NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F105592

Metagenome / Metatranscriptome Family F105592

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105592
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 54 residues
Representative Sequence MWMALGLLVVLCGLAVKTIDPGKVRSVVLLLLGFFALRIVLTGFASR
Number of Associated Samples 70
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 55.00 %
% of genes near scaffold ends (potentially truncated) 21.00 %
% of genes from short scaffolds (< 2000 bps) 85.00 %
Associated GOLD sequencing projects 63
AlphaFold2 3D model prediction Yes
3D model pTM-score0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (61.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa
(27.000 % of family members)
Environment Ontology (ENVO) Unclassified
(27.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(62.000 % of family members)


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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 57.33%    β-sheet: 0.00%    Coil/Unstructured: 42.67%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.47
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF00009GTP_EFTU 6.00
PF01156IU_nuc_hydro 2.00
PF02604PhdYeFM_antitox 2.00
PF03992ABM 2.00
PF03946Ribosomal_L11_N 1.00
PF00903Glyoxalase 1.00
PF01850PIN 1.00
PF03144GTP_EFTU_D2 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG1957Inosine-uridine nucleoside N-ribohydrolaseNucleotide transport and metabolism [F] 2.00
COG2161Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM familyDefense mechanisms [V] 2.00
COG4118Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressorDefense mechanisms [V] 2.00
COG0080Ribosomal protein L11Translation, ribosomal structure and biogenesis [J] 1.00

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A61.00 %
All OrganismsrootAll Organisms39.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001593|JGI12635J15846_10514264Not Available705Open in IMG/M
3300002245|JGIcombinedJ26739_100510440Not Available1079Open in IMG/M
3300004121|Ga0058882_1008105Not Available570Open in IMG/M
3300004121|Ga0058882_1019401Not Available842Open in IMG/M
3300005591|Ga0070761_10207749All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1161Open in IMG/M
3300005591|Ga0070761_10238917All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium ailaaui1084Open in IMG/M
3300005591|Ga0070761_10741031Not Available616Open in IMG/M
3300006176|Ga0070765_100153587All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2055Open in IMG/M
3300006176|Ga0070765_101041022Not Available774Open in IMG/M
3300006893|Ga0073928_10346426All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1101Open in IMG/M
3300009633|Ga0116129_1118765Not Available759Open in IMG/M
3300009665|Ga0116135_1023609All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2104Open in IMG/M
3300009701|Ga0116228_10672194Not Available700Open in IMG/M
3300010854|Ga0126360_1076554Not Available555Open in IMG/M
3300010857|Ga0126354_1222089Not Available532Open in IMG/M
3300010865|Ga0126346_1167033Not Available685Open in IMG/M
3300010880|Ga0126350_10519519Not Available675Open in IMG/M
3300011120|Ga0150983_10771980Not Available768Open in IMG/M
