Metagenome / Metatranscriptome Family F105631

Basic Information
Family ID	F105631
Family Type	Metagenome / Metatranscriptome
Number of Sequences	100
Average Sequence Length	57 residues
Representative Sequence	MTTNNARSAFLRSYHLPAILLHYPRLVRAMQGIAMLNGMEAAACIRDLKAGRR
Number of Associated Samples	76
Number of Associated Scaffolds	100

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	1.00 %
% of genes from short scaffolds (< 2000 bps)	2.00 %
Associated GOLD sequencing projects	73
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (95.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (38.000 % of family members)
Environment Ontology (ENVO)	Unclassified (41.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.000 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 88.68% β-sheet: 0.00% Coil/Unstructured: 11.32%
Feature Viewer

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Pfam ID	Name	% Frequency in 100 Family Scaffolds
PF08281	Sigma70_r4_2	7.00
PF00210	Ferritin	7.00
PF16694	Cytochrome_P460	6.00
PF03824	NicO	3.00
PF00106	adh_short	2.00
PF15937	PrlF_antitoxin	2.00
PF00436	SSB	1.00
PF07730	HisKA_3	1.00
PF13561	adh_short_C2	1.00
PF10431	ClpB_D2-small	1.00
PF12728	HTH_17	1.00
PF02518	HATPase_c	1.00
PF07681	DoxX	1.00
PF13473	Cupredoxin_1	1.00

COG ID	Name	Functional Category	% Frequency in 100 Family Scaffolds
COG0629	Single-stranded DNA-binding protein	Replication, recombination and repair [L]	1.00
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	1.00
COG2965	Primosomal replication protein N	Replication, recombination and repair [L]	1.00
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	1.00
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	1.00
COG4270	Uncharacterized membrane protein	Function unknown [S]	1.00
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	1.00
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	1.00

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.00 %
All Organisms	root	All Organisms	5.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.00 %
cellular organisms	root	All Organisms → cellular organisms	5.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.00 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	5.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.00 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.00 %

