NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F105509

Metagenome Family F105509

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105509
Family Type Metagenome
Number of Sequences 100
Average Sequence Length 60 residues
Representative Sequence KIGDLVLNDFGETAILLTEPRLEDDPEDCSPYYVADVFLTEFGCKDVWITDDVEVISESR
Number of Associated Samples 56
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 84.00 %
% of genes near scaffold ends (potentially truncated) 23.00 %
% of genes from short scaffolds (< 2000 bps) 89.00 %
Associated GOLD sequencing projects 45
AlphaFold2 3D model prediction Yes
3D model pTM-score0.70

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (47.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(73.000 % of family members)
Environment Ontology (ENVO) Unclassified
(95.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(91.000 % of family members)


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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 32.95%    Coil/Unstructured: 67.05%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.70
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF07728AAA_5 2.00
PF04964Flp_Fap 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG3847Flp pilus assembly protein, pilin FlpExtracellular structures [W] 1.00

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms56.00 %
UnclassifiedrootN/A44.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001740|JGI24656J20076_1011029Not Available1182Open in IMG/M
3300002484|JGI25129J35166_1038901All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium965Open in IMG/M
3300002514|JGI25133J35611_10178198Not Available568Open in IMG/M
3300002514|JGI25133J35611_10201796Not Available521Open in IMG/M
3300002519|JGI25130J35507_1008131All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales → Phycisphaerales bacterium2723Open in IMG/M
3300002519|JGI25130J35507_1061937All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium721Open in IMG/M
3300002519|JGI25130J35507_1070481Not Available661Open in IMG/M
3300002760|JGI25136J39404_1024518All Organisms → Viruses → Predicted Viral1100Open in IMG/M
3300005425|Ga0066859_10219518Not Available558Open in IMG/M
3300005521|Ga0066862_10232532All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium605Open in IMG/M
3300005604|Ga0066852_10198226Not Available691Open in IMG/M
3300006190|Ga0075446_10147464All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium672Open in IMG/M
3300006736|Ga0098033_1111837Not Available774Open in IMG/M
3300006736|Ga0098033_1195409Not Available561Open in IMG/M
3300006738|Ga0098035_1191481Not Available685Open in IMG/M
3300006738|Ga0098035_1194899Not Available677Open in IMG/M
3300006738|Ga0098035_1248126Not Available586Open in IMG/M
3300006738|Ga0098035_1304118Not Available519Open in IMG/M
3300006750|Ga0098058_1021229All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium1907Open in IMG/M
3300006750|Ga0098058_1043341Not Available1282Open in IMG/M
3300006751|Ga0098040_1016380All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium2462Open in IMG/M
3300006753|Ga0098039_1062517Not Available1295Open in IMG/M
3300006753|Ga0098039_1085854All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium1087Open in IMG/M
