Metagenome / Metatranscriptome Family F105543

Basic Information
Family ID	F105543
Family Type	Metagenome / Metatranscriptome
Number of Sequences	100
Average Sequence Length	74 residues
Representative Sequence	VIFRRDGERYIVFLGDDRIGFVRRADNGTWNHVDTTMAHSGYAKTRERAGQLLRRRYERMVREGVI
Number of Associated Samples	86
Number of Associated Scaffolds	100

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	30.00 %
% of genes near scaffold ends (potentially truncated)	5.00 %
% of genes from short scaffolds (< 2000 bps)	9.00 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (94.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (30.000 % of family members)
Environment Ontology (ENVO)	Unclassified (30.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.000 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 27.27% β-sheet: 22.73% Coil/Unstructured: 50.00%
Feature Viewer

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Pfam ID	Name	% Frequency in 100 Family Scaffolds
PF06210	DUF1003	34.00
PF06684	AA_synth	22.00
PF04828	GFA	6.00
PF00072	Response_reg	1.00
PF02810	SEC-C	1.00
PF13460	NAD_binding_10	1.00
PF01568	Molydop_binding	1.00
PF06685	DUF1186	1.00

COG ID	Name	Functional Category	% Frequency in 100 Family Scaffolds
COG4420	Uncharacterized membrane protein	Function unknown [S]	34.00
COG3791	Uncharacterized conserved protein	Function unknown [S]	6.00

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.00 %
All Organisms	root	All Organisms	6.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.00 %
cellular organisms	root	All Organisms → cellular organisms	6.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.00 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	6.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.00 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	6.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.00 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.00 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	1.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.00 %
alpha proteobacterium BAL199	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → alpha proteobacterium BAL199	1.00 %

Scaffold	Taxonomy	Length	IMG/M Link
3300005435\|Ga0070714_100364236	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1360	Open in IMG/M
3300009143\|Ga0099792_10491968	Not Available	767	Open in IMG/M
3300010048\|Ga0126373_13279341	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	504	Open in IMG/M
