Metagenome Family F105609

Basic Information
Family ID	F105609
Family Type	Metagenome
Number of Sequences	100
Average Sequence Length	52 residues
Representative Sequence	MIRSFTVVALMCMTSGETATAFDLKETLKDLMPCKYAAIRLCERPQQVSAAALWK
Number of Associated Samples	78
Number of Associated Scaffolds	100

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	3.00 %
% of genes from short scaffolds (< 2000 bps)	2.00 %
Associated GOLD sequencing projects	69
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (99.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (21.000 % of family members)
Environment Ontology (ENVO)	Unclassified (36.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (79.000 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 49.09% β-sheet: 10.91% Coil/Unstructured: 40.00%
Feature Viewer

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Pfam ID	Name	% Frequency in 100 Family Scaffolds
PF09361	Phasin_2	26.00
PF01575	MaoC_dehydratas	1.00
PF13545	HTH_Crp_2	1.00
PF00072	Response_reg	1.00
PF07690	MFS_1	1.00
PF00196	GerE	1.00
PF00534	Glycos_transf_1	1.00
PF11953	DUF3470	1.00
PF17158	MASE4	1.00
PF03073	TspO_MBR	1.00
PF00325	Crp	1.00

COG ID	Name	Functional Category	% Frequency in 100 Family Scaffolds
COG3476	Tryptophan-rich sensory protein TspO/CrtK (mitochondrial benzodiazepine receptor homolog)	Signal transduction mechanisms [T]	1.00

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.00 %
All Organisms	root	All Organisms	1.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.00 %
cellular organisms	root	All Organisms → cellular organisms	1.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.00 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.00 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.00 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.00 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.00 %

Scaffold	Taxonomy	Length	IMG/M Link
3300012985\|Ga0164308_10637216	Not Available	911	Open in IMG/M
3300012989\|Ga0164305_10378521	Not Available	1076	Open in IMG/M
3300015371\|Ga0132258_10063137	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8550	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	66.00%
Environmental	Environmental	34.00%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	66.00%
Terrestrial	Environmental → Terrestrial	34.00%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	55.00%
Soil	Environmental → Terrestrial → Soil	34.00%
Rhizoplane	Host-Associated → Plants → Rhizoplane	11.00%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	43.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	23.00%
Soil	Host-Associated → Plants → Rhizosphere → Soil	12.00%
Loam	Environmental → Terrestrial → Soil → Loam	11.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	9.00%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.00%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	43.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	12.00%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	11.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	9.00%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.00%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.00%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.00%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	21.