3300006754|Ga0098044_1137146All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium986Open in IMG/M
3300006754|Ga0098044_1158899Not Available903Open in IMG/M
3300006754|Ga0098044_1347459All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium563Open in IMG/M
3300006789|Ga0098054_1228222Not Available675Open in IMG/M
3300006793|Ga0098055_1300979Not Available599Open in IMG/M
3300006927|Ga0098034_1184060Not Available585Open in IMG/M
3300007760|Ga0105018_1064481All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium1435Open in IMG/M
3300008050|Ga0098052_1132966All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bacteriovoracales → Halobacteriovoraceae → Halobacteriovorax → unclassified Halobacteriovorax → Halobacteriovorax sp.994Open in IMG/M
3300008050|Ga0098052_1392255Not Available517Open in IMG/M
3300008954|Ga0115650_1182851All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium1318Open in IMG/M
3300009130|Ga0118729_1007134All Organisms → cellular organisms → Bacteria9558Open in IMG/M
3300009173|Ga0114996_10097715All Organisms → Viruses → Predicted Viral2500Open in IMG/M
3300009173|Ga0114996_10274186Not Available1329Open in IMG/M
3300009173|Ga0114996_10409143All Organisms → Viruses → Predicted Viral1039Open in IMG/M
3300009786|Ga0114999_10172914All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium1812Open in IMG/M
3300009786|Ga0114999_10943799Not Available627Open in IMG/M
3300010151|Ga0098061_1103497All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium1059Open in IMG/M
3300010151|Ga0098061_1289304All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium565Open in IMG/M
3300010155|Ga0098047_10338381All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium566Open in IMG/M
3300010155|Ga0098047_10409234Not Available507Open in IMG/M
3300010883|Ga0133547_12085655All Organisms → Viruses → Predicted Viral1034Open in IMG/M
3300012950|Ga0163108_10615835All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium702Open in IMG/M
3300012950|Ga0163108_10697660All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium656Open in IMG/M
3300013108|Ga0171648_104610All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium4866Open in IMG/M
3300017702|Ga0181374_1019430All Organisms → Viruses → Predicted Viral1213Open in IMG/M
3300017703|Ga0181367_1038869All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium849Open in IMG/M
3300017775|Ga0181432_1037998All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium1315Open in IMG/M
3300017775|Ga0181432_1049369All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium1176Open in IMG/M
3300017775|Ga0181432_1082204Not Available942Open in IMG/M
3300017775|Ga0181432_1100647Not Available860Open in IMG/M
3300017775|Ga0181432_1139067All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium741Open in IMG/M
3300017775|Ga0181432_1160154Not Available695Open in IMG/M
3300017775|Ga0181432_1209086Not Available612Open in IMG/M
3300017775|Ga0181432_1237759All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium574Open in IMG/M
3300017775|Ga0181432_1281979Not Available526Open in IMG/M
3300021442|Ga0206685_10143636Not Available797Open in IMG/M
(restricted) 3300024520|Ga0255047_10081691Not Available1665Open in IMG/M
(restricted) 3300024520|Ga0255047_10618069Not Available542Open in IMG/M