3300011120|Ga0150983_12164214Not Available692Open in IMG/M
3300011120|Ga0150983_12345770Not Available907Open in IMG/M
3300011120|Ga0150983_12727378Not Available662Open in IMG/M
3300011120|Ga0150983_13048731Not Available513Open in IMG/M
3300011120|Ga0150983_15431904Not Available770Open in IMG/M
3300012683|Ga0137398_10102511All Organisms → cellular organisms → Bacteria1803Open in IMG/M
3300012924|Ga0137413_10113981Not Available1710Open in IMG/M
3300012929|Ga0137404_11792913Not Available571Open in IMG/M
3300012930|Ga0137407_10675976All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae972Open in IMG/M
3300012944|Ga0137410_11793697Not Available541Open in IMG/M
3300014201|Ga0181537_10061843All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2538Open in IMG/M
3300014495|Ga0182015_10045768All Organisms → cellular organisms → Bacteria3235Open in IMG/M
3300014495|Ga0182015_10109004Not Available1914Open in IMG/M
3300014495|Ga0182015_10263659All Organisms → cellular organisms → Bacteria → Acidobacteria1135Open in IMG/M
3300014495|Ga0182015_10612044Not Available690Open in IMG/M
3300014499|Ga0182012_10359869Not Available968Open in IMG/M
3300014501|Ga0182024_10039938All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae7751Open in IMG/M
3300014501|Ga0182024_10262644All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2306Open in IMG/M
3300014501|Ga0182024_12361865Not Available577Open in IMG/M
3300014654|Ga0181525_10640732All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria594Open in IMG/M
3300018038|Ga0187855_10810736Not Available546Open in IMG/M
3300018042|Ga0187871_10791660Not Available529Open in IMG/M
3300019786|Ga0182025_1238248All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1925Open in IMG/M
3300020582|Ga0210395_10802303Not Available702Open in IMG/M
3300021180|Ga0210396_11205697Not Available633Open in IMG/M
3300021406|Ga0210386_10343887All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1282Open in IMG/M
3300021406|Ga0210386_10628789Not Available927Open in IMG/M
3300021407|Ga0210383_11691967Not Available518Open in IMG/M
3300022713|Ga0242677_1055321Not Available592Open in IMG/M
3300022840|Ga0224549_1039517Not Available640Open in IMG/M
3300023056|Ga0233357_1037356Not Available613Open in IMG/M
3300025612|Ga0208691_1014476All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1923Open in IMG/M
3300027002|Ga0209110_1050086Not Available510Open in IMG/M
3300027517|Ga0209113_1017468Not Available940Open in IMG/M
3300027652|Ga0209007_1129017Not Available631Open in IMG/M
3300027676|Ga0209333_1088828Not Available845Open in IMG/M
3300027692|Ga0209530_1008415All Organisms → cellular organisms → Bacteria3273Open in IMG/M
3300027729|Ga0209248_10100012All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae875Open in IMG/M
3300027768|Ga0209772_10032834Not Available1513Open in IMG/M
3300027884|Ga0209275_10216947All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1040Open in IMG/M
3300027895|Ga0209624_10223333All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1252Open in IMG/M
3300027908|Ga0209006_11262638Not Available573Open in IMG/M
3300028780|Ga0302225_10004655All Organisms → cellular organisms → Bacteria7685Open in IMG/M
3300028780|Ga0302225_10517755Not Available556Open in IMG/M