3300011270\|Ga0137391_10190625	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → alpha proteobacterium BAL199	1785	Open in IMG/M
3300021168\|Ga0210406_10210304	All Organisms → cellular organisms → Bacteria → Proteobacteria	1610	Open in IMG/M
3300025929\|Ga0207664_11625801	Not Available	568	Open in IMG/M
3300027069\|Ga0208859_1007277	Not Available	1191	Open in IMG/M
3300031128\|Ga0170823_16066025	Not Available	529	Open in IMG/M
3300031768\|Ga0318509_10166564	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1220	Open in IMG/M
3300031890\|Ga0306925_10180017	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2277	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	99.00%
Aquatic	Environmental → Aquatic	1.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	99.00%
Freshwater	Environmental → Aquatic → Freshwater	1.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	81.00%
Loam	Environmental → Terrestrial → Soil → Loam	18.00%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.00%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	42.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	35.00%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.00%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.00%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.00%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.00%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	30.00%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	26.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.00%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.00%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.00%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	4.00%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.00%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.00%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	3.00%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.00%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.00%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	1.00%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.00%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.00%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.00%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.00%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2189573001	Grass soil microbial communities from Rothamsted Park, UK - FD2 (NaCl 300g/L 5ml)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300022498	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-32-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026508	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-A	Environmental	Open in IMG/M