3300025052|Ga0207906_1044174All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium603Open in IMG/M
3300025078|Ga0208668_1017176All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales → Phycisphaerales bacterium1495Open in IMG/M
3300025082|Ga0208156_1015209All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium1796Open in IMG/M
3300025082|Ga0208156_1087655Not Available573Open in IMG/M
3300025096|Ga0208011_1034259All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium1232Open in IMG/M
3300025097|Ga0208010_1012952All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium2130Open in IMG/M
3300025097|Ga0208010_1038185All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium1100Open in IMG/M
3300025103|Ga0208013_1035289All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium1411Open in IMG/M
3300025109|Ga0208553_1049622All Organisms → Viruses → Predicted Viral1040Open in IMG/M
3300025109|Ga0208553_1110594Not Available630Open in IMG/M
3300025112|Ga0209349_1007169All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium4610Open in IMG/M
3300025112|Ga0209349_1190118Not Available529Open in IMG/M
3300025114|Ga0208433_1138578Not Available580Open in IMG/M
3300025122|Ga0209434_1004925All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales → Phycisphaerales bacterium5484Open in IMG/M
3300025122|Ga0209434_1076537Not Available987Open in IMG/M
3300025122|Ga0209434_1129799Not Available698Open in IMG/M
3300025125|Ga0209644_1096329Not Available699Open in IMG/M
3300025125|Ga0209644_1119940Not Available626Open in IMG/M
3300025131|Ga0209128_1010716All Organisms → Viruses → Predicted Viral4576Open in IMG/M
3300025131|Ga0209128_1066298Not Available1255Open in IMG/M
3300025131|Ga0209128_1091899All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium995Open in IMG/M
3300025131|Ga0209128_1122181Not Available811Open in IMG/M
3300025131|Ga0209128_1229780All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium506Open in IMG/M
3300025141|Ga0209756_1037575All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales → Phycisphaerales bacterium2509Open in IMG/M
3300025141|Ga0209756_1256065All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium639Open in IMG/M
3300025873|Ga0209757_10027778All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium1601Open in IMG/M
3300025873|Ga0209757_10060814All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium1119Open in IMG/M
3300025873|Ga0209757_10244962All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium569Open in IMG/M
3300027838|Ga0209089_10078980All Organisms → Viruses → Predicted Viral2062Open in IMG/M
3300027844|Ga0209501_10307200All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium972Open in IMG/M
3300028018|Ga0256381_1013873All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium1318Open in IMG/M
3300028018|Ga0256381_1031240Not Available856Open in IMG/M
3300031606|Ga0302119_10091877All Organisms → Viruses → Predicted Viral1240Open in IMG/M
3300031646|Ga0302133_10220542All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium927Open in IMG/M
3300032032|Ga0315327_10171129All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium1359Open in IMG/M
3300032032|Ga0315327_10954325Not Available513Open in IMG/M