3300028789|Ga0302232_10336119Not Available744Open in IMG/M
3300028798|Ga0302222_10427042Not Available518Open in IMG/M
3300028906|Ga0308309_10247917All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1489Open in IMG/M
3300029943|Ga0311340_10220787All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1883Open in IMG/M
3300029943|Ga0311340_10349537All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1382Open in IMG/M
3300029943|Ga0311340_10779814Not Available809Open in IMG/M
3300029944|Ga0311352_10873585Not Available698Open in IMG/M
3300029999|Ga0311339_11055993Not Available756Open in IMG/M
3300030007|Ga0311338_10373059All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1542Open in IMG/M
3300030007|Ga0311338_10891498Not Available875Open in IMG/M
3300030043|Ga0302306_10102200Not Available1111Open in IMG/M
3300030054|Ga0302182_10500371Not Available505Open in IMG/M
3300030058|Ga0302179_10187497Not Available914Open in IMG/M
3300030503|Ga0311370_10390741All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1753Open in IMG/M
3300030520|Ga0311372_12620240Not Available561Open in IMG/M
3300030524|Ga0311357_10170823All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2140Open in IMG/M
3300030524|Ga0311357_10393776All Organisms → cellular organisms → Bacteria1309Open in IMG/M
3300030618|Ga0311354_11294396Not Available654Open in IMG/M
3300030730|Ga0307482_1255340Not Available551Open in IMG/M
3300030872|Ga0265723_1020311Not Available568Open in IMG/M
3300031028|Ga0302180_10061397All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2236Open in IMG/M
3300031234|Ga0302325_10185853All Organisms → cellular organisms → Bacteria3616Open in IMG/M
3300031234|Ga0302325_10718294All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1433Open in IMG/M
3300031234|Ga0302325_11457139Not Available885Open in IMG/M
3300031234|Ga0302325_12283723Not Available655Open in IMG/M
3300031234|Ga0302325_13355702Not Available506Open in IMG/M
3300031236|Ga0302324_100518028All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1736Open in IMG/M
3300031236|Ga0302324_102672721Not Available604Open in IMG/M
3300031708|Ga0310686_103051713All Organisms → cellular organisms → Bacteria3173Open in IMG/M
3300031708|Ga0310686_103170208All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1172Open in IMG/M
3300031708|Ga0310686_103456784All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2022Open in IMG/M
3300031708|Ga0310686_115705321All Organisms → cellular organisms → Bacteria6415Open in IMG/M
3300031708|Ga0310686_118968210Not Available699Open in IMG/M
3300031708|Ga0310686_118990117Not Available797Open in IMG/M
3300031753|Ga0307477_10673368Not Available694Open in IMG/M
3300032515|Ga0348332_10665550All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1410Open in IMG/M
3300034124|Ga0370483_0092666All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae989Open in IMG/M
3300034163|Ga0370515_0023807All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2797Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa27.00%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil17.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil7.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil7.00%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil7.00%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil5.00%
PalsaEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa4.00%
PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost4.00%
Boreal Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil4.00%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland3.00%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland2.00%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil2.00%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog2.00%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil2.00%
Untreated Peat SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil2.00%
Iron-Sulfur Acid SpringEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring1.00%
BogEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Bog1.00%
SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Soil1.00%
Plant LitterEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter1.00%
Host-AssociatedHost-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated1.00%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001593Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2EnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300004121Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF109 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005591Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1EnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300006893Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaGEnvironmentalOpen in IMG/M
3300009633Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_10EnvironmentalOpen in IMG/M
3300009665Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10EnvironmentalOpen in IMG/M
3300009701Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum fallax MGHost-AssociatedOpen in IMG/M
3300010854Boreal forest soil eukaryotic communities from Alaska, USA - W4-3 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300010857Boreal forest soil eukaryotic communities from Alaska, USA - W1-3 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300010865Boreal forest soil eukaryotic communities from Alaska, USA - C3-3 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300010880Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300011120Combined assembly of Microbial Forest Soil metaTEnvironmentalOpen in IMG/M
3300012683Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaGEnvironmentalOpen in IMG/M
3300012924Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012944Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014201Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaGEnvironmentalOpen in IMG/M
3300014495Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaGEnvironmentalOpen in IMG/M
3300014499Permafrost microbial communities from Stordalen Mire, Sweden - 612S2S metaGEnvironmentalOpen in IMG/M
3300014501Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014654Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaGEnvironmentalOpen in IMG/M
3300018038Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10EnvironmentalOpen in IMG/M
3300018042Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10EnvironmentalOpen in IMG/M