3300026999	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF044 (SPAdes)	Environmental	Open in IMG/M
3300027069	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF002 (SPAdes)	Environmental	Open in IMG/M
3300027173	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF036 (SPAdes)	Environmental	Open in IMG/M
3300027502	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027521	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027703	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FD2_07263330	2189573001	Grass Soil	VIFRRDGERYVVFLGDDRXGFMQRKDTGSWNHVDTTMAHSGYAKTRERADQLLRRRYERMIREGAI
Ga0062385_110236031	3300004080	Bog Forest Soil	FRRDGERYIVFLGDERIGVVRRADSGAWNFVDTTMAHSGYTKTRQRAGQLLRRRFERMVREGAI*
Ga0066677_100899871	3300005171	Soil	IFRRDGERYIVFLGDDRIGFVRRADNGTWNHVDTTMAHSGYAKTRERADQLLRRRYERMVRDGEI*
Ga0066671_106987021	3300005184	Soil	GERYIVFLGDDRIGFTRRADNGTWNHVDTTMAHSGYAKTRERAGQLLRRRYERMVREGSI
Ga0070714_1003642362	3300005435	Agricultural Soil	VVLRRAERYVVYLGDDRIGFTRRADNGTWNHVDTTMAHSGYAKTRERAGQLLRRRYERMVREGVI*
Ga0070710_102882573	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	RVIFRRDGERYIVFVDDDRSLRETSQSERIGFVRRADDGSWNYVDTTMTHSGYAKTRERAGQLLRRRYERIVREGSI*
Ga0066681_104035262	3300005451	Soil	KKARSSSGDKRVIFRRDGECYVVFLRDDRIGFVRRADNGTWNHVDTIMAHSGYAKTRERAGQLLRRRYERMVRDGEI*
Ga0070706_1009137212	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	VIFRRDGERYIVFLGDDRIGFAQRTDNGSWNHVDTTMAHSGYAKTRERAGQLLRRRYERMIREGVI*
Ga0066708_109762661	3300005576	Soil	RRHRSVDKKVMFRRDGERYIVFLGDDRIGFTRRADNGTWNHVDTIMAHSGYAKTRERAGQLLRRRYERMVRDGEI*
Ga0070765_1018403981	3300006176	Soil	YIVFLGDDRIGFVRRADNGTWNHVDTTMAHSGYAKTRERAGQLLRRRYERMVREGEI*
Ga0070765_1019645971	3300006176	Soil	GRHRSGDKKVIFRHDGERCIIFFGDDRIGFVRRADNGTWNHVDTTMAHSGYAKTRERAGQLLRRRYARMVREGEI*
Ga0099791_101633811	3300007255	Vadose Zone Soil	RSGDKRVIFRRDGERYIVFLGDDRIGFVRRADNGTWNHVDTTMAHSGYAKTRERAGQLLRRRYERMIREGAI*
Ga0099794_107193441	3300007265	Vadose Zone Soil	TPCQNHREKGSHRPGDKRVIFRRDGDRYIVFLGGDRIGFVRRADNGTWNHVDTTMAHSGYAKTRERAGRLLCRRYERMVREGVI*
Ga0099795_102601241	3300007788	Vadose Zone Soil	KGSASSRRQKVIFRRDRDRYVVFLGDDRIGFVRRADNGTWNHVDTTMAHSGYAKTRERAGQLLCRRYERMVRDGEI*
Ga0099830_107477532	3300009088	Vadose Zone Soil	LPRSGKIRPLGEAEVAERKGRNRSGDKKVIFRRDGERYIVFLGDDRIGFVRRADNGTWNHVDTTMAHSGYAKTRERAGQLLCRRYERMVRDGEI*
Ga0099830_109598211	3300009088	Vadose Zone Soil	SGDKRVIFRRDDERYIVFLGNDDRSLREISQSERIGFVRRSGDGSWNYVDTTMAHSGYAKTRERAGQLLRRRYERMVRDGVICGPVLLIPITKP*