3300032048|Ga0315329_10276401Not Available890Open in IMG/M
3300032048|Ga0315329_10681866Not Available543Open in IMG/M
3300032278|Ga0310345_10482914All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium1180Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine73.00%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater9.00%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater5.00%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine4.00%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater2.00%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater2.00%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater2.00%
Deep OceanEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean1.00%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater1.00%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine1.00%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001740Marine viral communities from the Deep Pacific Ocean - MSP-114EnvironmentalOpen in IMG/M
3300002484Marine viral communities from the Pacific Ocean - ETNP_2_130EnvironmentalOpen in IMG/M
3300002514Marine viral communities from the Pacific Ocean - ETNP_6_85EnvironmentalOpen in IMG/M
3300002519Marine viral communities from the Pacific Ocean - ETNP_2_300EnvironmentalOpen in IMG/M
3300002760Marine viral communities from the Pacific Ocean - ETNP_6_1000EnvironmentalOpen in IMG/M
3300005425Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV199EnvironmentalOpen in IMG/M
3300005521Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV255EnvironmentalOpen in IMG/M
3300005604Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV63EnvironmentalOpen in IMG/M
3300006190Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG058-DNAEnvironmentalOpen in IMG/M
3300006736Marine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaGEnvironmentalOpen in IMG/M
3300006738Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaGEnvironmentalOpen in IMG/M
3300006750Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaGEnvironmentalOpen in IMG/M
3300006751Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaGEnvironmentalOpen in IMG/M
3300006753Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaGEnvironmentalOpen in IMG/M
3300006754Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaGEnvironmentalOpen in IMG/M
3300006789Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaGEnvironmentalOpen in IMG/M
3300006793Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaGEnvironmentalOpen in IMG/M
3300006927Marine viral communities from the Subarctic Pacific Ocean - 2_ETSP_OMZ_AT15125 metaGEnvironmentalOpen in IMG/M
3300007760Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 250-2.7um, replicate aEnvironmentalOpen in IMG/M
3300008050Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaGEnvironmentalOpen in IMG/M
3300008954Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 247m, 250-2.7umEnvironmentalOpen in IMG/M
3300009130Combined Assembly of Gp0139511, Gp0139512EnvironmentalOpen in IMG/M
3300009173Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134EnvironmentalOpen in IMG/M
3300009786Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126EnvironmentalOpen in IMG/M