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	14.00%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	9.00%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	9.00%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	8.00%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	7.00%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	5.00%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	5.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.00%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.00%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	2.00%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.00%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.00%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.00%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	1.00%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.00%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.00%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	1.00%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.00%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.00%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.00%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.00%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2209111006	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Wild type Col-0	Host-Associated	Open in IMG/M
3300002128	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5	Environmental	Open in IMG/M
3300005148	Soil and rhizosphere microbial communities from Laval, Canada - mgLMA	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009092	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012497	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.2.old.240510	Host-Associated	Open in IMG/M
3300012510	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.9.old.080610	Host-Associated	Open in IMG/M
3300012511	Unplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.080610_10	Environmental	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028715	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
2213686273	2209111006	Arabidopsis Rhizosphere	MIRSVTVVALMWITSGEAATAFDLKKTLTDLMPCKYAAIRLCERPHQLSAAALWRCGATLAAAPQ
JGI24036J26619_100596971	3300002128	Corn, Switchgrass And Miscanthus Rhizosphere	MIRSVTVVALMWITSGEAATAFDLKKTLTDLMPCKYAAIRLCE
Ga0066819_10191452	3300005148	Soil	MIRSFTVVALMCMTSGETATAFDLKQILKDLMPCKYAAIR
Ga0065704_101692883	3300005289	Switchgrass Rhizosphere	MCITSGETATAFDLKKTLKDLMPCKYAAIRLCERPQEAGAAALWKCGATLAAAPQEEIVK
Ga0070669_1013639472	3300005353	Switchgrass Rhizosphere	MIRSVTVVALMWITSGEAATAFDLKKTLTDLMPCKYAAIRLCERPQ
Ga0070675_1009138642	3300005354	Miscanthus Rhizosphere	MIRLFMVVALMCITCGEPATAFDLKKTLKDLMPCKYAAIRLCERPQEVGA
Ga0070673_1007224383	3300005364	Switchgrass Rhizosphere	MTSGETATAFDLKKILIDLLCERPQQVSAAALWKCGATLAAAPQEEIG
Ga0070659_1003189623	3300005366	Corn Rhizosphere	MIRLFMVVALMCITCGEPATAFDLKKTLKDLMPCKYAAIRLCERPQEVGAAALWKCGATLAAA
Ga0070711_1001876745	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MIRSFTVVALMCMTSGETATAFDLKETLKDLMPCKYAAIRLC
Ga0070684_1005455833	3300005535	Corn Rhizosphere	MIRSFTVVALMYMTSGETATAFDLTKTLKDLMPCKYAAIRLCERPQ