Ga0066709_1036114721	3300009137	Grasslands Soil	RAIFRRDGERYIVFLGDDRIGFVRRADNRTWNHVDTTMADSGYAKTRKRAGELLRRRYERMVREGVI*
Ga0099792_101003331	3300009143	Vadose Zone Soil	KKGRHRSDDQRVIFRRDGDRYVAFLGGHRIVYKRNADNGTWNHVDTTMAHSGYAKTRERAGQLLCRRYERMVRDGEI*
Ga0099792_104919682	3300009143	Vadose Zone Soil	VIFRRDGERYIVFLADDRIGFVRRADNGTWNHVDTTMAHSGYAKTRERAGQLLRRRYERMVREGVI*
Ga0126373_132793412	3300010048	Tropical Forest Soil	AALAKCRAELAEKKSRHRPDKRVIFRCDGERYIVFLGDDDRIGFVRRADEGSWNYVDTTMAHSGYAKTRDRAGELLRRRYERMVREGSM*
Ga0099796_103564472	3300010159	Vadose Zone Soil	RRDGERYIVFLGEDRIGFVRRADNGSWNHVDTTMAHSGYAKTRERAGQLLRRRYERMVREGEI*
Ga0126372_124215372	3300010360	Tropical Forest Soil	RAELAEKKGQRRSGDKKVIFRRDGERYVVFLGDGRIGFVRRADNGTWNHVDTTMVHSGYAKTRERAGQLLLRRYERMVREGSI*
Ga0126378_108691882	3300010361	Tropical Forest Soil	SDDKRVIFRRDGERYIAFLGGHRIVFIRRADNGTWNHVDTTMAHSGYAKTRERSGQLLRRRYERMVRNGKI*
Ga0126378_131155861	3300010361	Tropical Forest Soil	LAKCRAELAEKKSRHRPDKRVIFRRDGDRYIVFLGDDDRIGFVRRANEGSWNYVDTTMAHSGYAKTRDRAGELLRRRYERMVREGSM*
Ga0126381_1017673452	3300010376	Tropical Forest Soil	EVAEKKGQRPSGDKRVIFRRDGERYIVFLGDDRIGFVRRADNGTWNHVDTTMAHSGYAKTRERSGQLLRRRYEHMVQAGSI*
Ga0126383_120683741	3300010398	Tropical Forest Soil	DKKVIFRRDGERYVVFLGDDRIGFVRRADNGTWNHVDTTMVHSGYAKTRERAGQLLLRRYERMVREGSI*
Ga0137392_115657102	3300011269	Vadose Zone Soil	VIFRRDGERYIVFLGDDRIGFVRRADNGTWNHVDTTMAHSGYAKTRERAGQLLRRRYERMVREGVI*
Ga0137391_101906252	3300011270	Vadose Zone Soil	VVFRRDGDRYIVFLDDDRLGFVRRADNGTWNFVDTTMAHSGYTKTRQRAGQLLRRRFEQMVRQGEI*
Ga0137391_102569844	3300011270	Vadose Zone Soil	AEVAEEKNRHQRAVKSNKRMVFRRDGDRYIAFLDDDRLGFVRRSDNGTWNFVDTTMAHSGYTKTRQRAGQLLRRRFEQMVREGAI*
Ga0137391_110729321	3300011270	Vadose Zone Soil	DDERYIVFLGDERIGFVRRADNGTWNHVDTTMAHSGYAKTRERAGQLLCRRYERMVREGEI*
Ga0137382_103351081	3300012200	Vadose Zone Soil	LAKHRTEVTEKKARSSSGDKRVIFRRDGERYIVFLGEDRIGFVRRADNGTWNHVDATMEHSGYAKTRERAGQLLCRRYERMVRDGEI*
Ga0137362_106867741	3300012205	Vadose Zone Soil	GDKKMIFRRDGERYVVFLGDDRIGFTRRADNGTWNHVDTTMAHSGYAKTRERAGQLLRRRYERMVREGVI*
Ga0137379_104193383	3300012209	Vadose Zone Soil	FLGDDRIGFVRRADNGTWNHVDTTMAHSGYAKTRERAGQLLCRRYERMVREGEI*
Ga0137377_106017682	3300012211	Vadose Zone Soil	LGEAEVAEKKGQRRSGDKRVIFRRDGERYIVFFGDDRIGFVRRADNGTWNHVDTTMAHSGYAKTRERSGQLLRRRYERMVREGVI*
Ga0137384_108455573	3300012357	Vadose Zone Soil	PGDKRVIFRRDGERYIVFLGDDRIGFVRRADNGTWNHVDTTMAHSGYAKTRERAGQLLRRRYERIVREGVI*
Ga0137385_111884202	3300012359	Vadose Zone Soil	VIFRRDGERYIVFLGDDDRIGFVRRADNGTWNHVDTTMAHSGYAKTRGRAGQLLRRRYQRMVREGVI*