Scaffold	Taxonomy	Length	IMG/M Link
3300007255\|Ga0099791_10031064	All Organisms → cellular organisms → Bacteria	2344	Open in IMG/M
3300012205\|Ga0137362_10183103	All Organisms → cellular organisms → Bacteria → Acidobacteria	1801	Open in IMG/M
3300012362\|Ga0137361_10003041	All Organisms → cellular organisms → Bacteria	10826	Open in IMG/M
3300020579\|Ga0210407_10749147	Not Available	755	Open in IMG/M
3300025915\|Ga0207693_10101898	All Organisms → cellular organisms → Bacteria	2251	Open in IMG/M
3300026304\|Ga0209240_1004974	All Organisms → cellular organisms → Bacteria	5019	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.00%
Host-Associated	Host-Associated	1.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	98.00%
Aquatic	Environmental → Aquatic	1.00%
Plants	Host-Associated → Plants	1.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	98.00%
Freshwater	Environmental → Aquatic → Freshwater	1.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	82.00%
Loam	Environmental → Terrestrial → Soil → Loam	16.00%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.00%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	58.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.00%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.00%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.00%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.00%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.00%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	38.00%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	17.00%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	11.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.00%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.00%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.00%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.00%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.00%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.00%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.00%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.00%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.00%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.00%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026371	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-B	Environmental	Open in IMG/M
3300027034	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027074	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF014 (SPAdes)	Environmental	Open in IMG/M
3300027326	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027548	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F14TC_1072339731	3300000559	Soil	VTTSNARSAFLRSYHLPAILRQYPRLIRAMQRVANLGHMEAALCIRELKAGRRWSGFAVDRY
JGI12627J18819_100667451	3300001867	Forest Soil	MTTANARRAFVRSYHLPTILTHYPRLVRAMRGVVALNGVEAAICIRDLKAGRRWSSEAVNRYGGTH
Ga0066388_1046923661	3300005332	Tropical Forest Soil	MTTRSARCAFLRSYQILSILTHYPRLVRAMRGIALLSGTEAAICIRDLKAGRRWS
Ga0070708_1003738223	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MTRKGARSAFLRSYHIPSILLHYPRLVRSMRRLAILDEMTAATCIRDLKAGRRWSSEAVNRYGGT
Ga0070707_1002656242	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MTTKGARSAFLRSYHIPSILLHYPRLVRSMRRLAILDEMTAATCIRDVKAGRRWS
Ga0070762_105835371	3300005602	Soil	MTTNNARSAFLRSYHLPAILLHYPRLVRAMQGIAMLNGMEAAACIRDLKAGRRWGTEAVN
Ga0070762_106612291	3300005602	Soil	MTTNDARAAFLRTYHIPAILVHYPRLVRAMQWVAGLNRAEAAACIRDLKAGH
Ga0066903_1040877641	3300005764	Tropical Forest Soil	SARCAFLRSYQILTVLTHDPRLVRSMRGIAMLSGTEAAICIRDFKAGRRWSIEAEGKAT*
Ga0070712_1007856711	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MTTNNARGAFLRSYHLPAILLHYPRLVRAMQGIAMLNGMEAAACIRDLKAGR