Ga0070665_1006098563	3300005548	Switchgrass Rhizosphere	MIRSFTVVALMCMTSGETATAFDLKETLKDLMPCKYAAIRLCERHQPVSAAALWKCGATLAAAPQ
Ga0070665_1006310803	3300005548	Switchgrass Rhizosphere	MIRSFTVVALMCMTSGETATAFDLKGTLKDLMPCKYAAIRLCERHQPVSAAALWKCGATLAAAPQ
Ga0070665_1010916971	3300005548	Switchgrass Rhizosphere	MIRLFTVVALMCMTSGETATAFDLKKTIKDLMPCKYAAI
Ga0075417_102242093	3300006049	Populus Rhizosphere	MIRSFTVVALMYMTSGETATAFDLKNTLKDLMPCKYAAIRLCERPQQVSAAAL
Ga0075417_105272701	3300006049	Populus Rhizosphere	MIRSFTVVALMYMASGETATAFDLKNTLKDLMPCKYAAIRLCERPQQVSAAAL
Ga0075432_100250465	3300006058	Populus Rhizosphere	MIRSFTVVALMCMTSGETATAFDLNKTLKDLMPCKYAAIRLCERPQQVSAAALWKCGA
Ga0070712_1015911152	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MIRSFTVIALMCMTSGETATAFDLKETLKGLMPCKYAAIRLCER
Ga0070712_1019698921	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MVRSFTVVALMCMTSGETATAFDLKKILIDLLCERPQQVSAAALWKCGATLAAAPQEE
Ga0075428_1018622782	3300006844	Populus Rhizosphere	MIRSFTVVALMCMTSGETATAFDLKNTLKDLMPCKY
Ga0075428_1026957902	3300006844	Populus Rhizosphere	MIRSFTVVALMCMTSRETATAFDLKETLKDLMPCKYAAIRLCERP
Ga0075431_1015298182	3300006847	Populus Rhizosphere	MIRSFTVVALMYMTSGETATAFDLKNTLKDLMPCKY
Ga0075433_104441401	3300006852	Populus Rhizosphere	MIRSFTVVALMCMTSRETATAFDLKETLKDLMPCKYAAIRLCERPQQVSAAALWKCGATLAAAP
Ga0075434_10005131911	3300006871	Populus Rhizosphere	MIRSFTVVALMCMTSGETATAFDLKETLKDLMPCKYAAIRLCERPQ
Ga0075429_1012094532	3300006880	Populus Rhizosphere	MIRSFTVVALMCMTSGETATAFDLKETLKDLMPCKYAAIRLCERPQQVSAAALWK
Ga0075424_1009859033	3300006904	Populus Rhizosphere	MIRSFTVVALMCMTSGETATAFDLKQILKDLMPCKYAAIRLCERPQQVSAAALWKCGATL
Ga0075424_1027368162	3300006904	Populus Rhizosphere	MIRSFTVVALMCMTSGETATAFDLKETLKDLMPCKYAAIR
Ga0105250_102630901	3300009092	Switchgrass Rhizosphere	MVRAFTVVALMCMTSGGTATAFDLKETLKDLIPCKYAAIRLCERHQPVSAAALWKCGA
Ga0111539_120032742	3300009094	Populus Rhizosphere	MIRSFTVVALMYMTSGETATAFDLKNTLKDLMPCKYAAIRLCERPQQVSA
Ga0111539_124562491	3300009094	Populus Rhizosphere	MIRSFTVVALMCMTSRETATAFDLKETLKDLMPCKYAAIRLCERPQQVSAAALWKC
Ga0105245_100525156	3300009098	Miscanthus Rhizosphere	MIRSFTVVALMCMTSGETATAFDLKGTLKDLMPCKYAAIRLCERHQPVSAAALWKCGATLAAA
Ga0105245_106537771	3300009098	Miscanthus Rhizosphere	MIRSFTVVALMCMTSGETATAFDLKETLKDLMPCKYAAIRLCERHQPVSAAALWKCGATLAAA
Ga0075418_117210892	3300009100	Populus Rhizosphere	MIRSFTVVALMYMTSGETATAFDLKNTLKDLMPCKYAAIRLCERPQQVSAAALW
Ga0075418_122058982	3300009100	Populus Rhizosphere	MIRSFTVVALMYMASGETATAFDLKNTLKDLMPCKYAAIRLCERPQQVSAAALW
Ga0105247_106710141	3300009101	Switchgrass Rhizosphere	MIRSFTVVALMCMTSGETATAFDLKGTLKDLMPCKYAAIRLCERHQPVSAAALWKCGATL
Ga0114129_102176441	3300009147	Populus Rhizosphere	MIRSFTVVALMYMTSGETATAFDLKNTLKDLMPCKYA
Ga0105243_101377951	3300009148	Miscanthus Rhizosphere	MIRSVTVVALMWITSGEAATAFDLKKTLTDLMPCKYAAIR
Ga0111538_132720452	3300009156	Populus Rhizosphere	MVVALMCITCGEPATAFDLKKTLKDLMPCKYAAIRLCERPQEVGAAALWKCGATLAATPQEEIG
Ga0105241_111019251	3300009174	Corn Rhizosphere	MVRSFTVVALMCMTSGETATAFDLKKILIDLLCERPQQVSA
Ga0105242_101933851	3300009176	Miscanthus Rhizosphere	MIRSVTVVALIWITSGEAATAFDLKKTLTDLMPCKYAAIRLCERPHQLSAAALWRCGATLAAAPQ
Ga0105248_108200931	3300009177	Switchgrass Rhizosphere	MIRSFTVVALMCMTSGETATAFDLKGTLKDLMPCKYAAIRLCERHQPVSAAAL