3300010151Marine viral communities from the Subarctic Pacific Ocean - 22_ETSP_OMZ_AT15343 metaGEnvironmentalOpen in IMG/M
3300010155Marine viral communities from the Subarctic Pacific Ocean - 12_ETSP_OMZ_AT15267 metaGEnvironmentalOpen in IMG/M
3300010883western Arctic Ocean co-assemblyEnvironmentalOpen in IMG/M
3300012950Marine microbial communities from the Central Pacific Ocean - Fk160115 155m metaGEnvironmentalOpen in IMG/M
3300013108Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 103m, 250-2.7um, replicate bEnvironmentalOpen in IMG/M
3300017702Marine viral communities from the Subarctic Pacific Ocean - Lowphox_10 viral metaGEnvironmentalOpen in IMG/M
3300017703Marine viral communities from the Subarctic Pacific Ocean - ?Lowphox_02 viral metaGEnvironmentalOpen in IMG/M
3300017775Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17EnvironmentalOpen in IMG/M
3300021442Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 200m 12015EnvironmentalOpen in IMG/M
3300024520 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_1EnvironmentalOpen in IMG/M
3300025052Marine viral communities from the Pacific Ocean - LP-37 (SPAdes)EnvironmentalOpen in IMG/M
3300025078Marine viral communities from the Subarctic Pacific Ocean - 18_ETSP_OMZAT15316 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025082Marine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025096Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025097Marine viral communities from the Subarctic Pacific Ocean - 2_ETSP_OMZ_AT15125 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025103Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025109Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025112Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)EnvironmentalOpen in IMG/M
3300025114Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025122Marine viral communities from the Pacific Ocean - ETNP_2_300 (SPAdes)EnvironmentalOpen in IMG/M
3300025125Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)EnvironmentalOpen in IMG/M
3300025131Marine viral communities from the Pacific Ocean - ETNP_6_100 (SPAdes)EnvironmentalOpen in IMG/M
3300025141Marine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)EnvironmentalOpen in IMG/M
3300025873Marine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes)EnvironmentalOpen in IMG/M
3300027838Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)EnvironmentalOpen in IMG/M
3300027844Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134 (SPAdes)EnvironmentalOpen in IMG/M
3300028018Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 1600mEnvironmentalOpen in IMG/M
3300031606Marine microbial communities from Western Arctic Ocean, Canada - AG5_TmaxEnvironmentalOpen in IMG/M
3300031646Marine microbial communities from Western Arctic Ocean, Canada - CB9_33.1EnvironmentalOpen in IMG/M
3300032032Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 32315EnvironmentalOpen in IMG/M
3300032048Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 32315EnvironmentalOpen in IMG/M
3300032278Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MGEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
JGI24656J20076_101102953300001740Deep OceanVKIGDLVLNDFGETAILLTEPRLEDDPEDCSPYYVADVFLTELGCKDVWITDEVEVISENR*