3300019786Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction)EnvironmentalOpen in IMG/M
3300020582Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-OEnvironmentalOpen in IMG/M
3300021180Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-OEnvironmentalOpen in IMG/M
3300021406Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-OEnvironmentalOpen in IMG/M
3300021407Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-OEnvironmentalOpen in IMG/M
3300022713Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022840Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 1-5EnvironmentalOpen in IMG/M
3300023056Soil microbial communities from Shasta-Trinity National Forest, California, United States - GEON-SFM-MS2EnvironmentalOpen in IMG/M
3300025612Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10 (SPAdes)EnvironmentalOpen in IMG/M
3300027002Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027517Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027652Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300027676Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes)EnvironmentalOpen in IMG/M
3300027692Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027729Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)EnvironmentalOpen in IMG/M
3300027768Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM1 (SPAdes)EnvironmentalOpen in IMG/M
3300027884Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)EnvironmentalOpen in IMG/M
3300027895Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027908Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300028780Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2EnvironmentalOpen in IMG/M
3300028789Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_3EnvironmentalOpen in IMG/M
3300028798Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_2EnvironmentalOpen in IMG/M
3300028906Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)EnvironmentalOpen in IMG/M
3300029943I_Palsa_N3 coassemblyEnvironmentalOpen in IMG/M
3300029944II_Palsa_E1 coassemblyEnvironmentalOpen in IMG/M
3300029999I_Palsa_E3 coassemblyEnvironmentalOpen in IMG/M
3300030007I_Palsa_E1 coassemblyEnvironmentalOpen in IMG/M
3300030043Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_1EnvironmentalOpen in IMG/M
3300030054Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_1EnvironmentalOpen in IMG/M
3300030058Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_1EnvironmentalOpen in IMG/M
3300030503III_Palsa_E3 coassemblyEnvironmentalOpen in IMG/M
3300030520III_Palsa_N2 coassemblyEnvironmentalOpen in IMG/M
3300030524II_Palsa_N3 coassemblyEnvironmentalOpen in IMG/M
3300030618II_Palsa_E3 coassemblyEnvironmentalOpen in IMG/M
3300030730Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030872Metatranscriptome of plant litter microbial communities from Maridalen valley, Oslo, Norway - NLI5 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031028Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_2EnvironmentalOpen in IMG/M
3300031234Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2EnvironmentalOpen in IMG/M
3300031236Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031753Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515EnvironmentalOpen in IMG/M