Ga0105248_126458952	3300009177	Switchgrass Rhizosphere	MCMTSGETATAFDLKQILKDLMPCKYAAIRLCERPQQVSAAALWKCGATLAAAPQEEIG
Ga0105237_105671283	3300009545	Corn Rhizosphere	MIRLFMVVALMCITCGEPATAFDLKKTLKDLMPCKYAAIRLCERPQEVGAAALWK
Ga0105249_103098011	3300009553	Switchgrass Rhizosphere	MVRSFTVVALMCMTSGGTATAFDLKQILKDLMPCKYAAIRLCERPQQVSAAALWK
Ga0134121_123062321	3300010401	Terrestrial Soil	MIRSFTIIALMCVTSSETATAFDLTKTLKDLMPCKYAAIRLC
Ga0157319_10453262	3300012497	Arabidopsis Rhizosphere	MCMTSGETATAFDLKETLKDLMPCKYAAIRLCERHQPVSAAALWKCGATLAAAPQEE
Ga0157316_10247071	3300012510	Arabidopsis Rhizosphere	MIRSFTVVALACMTSGETATAFDLNETLKDLMPCKYAAIRLCERHQPLSAAALWKCG
Ga0157332_10450691	3300012511	Soil	MIRSFTVVALMCMTSGETATAFDLKKTLKDLMPCKYAAIRLCERPQHGGAAA
Ga0157302_102642411	3300012915	Soil	MVRSFTVVALMCMTSGETATAFDLKKILIDLLCERPQQVSAAALWKCGATLAAAPQEEI
Ga0164303_103261641	3300012957	Soil	MIRSFTVVALMYRTSGETATAFDLTKTLKDLMPCKYAAIRLCERPQQVSAAALWKCGATLAAAPQE
Ga0164299_104649291	3300012958	Soil	MIRLFTVVALMCMTSGETATAFDLKKTIKDLMPCKYAAIRLCERPQ
Ga0164301_101230544	3300012960	Soil	MIRSVTVVALMWITSGEAATAFDLKKTLTDLMPCKYAAIRLCERPHQLSAAA*
Ga0164301_103458001	3300012960	Soil	MIRLFTAVALIVMASGATTTAFDLKKILKDLMPCKYAAIRLCERPKEVGAAALWKC
Ga0164308_106372162	3300012985	Soil	MIRSFTVVALMCMTSGETATAFDLKETLKDLMPCKYAAIRLCERHQQVSHAALWRCGATLAAAPQE
Ga0164304_103577804	3300012986	Soil	MIRSFTVVALMCMTSGETATAFDLKQILKDLMPCKYAAIRLCERPQQVSAAALWKCGATLAAA
Ga0164307_108726991	3300012987	Soil	MVRSFTVVALMCMTSGETATAFDLKKILIDLLCERPQQVSAAALW
Ga0164306_110720572	3300012988	Soil	MIRSFAIVALMCITSGETATAFDLTKTLKDLMPCKY
Ga0164305_103785212	3300012989	Soil	MIRSFTVVALMCMTSGETATAFDLKETLKDLMPCKYAAIRLCERHQPVSAAALWKCGATLAAAPQE
Ga0157373_111571531	3300013100	Corn Rhizosphere	MIRSFTVVALMYMTSGETATAFDLTKTLKDLMPCKYAAIRLCE
Ga0157369_116830342	3300013105	Corn Rhizosphere	MIRSFTVVALVCMTSGETATAFDLKETLKDLMPCKYAAIRLCERHQPVSA
Ga0157374_106389971	3300013296	Miscanthus Rhizosphere	MIRSFTVVALMCMTSGETATAFDLKGTLKDLMPCKYAAIRLCERHQPVSAAALWKCGATLAA
Ga0157378_103344113	3300013297	Miscanthus Rhizosphere	MIRSVTVVALMWITSGEAATAFDLKKTLTDLMPCKYAAIRLCERTHQLSAAALWRCG
Ga0157375_101208405	3300013308	Miscanthus Rhizosphere	MCMTSGETATAFDLKETLKDLMPCKYAAIRLCERHQPVSAAALWKCGATLAAAPQE
Ga0157375_108554472	3300013308	Miscanthus Rhizosphere	MIRSFTVVALMCMTSGETATAFDLKGTLKDLMPCKYAAIRLCERHQPVSAAALWKCGATLAAAPQE
Ga0157379_101870521	3300014968	Switchgrass Rhizosphere	MIRLFTVVALMCMTSGETATAFDLKKTIKDLMPCKYAAIRLCERPQEVGAAALWKCGATLAAAPQEE
Ga0157376_100852565	3300014969	Miscanthus Rhizosphere	MIRSFTVVALMCMTSGETATAFDLKETLKDLMPCKYAAIRLCERHQPVSAAALWKCGATLAAAP
Ga0173483_102232682	3300015077	Soil	MIRSVTVVALMWITSGEAATAFDLKKTLTDLMPCKYAAIRLCERPQQVSAA
Ga0132258_1006313710	3300015371	Arabidopsis Rhizosphere	MIRSFTVVALMCMTSGETATAFDLTKILKDLMPCKYAAIRLCERPQGVSAAALWKCGATLAAAP
Ga0132258_104100271	3300015371	Arabidopsis Rhizosphere	MVVALMCMTSGETVTAFDLRETLKDLMPCKYAAIRLCERHQQVSAAALWKCGATLAAAPQ
Ga0132258_116189611	3300015371	Arabidopsis Rhizosphere	MAGGETATAFDLKKTLKDLMPCKYAAIRLCERPQHGGAAALWKCGATLAAAPQEE
Ga0132256_1025097881	3300015372	Arabidopsis Rhizosphere	MIRSFTVVALMYMTSGETATAFDLTKALKDLMPCKYAAIRLCERPQHASAADLWKCGATLAAAPQE
Ga0132257_1035808841	3300015373	Arabidopsis Rhizosphere	MIRSFTVVALMCMTSGETATAFDLKETLKDLMPCKYAA