Ga0137360_113598582	3300012361	Vadose Zone Soil	FLGDDRIGFVRRADNGTWNHVDTTMAHSGYAKTRERAGQLLRRRYERMVREGVI*
Ga0137398_105865951	3300012683	Vadose Zone Soil	DKRVVFRRDGDRYIVFLGDDRIGFVRRADNGTWNHVDTTMAHSGYAKTRERAGHLLRRRYERMVREGEI*
Ga0137397_107763732	3300012685	Vadose Zone Soil	GERYIAFLGDDRIGFVRRADNGTWNHVDTTMAHSGYAKTRERAGQLLRRRYERMIREGAI
Ga0137395_102541731	3300012917	Vadose Zone Soil	LGEAEVAEKKGQRRSDDKRVIFRRDGERYIVFLGDDRIGFVQRTDNGSWNHVDTTMAHSGYAKTRERAGQLLRRRYERMVQE
Ga0137394_105908821	3300012922	Vadose Zone Soil	RSGKTRPLGEAEIAGNKGQRSSGGQKVIFRRDGERYIVFLGDDRIGFVQRTDNGSWNHVDTTMAHSGYAKTRERAGQLLRRRYERMIREGAI*
Ga0137359_109539102	3300012923	Vadose Zone Soil	RYIVFLGDDRIGFVQRTDNGSWNHVDTTMAHSGYAKTRERAGQLLRRRYERMVREGVI*
Ga0137359_112820461	3300012923	Vadose Zone Soil	SGRHRSGDKKMIFRRDGERYIVFLGEDRIGFVRRADNGSWNHVDTTIAHSGYAKTRERAGQLLRRRYERMVREGEI*
Ga0164303_105633912	3300012957	Soil	MQRSGKTRPLGEAEIAEKKGRPRSDDKRVIFRRDGDRYIVFLGDDRIGFVRRADNGTWNHVDTTMAHSGYAKTRE
Ga0134072_104635431	3300015357	Grasslands Soil	KARRRSEKRVIFRRDDERYIAFLGNDHPIGFVRRADNGTWNFVDTTMAHLGYAKTRERAGQLLRRRYERMVRDGEI*
Ga0182035_117311661	3300016341	Soil	VRHRAVSKRVIFRRDSERYIVFLGDDDRIGFVRRADNGSWNFVDTTMAHSGYTNTRQRAGQLLRRRFEQMVRQDEI
Ga0210407_104775371	3300020579	Soil	LRLWRSPRLAALRWRNTVPKSPGIRGRCRSGDKRVIFRRDRDRYIVFLGDDRIGFVRRGDNGTWNHVDTTMAHSGYAKARERAGQLLRRRYERMVRDGVI
Ga0210407_113764522	3300020579	Soil	RYSVFLGDDRIGFVRRADNGTWNHVDTTMAHSGYAKTRERAGQLLRRRYERMVREGEI
Ga0210403_112509941	3300020580	Soil	KRVIFRRDRDRYIVFFDDDRIGFVRRADNGTWNHVDTTMAHSGYAKTRERAGQLLRRRYERMIREGSI
Ga0210401_109027062	3300020583	Soil	EVAEKKGRQRSGDQRVIFRRDRDRYIVFFGDDRIGFVRGADNGTWNHVDTTMAHSGYAKTRERAGQLLRRRYERMVREGVI
Ga0210401_114083392	3300020583	Soil	FRRDGERYIIFFGDDRIGFVRRADNGTWNHVDTTMARSGYAKTRERAGQLLRRRYARMVREGEI
Ga0210406_102103042	3300021168	Soil	VKHRAEIAEKKGRHRSDDKRVIFRRDGDRYIVFLGGDRIGFVRRADNGTWNNVDTTMAHSGHAKTRERAGQLLRRRYERMVRDGEI
Ga0210406_110460781	3300021168	Soil	AEVAGKKGRRRSGDKRVIFRRDRDRYIVFFGDDRIGFVRRADNGTWNHVDTTMAHSGYAKTRERAGQLLRRRYERMIREGSI
Ga0210406_113883592	3300021168	Soil	RYIVFLGDDRIGFVRRADNGTWNHVDTTMVRSGYAKTRERAGQLLRRRYERMVREGVI
Ga0210405_107217571	3300021171	Soil	QKGDLSSRQDRYIVFLGDDRIGFVRRADNGTWNHVDTTMAHSGYAKTRERAGQLLRRRYERMVRDGVI
Ga0210384_103437013	3300021432	Soil	DDKRVIFRRDGDRYIVFLGDDRIGFVRRADNGTWNHVDTTMAHSGYAKTRERAGQLLRRRYERMVREGSI
Ga0210384_110515491	3300021432	Soil	EVAEKKARQRSGDQRVIFRRDRDRYIVFFGDDRIGFVRGADNGTWNHVDTTMAHSGYAKTRERAGQLLRRRYERMVREGVI
Ga0210402_105202762	3300021478	Soil	QKGDLSSRQDRYIVFLGDDRIGFVRRADNGTWNHVDTTMAHFGYAETREGAGQLLRRRYERMVRDGVI