3300032515FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)EnvironmentalOpen in IMG/M
3300034124Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_06D_14EnvironmentalOpen in IMG/M
3300034163Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12635J15846_1051426423300001593Forest SoilLERWGGELDEARPVHVETGPRSPRRKWIALGLLVVLAGLAVKTIDPGKVRSVVLLLLVFFALRIALTAAASR*
JGIcombinedJ26739_10051044043300002245Forest SoilMWIGLGLLVVLCGLAAKTMDPGKLRSAVLLLLGFFAVRIVLAGFASR*
Ga0058882_100810523300004121Forest SoilMWVGLGILAVLSGLAAGTMDPGRLRLAVLVLLGFFAVRIVLAGLASR*
Ga0058882_101940113300004121Forest SoilVHVETGPRSAGRKWIALAILVALAGLAVKTIDPGRVRSVVLLLLGFFALRIVLTASASR*
Ga0070761_1020774913300005591SoilMWIGLGLLVLLCGLAAKTMDPGKLRSAVLLLLGFFAVRIVLAGFAS
Ga0070761_1023891733300005591SoilLALCGLAVKTIDPGRVRLVVLLLLGFFALRIVLTASASR*
Ga0070761_1074103113300005591SoilMALSPGQRKWISLGLLLLLCGLAVKTIDPGKVRLVVLLLLGVFALRIVLTASASR*
Ga0070765_10015358713300006176SoilMALGLLVVLCGLAVKTIDPGKVRSVVLLLLGFFALRIVLTGFASR*
Ga0070765_10104102223300006176SoilMALSPGQRKWISLGLLLLLCGLAVKTIDPSKVRLVVLLLLGVFALRIVLTASASR*
Ga0073928_1034642623300006893Iron-Sulfur Acid SpringMWLALGLLVVFCGLAVKTIDPGKIRTVVLVLLAFFAVRIVLMGLASR*
Ga0116129_111876523300009633PeatlandLERWGGELDEARPVHVETGPRSARRKWIALGLLVVLAGLAVKTIDPGKVRSVVLLLLGFFALRIVLTASASR*
Ga0116135_102360923300009665PeatlandMDLGPGSPGRKWISLGLLVVLCGLAVKTIDPGKVRSAVLLLLGFFALRIVLTGFASR*
Ga0116228_1067219443300009701Host-AssociatedMWVALVLLAALSGLAVKTIDPGKVRMVVLLLLGFFAVRIVLATLASR*
Ga0126360_107655423300010854Boreal Forest SoilMWIALGLLVLFCGLAVKTIDPGKIRTVVLVLLAFFAVRIVLMGLASR*
Ga0126354_122208913300010857Boreal Forest SoilMWIALGLLVVFCGLAIKTIDPGKIRTVVLVLLAFFAVRIVLMGLASR*
Ga0126346_116703323300010865Boreal Forest SoilMWIALGLLVVFCGFAVKTIDPGKIRTVVLVLLAFFAVRIVLMGLASR*
Ga0126350_1051951913300010880Boreal Forest SoilMWLALGLLVVFCGFAVKTIDPGKIRTVVLVLLAFFAVRIVLMGLASR*
Ga0150983_1077198023300011120Forest SoilMWMSLALLVVLCGLAVKTIDPGKVRSVVLLLLGFFALRIVLTGFASR*
Ga0150983_1216421433300011120Forest SoilMWILLGLLVVLCGLAVKTIDPGKVRSAVLLLLGFFALRIMLTGFASR*
Ga0150983_1234577043300011120Forest SoilMWIGLGLLVLLCGLAAKTMDPGKLRSAVLLLLGFFAVRIVLAGFASR*
Ga0150983_1272737823300011120Forest SoilLDEVRPVHVETGPRSAGRKWIALAILVALAGLAVKTIDPGRVRSVVLLLLGFFALRIVLTASASR*
Ga0150983_1304873113300011120Forest SoilMALSPGQRKWISLGLLLLLCGLTVKTIDPGKVRSVVLLLLGVFALR
Ga0150983_1543190413300011120Forest SoilWIALGLLVALACLAVKTIDPGKVRSVVLLLLDFFALRIVLAAAASR*
Ga0137398_1010251113300012683Vadose Zone SoilSPGRMWIALGFLVVFCGLAVKTIDPGKIRTVVLVLLAFFAVRIVLMGLASR*
Ga0137413_1011398123300012924Vadose Zone SoilMWIALGLLVVFCGLAVKTIDPGKVRTVVLVLLAFFAVRIVLMGLASR*
Ga0137404_1179291313300012929Vadose Zone SoilMWIALGLLVVFCGLAVKTIDPGKIRTVVFVLLAFFAVRIVLMGLA
Ga0137407_1067597623300012930Vadose Zone SoilMWIALGLLVAFCGLAVKTIDPGKVRTVVLVLLAFFAVRIVLMGLASR*
Ga0137410_1179369713300012944Vadose Zone SoilMWIALGLLVAFCGLAVKTIDPGKIRTVVLVLLAFFAVRIVLMGLASR*
Ga0181537_1006184353300014201BogMEPGFGVGSSGRLWIALLGLALVAGLTVETVDPGKIRTVVLVLLAFFAVRIVLTASASR*
Ga0182015_1004576863300014495PalsaMWIGLGVLVVLCGLAAKTMDPGKLRSAVLLLLGFFAVRIVLAGFASR*
Ga0182015_1010900443300014495PalsaMWIALGLLVIFCGLAVKTIDPGRIRTVVLVLLAFFAVRIVLMGLASR*
Ga0182015_1026365943300014495PalsaMWMALAMLLVLCGLAVKTIDPGKVRTVVLLLLGFFALRIVLTGFASR*