Ga0132255_1021011971	3300015374	Arabidopsis Rhizosphere	MIRSFTVVALMCMTSGETATAFDLKETLKDLMPCKYAAI
Ga0132255_1041016332	3300015374	Arabidopsis Rhizosphere	MSLIIRSFTVVALMCMTSGETATALDLKETMKDLMPCKYAAIRLCERHQPVSAAALWKCG
Ga0132255_1050187121	3300015374	Arabidopsis Rhizosphere	MIRSFTVVALMCMTSGETATAFDLKKTIKDLMPCKYAAIRLCERPQEVGAAALWKCGATLAAAPQ
Ga0207663_104136851	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MIRLFTVVALMCMTSGETATAFDLKKTIKDLMPCKYAAIRLCERPQEVGAAAL
Ga0207663_104366971	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MIRSFTVVALMCMTSGETATAFDLKETLKDLIPCKYAAIRLCERHQQVS
Ga0207687_100108268	3300025927	Miscanthus Rhizosphere	MIRSFTVVALMCMTSGETATAFDLKGTLKDLMPCKYAAIRLCERHQPVSAAALWKCGATLAAAPQEE
Ga0207700_108713723	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MIRSFTVVALMCMTSGETATAFDLKGTLKDLMPCKYAAI
Ga0207700_115166311	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MIRSFTIVALMCMTNGEAATAFDLKKTLKDLMPCQYAAIRLCERPQQVSAAA
Ga0207700_116413771	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MIRLFTVVALMCMTSGETATAFDLKKTIKDLMPCKYAAIRLCERPQEV
Ga0207644_100118171	3300025931	Switchgrass Rhizosphere	MIRSFTVVALMCMTSGETATAFDLKGTLKDLMPCKYAAIR
Ga0207644_104162261	3300025931	Switchgrass Rhizosphere	MVRSFTVVALMCMTSGETATAFDLKKILIDLLCERPQQVSAAALWKCGATLAAAPQE
Ga0207711_103371841	3300025941	Switchgrass Rhizosphere	MIRLFTVVALMCMTSGETATAFDLKKTIKDLMPCKYAAIRLCERPQEVGAAALWKCG
Ga0207661_105879721	3300025944	Corn Rhizosphere	MVRSFTVVALMCMTSGETATAFDLKKILIDLLCERPQQVSAA
Ga0207712_119245411	3300025961	Switchgrass Rhizosphere	MVRSFTVVALMCMTSGETATAFDLKKILIDLLCER
Ga0207658_109135551	3300025986	Switchgrass Rhizosphere	MIRSFTVVALMCMTSGETATAFDLKKILIDLMPCKY
Ga0207708_115861951	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MIRLFTVVALMCMTSGETATAFDLKKTIKDLMPCKYAAIRLCERPQEVGAAALWKCGATLAA
Ga0207428_100403951	3300027907	Populus Rhizosphere	MIRSFTVVALMYMTSGETATAFDLKNTLKDLMPCKYAA
Ga0207428_106634521	3300027907	Populus Rhizosphere	MIRSFTVVALMCMTSGETATAFDLKETLKDLMPCKYAAIRLCEHHQPVSAAALWK
Ga0207428_109582762	3300027907	Populus Rhizosphere	MIRSFTVVALMCMASGETATAFDLKKNTLKDLMPCKYAAIRLCERPQQVSAAAL
Ga0209382_107647431	3300027909	Populus Rhizosphere	MIRSFTVVALMCMTSGETATAFDLKNTLKDLVPCK
Ga0268266_100417951	3300028379	Switchgrass Rhizosphere	MIRSFTVVALMCMTSGETATAFDLKETLKDLMPCKYAAIRLCERHQPVSAAALWKCGATLAAAPQEE
Ga0307313_101500611	3300028715	Soil	MIRSFTVVALMCMTSGETATAFDLTKTLKDLMPCEYAAIRLCERPQHVNAAA
Ga0307497_105865091	3300031226	Soil	MIRSFTVVALMCMTSGETATAFDLKETLKDLMPCKYAAIRLCERHQQ
Ga0170820_124706172	3300031446	Forest Soil	MIRSFTVVALMCMTSGETATAFDLKETLKDLMPCKYAAIRLCERHQQVS
Ga0310907_103892201	3300031847	Soil	MIRSFTVVALMYMTSGETATAFDLTKTLKDLMPCKYAAIRLCERPQHVSAADLWKCGA
Ga0310892_105791812	3300031858	Soil	MIRSFTVVALMCMTSGETATAFDLKETLKDLMPCK
Ga0310900_111532411	3300031908	Soil	MIRSFTVVALMCMTSGETATAFDLKETLKVLMPCKYAAMRLCERHQAV
Ga0310906_112151492	3300032013	Soil	MIRSVTVVALMWITSGEAATAFDLKKTLTDLMPCKHAAIRLCERPQQLSAAALWKCGATLAAAPQ
Ga0307470_108934341	3300032174	Hardwood Forest Soil	MIRLFMVVALMCITCGEPATAFDLKKTLKDLMPCKYAAIRLCERPQEV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F105609

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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