQGK
Ga0302123_1042394113300031623MarineVFRSKLHSQQIADSLISKESELAVARIKAAWDFKEGDPDNNYLKNSPAWHAYQEEFFNIYMTGFYAEQGK
Ga0302118_1045433623300031627MarineMSNVIVFRSKLHSQQIADSLISKESELASARIKAAWDFKDGDPDNTYLKNSPAWHAYQEEFFNIYMTGFYAEQGK
Ga0307985_1008318513300031629MarineGRFLSINFSREGDQMNVILFRSKIHSQQIANAIISKESELASARSKAGWDFKEGEPNNPYIKNSPTWQAYEEEFFNIYMTGFYAEQGN
Ga0308004_1040526823300031630MarineMNNLIVFRSKLHSQQIAESIIFKESELASARSKAGWDFKEGEPNNPYFKNSLPWQAYEEEFFNIYMTGL
Ga0302138_1004498623300031637MarineMNNVIVFRSKLHSQQIANSLISKESELASARSKAGWDFKEGEPNNPYIKNSLVWQAYEEEFFNIYMNGFYAEQGQ
Ga0302125_1024988513300031638MarineMNNVIVFRSKLHSQQIANSLISKESELAVARSKAGWDFKEGEPNNPYLKNSPTWQAYEEEFFDIYMNG
Ga0307984_105004943300031658MarineMNNLIVFRSKLHSQQIAESIIFKESELASARSKAGWDFKEGEPNNPYVKNSLPWQAYEEEFFNIYMTGLYAEQGQ
Ga0302122_1028827323300031675MarineMNNVIVFRSKLHSQQIANSLISKESELASARSKAGWDFKEGEPNNPYIKNSLVWQAYEEEFFNIYMNGFYAEQGDR
Ga0302136_102537453300031676MarineMNNVIVFRSKLHSQQIANSLISKESELAVARSKAGWDFKEGEPNNPYLKNSPTWQAYEEEFFDIYMNGFYAEQGQ
Ga0302136_109069313300031676MarineIVFRSKLHSQQIANSLISKESELASARSKAGWDFKEGEPNNPYIKNSLVWQAYEEEFFNIYMNGFYAEQGDR
Ga0308011_1001703343300031688MarineMNNVIVFRSKLHNKQIANSLISKESELAVARSKAGWDFKEGEPNNPYLKNSLTWQAYEEEFFNIYMTGLYAEQRDQ
Ga0308011_1004247943300031688MarineMNNLIVFRSKLHSQQIAESIIFKESELASARSKAGWDFKEGEPNNPYVKNSLPWQAYEEEFFNIYMNGLY
Ga0302139_1032041923300031693MarineIVFRSKLHSQQIADSLISKESELASARIKAAWDFKDGDPDNTYLKNSPAWHAYQEEFFNIYMTGFYAEQGN
Ga0307995_128251823300031696MarineMDNLIVFRSKLHSQQIAESIIFKESELASARSKAGWDFKEGEPNNPYVKNSLPWQAYEEEFFNIYMNGL
Ga0315316_1110532413300032011SeawaterVSVIIFRGKHHNKRIANSLLSQESVFVARIKAAWDFKDGDPDNPYSKNSPAWHAYQEEFFKIYMDGFYAEQEQK
Ga0314858_005060_2119_23463300033742Sea-Ice BrineMNNVIVFRSKLHSDQIANSLISKESELAVARSKAGWDFKEGEPNNPYIKNSLVWQAYEEEFFNIYMNGFYAEQGQ
Ga0314858_015812_295_5193300033742Sea-Ice BrineMNVILFRSKIHSQQIANAIISKESELASARSKAGWDFKEGEPDNPYLKNSPTWQAYEEEFFNIYMTGFYAEQGN
Ga0314858_084512_495_7223300033742Sea-Ice BrineMNNVIVFRSKLHSQQIANSLISKESELAVARSKAGWDFKEGEPNNPYLKNSLVWQAYEEEFFNIYMTGFYAEQGN
Ga0314858_101401_529_7293300033742Sea-Ice BrineRGKRREIANAIISKESELASARSKAGWDFKEGEPNNPYLKNSLTWQAYEEEFFNIYMNGFYAEQGN
Ga0314858_179178_159_3833300033742Sea-Ice BrineMNVILFRSKIHSQQIANAIISKESELASARSKAGWDFKEGEPDNPYLKNSLVWQAYEEEFFNIYMTGFYAEQGN

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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