Ga0210410_103169152	3300021479	Soil	VIFRRDGERYVVFLGDDRIGFTRRADNGTWNHVDTTMAHPGYAKTRERAGQLLRRRYERMVREGEI
Ga0242644_10402461	3300022498	Soil	SGDQRVIFRRDGARYIVFLGDDRIGFVRRADNGTWNHVDTTMAHSGYAKTRERAGQLLRRRYERMGSHKVRC
Ga0242662_101717741	3300022533	Soil	RVIFRRDRDRYIVFFGDDRIGFVRGADNGTWNHVDTTMAHSGYAKTRERAGQLLRRRYERMVREGVI
Ga0242654_103594342	3300022726	Soil	ALPRSGKTRPLGEAEVAEKKGRHRSGGKKVIFRRDGERYVAVLGDDRIGFVRRADNGTWNHVDTTMAHSGYAKTRERAGQLLRRRYERMVREGVI
Ga0207692_105867391	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	RRRPDKRVIFRRDGERYIVFVDDDRSLRETSQSERIGFVRRADDGSWNYVDTTMTHSGYAKTRERAGQLLRRRYERIVREGSI
Ga0207693_106287981	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	VRHRPERRVIFRRDDERYIVFLANNDRIGFVRRSDDGSWNYVDTTMAHSGYAKTRERAGQLLRRRYERMVREGSI
Ga0207664_106714251	3300025929	Agricultural Soil	GDKRVVFRRDGERYVVFLGDERIGFVRRAGNGTWNHVDTTMAHSGYVKTRERAGQLLCRRYERMVREGEI
Ga0207664_116258011	3300025929	Agricultural Soil	KYRAEVGKKKGRRRPDKRVIFRRDGERYIVFVDDDRSLRETSQSERIGFVRRADDGSWNYVDTTMTHSGYAKTRERAGQLLRRRYERIVREGSI
Ga0257161_11133662	3300026508	Soil	MKGRHGSDKRVIFRRDRERYVVFLCNDGRSPREISQRERIGFVRRADNGTWNFVDTTMAHSGYAKTRERAGQLLRRRYERMVREGSI
Ga0207949_10028834	3300026999	Forest Soil	AEIAEKKGRHRSDDKRVIFRRDGDRYIVFLGDDRIGFVRRADNGTWNHVDTTMAHFGYAKTRERAGQLLRRRYERMVREGVI
Ga0208859_10072772	3300027069	Forest Soil	VPKIAEKKGRHRSDDKRVIFRRDGDRYVVFLGDDRIGFVRRADNGTWNHVDTTMAHSGYAKTRERAGQLLRRRYERMVRDGEI
Ga0208097_10285002	3300027173	Forest Soil	LAKHRTEIAEKKGRHRPGDKKVIFRRDGERYVVFLGDDRIGFVRRADNGTWNHVDTTMAHSGYAKARERAGQLLRRRYERMVRDGVI
Ga0209622_10190071	3300027502	Forest Soil	RRDGDPYIVFLGNDRIGFVRRADNGTWNHVDTTMAHSGYAKTRERAGQLLCRRYERMVRDGEI
Ga0209524_11054831	3300027521	Forest Soil	KKGRHRSDDKRVIFRRDDERYIVFLGDDDRIGFVRRTDDGSWNYVDTTMTHSGYAKTRERAGQLLRRRYERMVRDGEI
Ga0207862_11106951	3300027703	Tropical Forest Soil	GKKGQRRSRGKKVVFRRDGERYIVFLGDDRIGFVRRADNGTWNHVDTTMARSGYARTRERAGQLLCRRYERIVRDGEI
Ga0209488_104961132	3300027903	Vadose Zone Soil	VFLGDERIGFIRRADNGTWNHVDTTMAHSGYAKTRERAGQLLCRRYERMVREGEI
Ga0308309_109904031	3300028906	Soil	LGEAEIAEKKGRNRSGDDKKVIFRRDGERYIVFLGDDRIGFVRRADNGTWNHVDTTMAHSGYAKTRERAGQLLRRRYERMVREGEI
Ga0308309_110330932	3300028906	Soil	AEKKGRQRSGDQRVIFRRDRDRYIVFFGDDRIGFVRGADNGTWNHVDTTMAHSGYAKTRERAGQLLRRRYERMVREGVI
Ga0170823_160660251	3300031128	Forest Soil	VIFRRDGERYVAFLGDDRIGFVQRADNGTWNHVDTTMAHSSYAKTRERAGQLLRRRYER
Ga0318541_102863473	3300031545	Soil	KAVFRRDGERYIVFLGDDRIGFVRRADNGTWNHTDTTMARSGYAKTRQRAGQLLCRRYERMVRDGEI
Ga0318528_102182733	3300031561	Soil	RKGQRRSRGKKVVFRRDGERYIVFLGDDRIGFVRRADNGTWNHTDTTMARSGYAKTRQRAGQLLCRRYERMVRDGEI