Ga0182015_1061204413300014495PalsaMWIALGLLVVFCGLAVKTIDPGKIRTVVLVLLAFFAVRIVLMGLASR*
Ga0182012_1035986923300014499BogMALSQGQRKWISLGLLLLLCGLTVKTIDPGKVRSVVLLLLGVFALRIMLTASASR*
Ga0182024_1003993863300014501PermafrostMWMALALLVVLCGLTVKTIDPGKVRSVVLVLLGFFALRIVLTGFASR*
Ga0182024_1026264463300014501PermafrostMWMALGLLVVLCGLAVKTIDPGKIRTVVFVLLAFFAVRIVLTGLASR*
Ga0182024_1236186533300014501PermafrostMGVSEGRPAGRKWIALGLLLALCGLAVKTIDPGRVRLVVLLLLGFFALRIVLTASASR*
Ga0181525_1064073233300014654BogMDLAPGSPGRKWISLGLLVVLCGLAVKTIDPGKVRSAVLLLLGFFALRIVLTGFASR*
Ga0187855_1081073623300018038PeatlandLETGPRSPGRKWIALGLLAALAGLALKTIDPGEVRSVVLLLLVFFALRIVLTALASR
Ga0187871_1079166013300018042PeatlandVDVETGPRSAGRKWIALALLVALAGLAVKTIDPGRVRSVVLLLLGFFALRIALTAPASR
Ga0182025_123824853300019786PermafrostLGAGITGAKWIALALLVAISGLAVKTIDPGKNPHGGVAVAGVFALRIVLTASASR
Ga0210395_1080230323300020582SoilLDEARPVHVETGPRSAGRKWIALAILVALAGLAVKTIDPGRVRSVVLLLLGFFALRIVLTAAASR
Ga0210396_1120569723300021180SoilMWVGLGILAVLSGLAAGTMDPGRLRLAVLVLLGFFAVRIVLAGLASR
Ga0210386_1034388753300021406SoilMWIGLGLLVLLCGLAAKTMDPGKLRSAVLLLLGFFAVRIVLAGFASR
Ga0210386_1062878913300021406SoilRPVHVETGPRSAGRKWIALAILVALAGLAVKTIDPGRVRSVVLLLLGFFALRIVLTASAS
Ga0210383_1169196733300021407SoilMDLTPGSPGRKWISLGLLVVLCGLAVKTIDPGKVRSAVLLLLGFFALRIVLTGFASR
Ga0242677_105532113300022713SoilMDLAPGSPGRKWISLGLLVVLCGLAVKTIDPGKVRSAVLLLLGFFALRIVLTGFASR
Ga0224549_103951733300022840SoilMWIGLGVLVVLCGLAAKTMDPGKLRSAVLLLLGFFAVRIVLAGFASR
Ga0233357_103735623300023056SoilMWMALGLLVVLCGLAVKTIDPGKVRSVVLLLLGFFALRIVLTGFASR
Ga0208691_101447643300025612PeatlandMDLGPGSPGRKWISLGLLVVLCGLAVKTIDPGKVRSAVLLLLGFFALRIVLTGFASR
Ga0209110_105008633300027002Forest SoilMWIGLGLLVVLCGLAAKTMDPGKLRSAVLLLLGFFAVRIVLAGFASR
Ga0209113_101746833300027517Forest SoilMNLAPGSRARMWIGLGLLVVLCGLAAKTMDPGKLRSAVLLLLGFFAVRIVLAGFASR
Ga0209007_112901743300027652Forest SoilNVGVGNLDEARPVHVETGPRSAGRKWIALAILVALAGLAVKTIDPGRVRSVVLLLLGFFALRIVLTATASR
Ga0209333_108882823300027676Forest SoilAILVALAGLAVKTIDPGRVRSVVLLLLGFFALRIVLTATASR
Ga0209530_100841553300027692Forest SoilLERWGGELDEARPVHVETGPRSPRRKWIALGLLVVLAGLAVKTIDPGKVRSVVLVLLVFFALRIALTAAASR
Ga0209248_1010001243300027729Bog Forest SoilLGLLVALACLAVKTIDPGKVRSVVLLLLGFFALRIVLAAAASR
Ga0209772_1003283443300027768Bog Forest SoilLETGPRSPGRKWIALGLLLALAGLAVKTIDPGKVRSVVLLLLGFFALRIVLAAAASR
Ga0209275_1021694743300027884SoilMDIGPRSPGRMWMALGLLVVLCGLAVKTIDPGKVRSVVLLLLGFFALRIVLTGFASR
Ga0209624_1022333323300027895Forest SoilMETGPRSPGRTWIALGLLVVLAGLAVKTIDPGKVRSVVLLLLGFFALRIALTAFASR
Ga0209006_1126263823300027908Forest SoilMWVSLGFLLLLCGLAVKTIDPGKIRSVVFVLLGFFAVRIVLTGFASR
Ga0302225_10004655103300028780PalsaMWIGLGVLVLLCGLAAKTMDPGKLRSAVLLLLGFFAVRIVLAGFASR
Ga0302225_1051775513300028780PalsaVDGETGPRSAGRKWIALALLLALAGLAVKTIDPGRVRSVVLLLLGFFALRIALTATASR
Ga0302232_1033611923300028789PalsaMNLEPGSRARMWIGLGVLVVLCGLAAKTMDPGKLRSAVLLLLGFFAVRIVLAGFASR
Ga0302222_1042704213300028798PalsaLGPGSPGRKWISLGLLVVLCGLAVKTIDPGKVRSAVLLLLGFFALRIVLTGFASR
Ga0308309_1024791763300028906SoilWKMDIGPRSPGRMWMALGLLVVLCGLAVKTIDPGKVRSVVLLLLGFFALRIVLTGFASR
Ga0311340_1022078743300029943PalsaMWMALGLLVVLCGLAVKTIDPGKIRTVVLLLLAFFALRIVFTGLASR
Ga0311340_1034953723300029943PalsaMWMSLALLLVLCGLAVKTIDPGKVRSVVLLLLGFFALRIVLTGYASR