JGI25129J35166_103890143300002484MarineVKIGDMLLNDFGETAILLSEPRLEDDPDFGDPYYVAEVFLTEFGRKEVWITDDLEIISEGR*
JGI25133J35611_1017819813300002514MarineFGETAILLTEPRLEDDPEDCSPYYVADVFLTELGCKDVWITDEVEVISENR*
JGI25133J35611_1020179623300002514MarineMKIGDLVLSEDGHTAILLTEPRRGDDPEDCGPYYVAEVLLTEFGCKDVWITDDLEIISENW*
JGI25130J35507_100813123300002519MarineVRIGDLVLNDFGETAILLTEPRLEDDPEDCSPYYVADVFLTEXGCKDVWITDEVEVISEXR*
JGI25130J35507_106193723300002519MarineMNIGDLVLNPYGETAILLSEPRLEDDPDFGDPYCVADVLLTEFGEKDVWTTEDLEIINENR*
JGI25130J35507_107048123300002519MarineMKIGDLLLNDHGEIAILMTEPRYYEDPDDCAPYYIADVYLTEFSCKDVWITDDVEIISEGR*
JGI25136J39404_102451833300002760MarineMKIGDLVLNDLGYTGILLTEPRLEDDPEDCSPYYIADVHVTEFGCHDVWITDDLEVISENR*
Ga0066859_1021951823300005425MarineMLLNDFGETAILLSEPRLEDDPDFGDPYYVAEVFLTEFGRKEVWITDDLEIISEGR*
Ga0066862_1023253233300005521MarineVLNDFGETAILLTEPRLEDDPEDCSPYYVADVFLTELGCKDVWITDEVEVISESR*
Ga0066852_1019822623300005604MarineVKIGDMLLNDFGETAILLTEPRLEDDPEDCSPYYVAEVFLTEFGRKEVWITDDLEIISEGR*
Ga0075446_1014746413300006190MarineVKIGDMVLNDFGETAILLTEPRFCDDEGNPDGEPYYVADVLLTELGCKDIWITDDLEILS
Ga0098033_111183733300006736MarineVRIGDLVLNDFGETAILLTEPRLEDDPEDCSPYYVADVFLTELGCKDVWITDEVEVISENR*
Ga0098033_119540933300006736MarineVKIGDMLLNDFGETAILLSEPRLLDEPANHLDPDCGPYYVAEVFLTEFGRKEVWITDDLEIISEGR*
Ga0098035_119148113300006738MarineMKIGDMLLNDFGETAILLTEPRLEDDPEDCSPYYVAEVFLTEFGRKEVWITDDLEIISEGR*
Ga0098035_119489933300006738MarineMKIGDMVLNDFGETAILLSEPRLVDHPEYCGPHYVADVLLTELGCKDIWITDDVEIINETR*
Ga0098035_124812633300006738MarineLNDFGETAILLTEPRLEDDPEDCSPYYVADVFLTELGCKDVWITDEVEVISENR*
Ga0098035_130411823300006738MarineMKIGDMLLNDFGETAILLSEPRLVDDPEDSGPYYVGEVLLTEFGCKDVWITDDVEIINENR*
Ga0098058_102122923300006750MarineMNIGDLVLNPCGETAILLSEPRLEDDPDFGDPYYVADVLLTEFGEKDVWTTEDLEIINENR*
Ga0098058_104334123300006750MarineVKVGDLVLNDFGETAILLTEPRLEDDPEDCSPYYVAEVFLTEFGRKEVWITDDLEIISEGR*
Ga0098040_101638093300006751MarineMNIGDLVLNPYGETAILLSEPRLEDDPDFGDPYYVADVLLTEFGEKDVWTTEDLEIINENR*
Ga0098039_106251753300006753MarineVRIGDLVLNDFGETAILLTEPRLEDDPEDCSPYYVADVFLTELGCKDVWITDEVEVISESR*
Ga0098039_108585423300006753MarineMNIGDLVLNPCGETAILLSEPRLEDDPDFGDPYYVADVLLTEFGEKDVWTTEDLEIINESR*
Ga0098044_113714643300006754MarineMKIGDMVLNDFGETAILLSEPRLVDHPEYCGPHYVADVLLTELGCKDIWITDDVEIINEDR*
Ga0098044_115889943300006754MarineVKVGDLVLNDFGETAILLTEPRLEDDPEDCSPYYVADVFLTELGCKDVWITDEVEVISENR*
Ga0098044_134745933300006754MarineMKIGDLLLNDFGETAILLSEPRLVDDPEDCAPYYIADVLLTEFGCQDVWITDDLEIINETR*
Ga0098054_122822233300006789MarineMKIGDMLLNDFGETAILLSEPRLVDDPEDCVPYYVGEVLLTEFGCKDVWITDDVEIINENR*
Ga0098055_130097923300006793MarineMKIGDMLLNDFGETAILLSEPRLVDHPEYCGPHYVADVLLTELGCKDIWITDDVEIINEDR*
Ga0098034_118406033300006927MarineVKIGDLVLNDFGETAILLTEPRLEDDPEDCSPYYVADVFLTELGCKDVWITDEVEVI
Ga0105018_106448163300007760MarineGDMVLAEDGQTAILMTEPRRGDDPEDCGPYYVAEVYLTEFGCKDVWITDDLEIISEGR*
Ga0098052_113296613300008050MarineMKIGDMLLNDFGETAILLTEPRRGDDPEDCGPYYVAEVLLTEFGCKDVWITDDLEIISEGR*
Ga0098052_139225533300008050MarineMKIGDMLLNDFGETAILLSEPRLVDHPEYCGPHYVADVLLTELGCKDIWITDDVEIINETR*
Ga0115650_118285133300008954MarineVKVGDMVLAEDGQTAILMTEPRRGDDPEDCGPYYVAEVYLTEFGCKDVWITDDLEIISEGR*
Ga0118729_1007134173300009130MarineMKIGDMVLNDFGETAILLSEPRLVDHPEYCGPHYVADVLLTEFGCKDIWITDDVEIINEDR*
Ga0114996_1009771573300009173MarineVNIGDLVLAEDGQTAILLTEPRLYDTNIDEDDPYYVAEVYLTEFGRKEVWITDDLEIISEGR*