Ga0318573_103395542	3300031564	Soil	AKHRAEIAGKKGQRRSRGKKAVFRRDGERYIVFLGDDRIGFVRRADNGTWNHTDTTMARSGYAKTRQRAGQLLCRRYERMVRDGEI
Ga0306917_115814511	3300031719	Soil	LAKHRAEIAGKKGQRRSRGKKAVFRRDGERYIVFLGDDRIGFVRRADNGTWNHTDTTMARSGYAKTRQRAGQLLCRRYERMVRDGEI
Ga0307469_118592941	3300031720	Hardwood Forest Soil	RRSGDKRVIFRSDCERYIVFLGDDRIGFVRCADNGTCNHVDTTMAHSGYAKTRERAGQLLRRRHERMVRQGLI
Ga0307468_1019864661	3300031740	Hardwood Forest Soil	KRVIFRRDGERYIVFLGDDRIGFVRRADNGTWNHVDTTMAHPGYAKTRERAGQLLRRRYERMVREGVI
Ga0318502_109000351	3300031747	Soil	AKHRAEIAGKKGQRRSRGKKVVFRRDGERYIVFLGDDRIGFVRRAENGTWNHVDTTMARSGYAKTRERAGQLLCRRYERMVRDGEI
Ga0318494_107679802	3300031751	Soil	GKKVVFRRDGERYIVFLGDDRIGFVRRADNGTWNHVDTTMARSGYAETRERAGQLLCRRYERTVRDGEI
Ga0318509_101665643	3300031768	Soil	VLAKHRAEIAGKKGQRRSRGKKAVFRRDGERYIVFLGDDRIGFVRRADNGTWNHTDTTIARSGYAKTRQRAGQLLCRRYERMVRDGEI
Ga0318521_103466332	3300031770	Soil	GQRRSRGKKVVFRRDGERYIVFLGDDRIGFVRRADNGTWNHVDTTMARSGYAETRERAGQLLCRRYERTVRDGEI
Ga0318529_102466231	3300031792	Soil	RDGERYIVFLGDDRIGFVRRAENGTWNHVDTTMARSGYAKTRQRAGQLLCRRYERMVRDGEI
Ga0318544_101651722	3300031880	Soil	KKVVFRRDGERYIVFLGDDRIGFVRRAENGTWNHVDTTMARSGYAKTRERAGQLLCRRYERMVRDGEI
Ga0306925_101800174	3300031890	Soil	TALAKHRAEIAGKKGQRRSRGKKVVFRRDGERYIVFLGDDRIGFVRRADNGTWNHVDTTMARSGYAETRERAGQLLCRRYERTVRDGEI
Ga0318522_103262442	3300031894	Soil	VVFRRDGERYIVFLGDDRIGFVRRADNGTWNHVDTTMARSGYAETRERAGQLLCRRYERTVRDGEI
Ga0318551_104872902	3300031896	Soil	GKKAVFRRDGERYIVFLGDDRIGFVRRADNGTWNHTDTTMARSGYAKTRQRAGQLLCRRYERMVRDGEI
Ga0306923_123957821	3300031910	Soil	AEIAGKKGQRRSRGKKVVFRRDGERYIVFLGDDRIGFVRRADNGTWNHVDTTMARSGYAETRERAGQLLCRRYERTVRDGEI
Ga0306921_103176213	3300031912	Soil	IFRRDGERYIVFLGDDRLGFVRRADNGTWNHVDTTMAHSGYAKTRERSGQLLRRRYERMVRAGSI
Ga0310912_109728101	3300031941	Soil	KKVVFRRDGERYIVFLGDDRIGFVRRAENGTWNHVDTTMARSGYAKTRERAGQLLCRRYERTVRDGEI
Ga0306926_121695891	3300031954	Soil	YIVFLGDDRIGFVRRADNGTWNHVDTTMARSGYAETRERAGQLLCRRYERTVRDGEI
Ga0306922_101813821	3300032001	Soil	QRRSRGKKAVFRRDGERYIVFLGDDRIGFVRRAENGTWNHVDTTMARSGYAKTRERAGQLLCRRYERMVRDGEI
Ga0318559_102560291	3300032039	Soil	KKGQRRSRGKKAVFRRDGERYIVFLGDDRIGFVRRADNGTWNHTDTTMARSGYAKTRQRAGQLLCRRYERMVRDGEI
Ga0307471_1001447565	3300032180	Hardwood Forest Soil	KHRSEVAEKKGRQRSGDQRVIFRRDGARYIVFLGDDRIGFVRRADNGTWNHVDTTMAHSGYAKTRERAGQLLRRRYERMVREGVI
Ga0306920_1035926201	3300032261	Soil	RVIFRRDSERYIVFLGDDDRIGFVRRADNGSWNFVDTTMAHSGYTNTRQRAGQLLRRRFEQMVRQDEI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F105543

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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