Ga0311340_1077981423300029943PalsaMWIGLGVLVVLCGLAARTMDPGKLRSAVLLLLGFFAVRIVLAGFASR
Ga0311352_1087358513300029944PalsaMETGPRSPRRKWIALGLLVVLAGLAVKTIDPGKVRSVVLLLLVFFALRIALTAAASR
Ga0311339_1105599313300029999PalsaLDEARPVHVETGPRSAGRKWIALAILVALAGLAVKTIDPGRVRSVVLLLLGFFALRVVLTASASR
Ga0311338_1037305953300030007PalsaRKWIALGLLVALAGLALKTIDPGKVRSVVLLLLGFFALRIVLTASASR
Ga0311338_1089149833300030007PalsaMWIGLGLLVMLCGLAAKTMDPGKLRSAVLLLFGFFAVRIVLAGFASR
Ga0302306_1010220023300030043PalsaMWIGLGVLVVLCGLAAKTMDPGKLRSAVLLLLGFFAVLIVLAGFASR
Ga0302182_1050037123300030054PalsaMNLEPGSRARMWIGLGVLVLLCGLAAKTMDPGKLRSAVLLLLGFFAVRIVLAGFASR
Ga0302179_1018749733300030058PalsaVHVETGPRSPGRKWIALGLLVALACLAVKTIDPGKVRSVVLLLLGFFALRIVLTASASR
Ga0311370_1039074153300030503PalsaRFESSPVHHGLERWGGELDEARPVHMETGPRSPRRKWIALGLLVVLAGLAVKTIDPGKVRSVVLLLLVFFALRIALTAAASR
Ga0311372_1262024013300030520PalsaLALAGLAVKTIDPGRVRSVVLLLLGFFALRIALTAPASR
Ga0311357_1017082363300030524PalsaVHHGLERWGGELDEARPVHMETGPRSPRRKWIALGLLVVLAGLAVKTIDPGKVRSVVLLLLVFFALRIALTAAASR
Ga0311357_1039377663300030524PalsaLLLVLCGLAVKTIDPGKVRSVVLLLLGFFALRIVLTGYASR
Ga0311354_1129439623300030618PalsaLDEVRPVHVETGPRSAGRKWIALAILVALAGLAVKTIDPGRVRSVVLLLLGFFALRVVLTASASR
Ga0307482_125534033300030730Hardwood Forest SoilMETGLRSPGRKWIALGMLLVLAGLAVKTIDPGRVRSVVLLLLGFFALRIALTAFASR
Ga0265723_102031113300030872SoilRKWISLGLLLLLCGLTVKTIDPGKVRSVVLLLLGVFALRIVLTASASR
Ga0302180_1006139753300031028PalsaLDEAKPVHVETGPRSPGRKWIALGLLVALACLAVKTIDPGKVRSVVLLLLGFFALRIVLTASASR
Ga0302325_1018585363300031234PalsaMALSPGQRKWISLGLLLLLCGLTVKTIDPGKVRSVVLLLLGVFALRIVLTASASR
Ga0302325_1071829453300031234PalsaVDGETGPRSAGRKWIALALLLALAGLAVKTIDPGRVRSVVLLLLGFFALRIALTAPASR
Ga0302325_1145713933300031234PalsaVHVETGPRSPGRKWIALGLLVALAGLALKTIDPGKVRSVVLLLLGFFALRIVLTASASR
Ga0302325_1228372343300031234PalsaPGSPGRKWISLGLLVVLCGLAVKTIDPGKVRSAVLLLLGFFALRIVLTGFASR
Ga0302325_1335570233300031234PalsaRMWIALGLLVIFCGLAVKTIDPGKIRTVVLVLLAFFAVRIVLMGLASR
Ga0302324_10051802823300031236PalsaMWIALGLLVIFCGLAVKTIDPGKIRTVVLVLLAFFAVRIVLMGLASR
Ga0302324_10267272123300031236PalsaLGEAGPVHVETGPRSAGRKWIAFGLLLALAGLAVKTIDPGRVRSVVLLLLGFFALRIVLTASASR
Ga0310686_10305171323300031708SoilMMDLGPRSPGRMWMALGLLVVFCGLAVKTIDPGKIRTVVLVLLAFFAVRIVLMGLASR
Ga0310686_10317020853300031708SoilMGVSEGRPAGRKWIALGLLLMLCGLAVKTIDPGRVRLVVLLLLGFFALRIVLTASASR
Ga0310686_10345678413300031708SoilICRSLELRRFESSPVHHGLKRWSGKLDQAGPVHVETGPRSPRRKWIALGLLVVLAGLAVKTIDPGKVRSVVLLLLVFFALRILLTAFASR
Ga0310686_11570532123300031708SoilMDLGPRSPGRMWMALAMLLVLCGLTVKTIDPGKVRTVVLLLLGFFALRILLTGFASR
Ga0310686_11896821023300031708SoilLDEARPVHVETGPRSAGRKWIALAILVALAGLAVKTIDPGRVRSVVLLLLGFFALRIVLTASASR
Ga0310686_11899011733300031708SoilMNLAPGSRARMWIGLGLLVTLCGLAAKTMDPGKLRSAVLLLLGFFAVRIVLAGFASR
Ga0307477_1067336823300031753Hardwood Forest SoilMDLGPRSPGRMWMALGFLVVLCGLAVKTIDPGKVRSVVLLLLGFFALRIVLTGFASR
Ga0348332_1066555053300032515Plant LitterMNLAPGSRARMWIGLGLLVVLCGLAAKTLDPGKVRSAVLLLLGFFAVRIVLAGFASR
Ga0370483_0092666_803_9463300034124Untreated Peat SoilMWVGLGLLGLFCGLAVKTMDPGRIRSVVLLLLGFFAVRIVLAGLASR
Ga0370515_0023807_1394_15373300034163Untreated Peat SoilMWIALGLLVVFCGFAVKTIDPGKIRTVVLVLLAFFAVRIVLMGLASR

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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