Ga0114996_1027418643300009173MarineVAGTDLGVSAMKIGDLVLNPCGETAILLTEPRLEDDPEDCSPYYIADVYMTEFGCTDVWITDDLEIISENR*
Ga0114996_1040914343300009173MarineVNIGDLVLAEDGQTAILLTEPRLYDTNIDDDAPYYVAEVYLTEFSCKDVWITDDLELISENR*
Ga0114999_1017291453300009786MarineMKIGDLLLSDSGETAILMTEPRYYEDHDDCGPYYVATVYLTEFGCQDVWITDDVEVISENR*
Ga0114999_1094379933300009786MarineVKIGDLVLNPCGETAILLTEPRLEDDPEDCSPYYIADVYMTEFGCTDVWITDDLEIISENR*
Ga0098061_110349713300010151MarineMKIGDLVLSEDGHTAILLTEPRRGDDPEDCGPYYVAEVLLTEFGCKDVWIT
Ga0098061_128930433300010151MarineMLLNDFGETAILLSEPRLEDDPDFGDPYYVADVLLTEFGCKDVWITDDVEIISEN
Ga0098047_1033838113300010155MarineMLLNDFGETAILLSEPRLLDEPANHLDPDCGPYYVAEVFLTEFGRKEVWITDDLEIISEGR*
Ga0098047_1040923423300010155MarineVRIGDLLLNDRGETAILLTEPQLCDDYEDCSPYYIGNVYLTEFGCKDVWITDDVEIISESR*
Ga0133547_1208565533300010883MarineMKIGDLLLSDSGETAILMTEPRYYEDHDDCGPYYVATVYLTEFGCQDVWITDDVEVISE
Ga0163108_1061583543300012950SeawaterMNIGDLLLNDRGETAILLTEPQLCDDYEDCSPYYIGNVYLTEFGCKDVWIT
Ga0163108_1069766023300012950SeawaterVKIGDLVLNDFGETAILLTEPRLEDDPEDCSPYYVADVFLTELGCKDVWITDEVEVISESR*
Ga0171648_10461033300013108MarineMKIGDLLLNDFGETAILLSDPRLEDDPEDCSPYYIADVLLTEFGCKDIWITDDVEILNENR*
Ga0181374_101943053300017702MarineMKIGDMLLNDFGETAILLTEPRLEDDPEDCSPYCVADVFLTEFGRKEVWITDDLEIISEG
Ga0181367_103886933300017703MarineMNIGDLVLNPCGETAILLSEPRLEDDPDFGDPYYVADVLLTEFGEKDVWTTEDLEII
Ga0181432_103799833300017775SeawaterMKIGDMVLNPYGETAILLSEPRLEDDPDFSDPYYVADVLLTEFGEKDVWITEDLEIINEN
Ga0181432_104936953300017775SeawaterVKVGDLVLAEDGQTAILLTEPRLYDTNIDEDDPYYVADVFLTEFGRKEVWITDDLEIVSENR
Ga0181432_108220453300017775SeawaterVKIGDLVLNDFGETAILLTEPRLVDDPEDCSPYYVGDVLLTEFGCKDIWITDDVEVISEN
Ga0181432_110064713300017775SeawaterVKIGDLLLNDQGETAILLTEPQLCDDYEDCSPYYIGNVYLTEFGCKDVWITDDVEIISEN
Ga0181432_113906723300017775SeawaterMKIGDLVLNPCGETAILLSEPCLLDDPGSLDGPYYVADVYLTEFGEKDVWMTDDLEIINENR
Ga0181432_116015423300017775SeawaterVKIGDLVLNDQGETAILLTDPRYYEDPDDCAPYYIADVYLTEFSCKDVWITDDVEIISEN
Ga0181432_120908623300017775SeawaterMKIGDMVLNDLGYTALLLTEPRLVDDPEDCSPYYVADVLLTGLGCKDVWITDDVEIISES
Ga0181432_123775923300017775SeawaterMKIGDMVLNDLGYTAILLTEPRLVKDPAQERSTYYIADVLLTEFGCKDVWITDDVEIISENR
Ga0181432_128197933300017775SeawaterMKIGDLVLSEDGQTAILMTEPRRGNDPEDLLRDYYVAEVYLTEFGRKEVWITDDLEIISENR
Ga0206685_1014363623300021442SeawaterMKIGDMLLNDFGETAILLSEPRRCDTNIDSDDPYYIADVYLTAFDCKDVWITDDVEIINENW
(restricted) Ga0255047_1008169163300024520SeawaterVKVGDLVLAEDGQTAILLTEPRLYDTNIDKDTPYYVAEVYLTEFSCKAVWITDDLELISENR
(restricted) Ga0255047_1061806933300024520SeawaterGDLVLAEDGQTAILLTEPRFYDTNIDEDDPYYVAEVYLTEFGRKEVWMTDDLEIISEGR
Ga0207906_104417433300025052MarineVKVGDLVLAEDGQTAILLTEPRLYDTNIDEDDPYYVAEVYLTEFGRKEVWITDDLEIISEGR
Ga0208668_101717653300025078MarineVKIGDLVLNDFGETAILLTEPRLEDDPEDCSPYYVADVFLTELGCKDVWITDEVEVISEN
Ga0208156_101520963300025082MarineVKIGDMLLNDFGETAILLSEPRLEDDPDFGDPYYVAEVFLTEFGRKEVWITDDLEIISEG
Ga0208156_108765513300025082MarineVKVGDLVLNDFGETAILLTEPRLEDDPEDCSPYYVADVFLTELGCKDVWITDEVEVISES
Ga0208011_103425913300025096MarineMNIGDLVLNPCGETAILLSEPRLEDDPDFGDPYYVADVLLTEFGEKDVWTTEDLEIINE
Ga0208010_101295253300025097MarineMNIGDLVLNPCGETAILLSEPRLEDDPDFGDPYYVADVLLTEFGEKDVWTTEDLEIINES
Ga0208010_103818543300025097MarineVKIGDMLLNDFGETAILLSEPRLLDEPANHLDPDCGPYYVAEVFLTEFGRKEVWITDDLEIISEGR
Ga0208013_103528953300025103MarineMNIGDLVLNPCGETAILLSEPRLEDDPDFGDPYYVADVLLTEFGEKDVWTTEDLEIINEN
Ga0208553_104962253300025109MarineVKIGDLVLNDFGETAILLTEPRLEDDPEDCSPYYVADVFLTELGCKDVWITDEVEVISES
Ga0208553_111059433300025109MarineVKIGDMLLNDFGETAILLSEPRLEDDPEDCGPYYVAEVFLTEFGRKEVWITDDLEIISEG
Ga0209349_100716923300025112MarineMTVGDLVLNPCGETAILLTEPRLEDDPDFGDPYYVADVLLTEFGEKDVWITEDLEIINEN
Ga0209349_119011833300025112MarineGDMLLNDFGETAILLTEPRLVDDPEDCSPYYVGDVLLTEFGCKDVWITDDVEVISESR
Ga0208433_113857823300025114MarineVKVGDLVLNDFGETAILLTEPRLEDDPEDCSPYYVADVFLTELGCKDVWITDEVEVISEN
Ga0209434_1004925113300025122MarineMKIGDLVLNDFGETAILLTEPRLEDDPEDCSPYYVADVFLTELGCKDVWITDEVEVISEN
Ga0209434_107653723300025122MarineMKIGDLLLNDHGEIAILMTEPRYYEDPDDCAPYYIADVYLTEFSCKDVWITDDVEIISEG
Ga0209434_112979913300025122MarineVKIGDLVLNDFGETAILLTEPRLEDDPEDCSPYYVADVFLTELGCKDVWITDEVEVISE
Ga0209644_109632933300025125MarineVKIGDLLLNDRGETAILLTEPQLCDDYEDCSPYYIGNVYLTEFS
Ga0209644_111994023300025125MarineMKIGDLVLNDLGYTGILLTEPRLEDDPEDCSPYYIADVHVTEFGCHDVWITDDLEVISEN
Ga0209128_101071613300025131MarineGDLVLNDFGETAILLTEPRLEDDPEDCSPYYVADVFLTELGCKDVWITDEVEVISENR
Ga0209128_106629823300025131MarineVRIGDLLLNDRGETAILLTEPQLCDDYEDCSPYYIGNVYLTEFGCKDVWITDDVEIISES
Ga0209128_109189943300025131MarineMKIGDMLLNDFGETAILLSEPRLVDHPEYCGPHYVADVLLTELGCKDIWITDDVEIINED
Ga0209128_112218133300025131MarineMKIGDLVLSEDGHTAILLTEPRRGDDPEDCGPYYVAEVLLTEFGCKDVWITDDLEIISEN
Ga0209128_122978033300025131MarineKIGDLVLNDFGETAILLTEPRLEDDPEDCSPYYVADVFLTEFGCKDVWITDDVEVISESR
Ga0209756_103757513300025141MarineFGETAILLTEPRLEDDPEDCSPYYVADVFLTELGCKDVWITDEVEVISENR
Ga0209756_125606543300025141MarineMKIGDMVLNDFGETAILLSEPRLVDHPEYCGPHYVADVLLTELGCKDIWITD
Ga0209757_1002777843300025873MarineMKIGDMLLNDFGETAILLTEPRLVDEDEFFDPHYVADVLLTEFGCQDVWITDDVEIINEN
Ga0209757_1006081423300025873MarineMKIGDLVLNPCGETAILLTEPRLEDDPDFGDPYYVADVYMTEFGCTDVWITDDLEIISEN
Ga0209757_1024496213300025873MarineMKIGDMILNDLGYTAILLTEPRLEDDPGSLDGPYYVADVYMTEFGCKDVWITDDLEIISENR
Ga0209089_1007898083300027838MarineVNIGDLVLAEDGQTAILLTEPRLYDTNIDDDAPYYVAEVYLTEFSCKDVWITDDLELISENR
Ga0209501_1030720023300027844MarineMKIGDLLLSDSGETAILMTEPRYYEDHDDCGPYYVATVYLTEFGCQDVWITDDVEVISEN
Ga0256381_101387343300028018SeawaterVKVGDLVLSEDGQTAILLTEPRRGDDPEDCGPYYVAEVLLTEFGLKEVWITDDLEIVSEG
Ga0256381_103124023300028018SeawaterVNIGDLVLAEDGETAILLTEPRLYDTNIDEDDPYYVAEVYLTEFGRKEVWITDDLEIISENR
Ga0302119_1009187723300031606MarineMKVGDMVLSENGQTAILLTKPRVADDDMGWNSFYVAEVFLTEFGYKEVWITDDLEIVNAN
Ga0302133_1022054223300031646MarineVKVGDLLLSDSGETAILMTEPRYYEDHDDCGPYYVATVYLTEFGCQDVWITDDVEVISEN
Ga0315327_1017112933300032032SeawaterMKIGDLVLNPCGETAILLTEPRLEDDPEDCSPYYVADVLLTEFGCTDVWITDDLEIISEN
Ga0315327_1095432533300032032SeawaterMKIGDLVLDPFGDTAILLSEPRLMDDPGELDAPHYVADVYLTEFSCKDVWITDDVEVISESR
Ga0315329_1027640133300032048SeawaterMKIGDMLLNDFGETAILLSEPRLCNTNIDSDDPYYVADVYLTEFDCKDVWITDDVEIINEDW
Ga0315329_1068186633300032048SeawaterMKIGDLVLSEDGQTAILMTEPRRGNDPEDLLRDYYVAEVYLTEFSCKDVWITDDLELISENR
Ga0310345_1048291433300032278SeawaterMKIGDMVLNDLGYTAILLTEPRLVDDLGSLDGPYYVADVLLTELGCKDIWYTDDLEVISENR

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Bioinformatics & Integrated Biology Lab
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Biomedical Sciences Research Center "Alexander Fleming"
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