Ga0075436_1008432781	3300006914	Populus Rhizosphere	MTTKGARSAFLRSYHIPSILLHYPRLVRSMRRVAILDEMAAATCIRDLKARRRW
Ga0099791_100310644	3300007255	Vadose Zone Soil	MTTNNARRAFLRSYYLPAILLHYPRLVRAMQGIAMLNGIEAAACIRDLKAGRRWSSEAVNRYGGTHKGCD*
Ga0099793_102367762	3300007258	Vadose Zone Soil	MTTNNARRAFLRSYYLPAILLHYPRLVRAMQGIAMLNGIEAAACIRDLKAGRRWSK*
Ga0099794_105299561	3300007265	Vadose Zone Soil	NNARRAFLRSYYLPAILLHYPRLVRAMQGIAMLDGIEAAACIRDLKAGRRWSK*
Ga0126376_107422802	3300010359	Tropical Forest Soil	MTTHSARCAFLRSYQILTILTHYPRLVRSMRGIAMLSGSEAAICIRD
Ga0126378_120548351	3300010361	Tropical Forest Soil	MTTKHARRAFLRSYHVPAILINYPRLVRAMQSVAMLSGIEAASCIRDLK
Ga0126379_109966011	3300010366	Tropical Forest Soil	MTTRSARCAFLRSYQILSILTHYPRLVRAMRGIALLSGTEAAICIRDLKAGRR
Ga0126381_1006580731	3300010376	Tropical Forest Soil	MTTRSARCAFLRSYQILSILTHYPRLVRAMRGIALLSGTEAAICIRDLK
Ga0126381_1008337393	3300010376	Tropical Forest Soil	MTTRSARCAFLRSYQVLSILTHYPRLVRAMRGIALLSGT
Ga0126381_1024759791	3300010376	Tropical Forest Soil	MTTESARCAFLRSYQILTVLTHDPRLVRSMRGIAMLSGTEAAICIRDFKAGRRWSIEAKGKAT*
Ga0137391_100578834	3300011270	Vadose Zone Soil	MTTNNARRAFLRSYYLPAILLHYPRLVRAMRGIAMLNGIEAAACIRDLKAGRRWSSEAVNRYGGTHKGCD*
Ga0137363_103168192	3300012202	Vadose Zone Soil	MTTNNARGAFLRSYHLPAILLHYPRLVRAMQGIAMLNGMEAAACIRDLKAGRRWSSE
Ga0137363_108176302	3300012202	Vadose Zone Soil	MTTNNARRAFLRSYYLAILLHYPRLVRAMQGIAMMNGIEAAACIRDLKAGRRWSSEAVNRYGGTHKGCD*
Ga0137362_101831033	3300012205	Vadose Zone Soil	MTTNNARRAFLRSYYLAILLHYPRLVRAMQGIAMLNGIEAAACIRDLKAGRRSSSEALNRYGGTHKGCD*
Ga0137362_102026631	3300012205	Vadose Zone Soil	MTASNARSAFLRSYHLPAILLHYPRLVRAMQGIAMLNGMEAAACIRDLKAGRRWSSEA
Ga0137360_100431935	3300012361	Vadose Zone Soil	MTTNNARRAFLRSYYLAILLHYPRLVRAMQGIAMLNGIEAAACIRDLKAGRRWSSEAVNRYGGTHKGCD*
Ga0137360_102677442	3300012361	Vadose Zone Soil	MTTNNARSAFLRSYHLPAILLHYPRLVRAMQGIAMLNGMEAAACIRDLK
Ga0137361_100030414	3300012362	Vadose Zone Soil	MTTNNARRAFLRSYYLPAILLHYPRLVRAMQGIAMLNGIEAAACIRDLKAGRRSSSEALNRYGGTHKGCD*
Ga0137390_102165972	3300012363	Vadose Zone Soil	MTTNNARRAFLRSYYLPAILLHYPRLVRAMQGIAMLDGIEAAACIRDLKAGRRWSSEAVNRYGGTHKGCD*
Ga0137358_100461926	3300012582	Vadose Zone Soil	MTTNNARRAFLRSYYLAILLHYPRLVRAMQGIAMLNGIEAAACIRDLKAGRRWSK*
Ga0137358_111141482	3300012582	Vadose Zone Soil	MTTNNVRSAFLRSYHLPAILLHYPRLVRAMQGIAMLNGMEAAACIRDLKAGRRWSGE
Ga0137407_122469272	3300012930	Vadose Zone Soil	MTTRGARGAFLRSYHIPSILLHYPRLVRSMRRLAILDEMTAATCIRDLKAGRRWSS
Ga0182036_113172382	3300016270	Soil	MTTRSARCAFLRSYQVLSILTHYPRLVRAMRGIALLSGTEAAICI
Ga0182041_100196358	3300016294	Soil	MTTRSARCAFLRSYQVLSILTHYPRLVRAMRGIALLSGTEAAICIRD
Ga0182041_107263832	3300016294	Soil	MTTRTARCAFLRSYQVLSILTHYPRLVRAMRGIALLSGTEAAICIRD
Ga0182035_100487717	3300016341	Soil	MTTRSARCAFLRSYQILSILTHYPRLVRAMRGIALLSGTEAAI
Ga0182035_118479332	3300016341	Soil	MTTRSARCAFLRSYQVLSILTHYPRLVRAMRGIALLSGTE
Ga0182037_117607712	3300016404	Soil	MTTRTARCAFLRSYQVLSILTHYPRLVRAMRGIALLSGTEAAICIRDLKAGRRWSVEAVN
Ga0187804_100811341	3300018006	Freshwater Sediment	MTTNGARSAFLRSYHIPAILLHYPRLVRAMREIATLNSVEAAACIRDFKAGRRWSGQ
Ga0179592_101338002	3300020199	Vadose Zone Soil	MTTNNARSAFLRSYHLPAILLHYPRLVRAMQGIAMLNGMEAAACIRDLKAGRRWSGEAVNRY
Ga0210407_103712163	3300020579	Soil	MTRKGARSAFLRSYHIPSILLHYPRLVRSMRRLAILDEITAATCIRDLKAGRRWSSGPVNRYGG
Ga0210407_107491471	3300020579	Soil	MTTKGARSAFLRSYHIPSILLHYPRLVRSMRRVAILDEMAAATCIRDL
Ga0210407_112653521	3300020579	Soil	MTRKGARNAFLRSYHIPSILLHYPRLVRSMRRVAILDEMAAATCIRDLKARRRWSS
Ga0210399_100697081	3300020581	Soil	MTRKGARNAFLRSYHIPSILLHYPRLVRSMRRLAVLDEMTAATCIRDL
Ga0210401_108192332	3300020583	Soil	MTTKGARSAFLRSYHIPSILLHYPRLVRSMRRVAILDEMAAATCIRDLKARRRWSGDAVDRCGGTH
Ga0210401_109581672	3300020583	Soil	MTTKGARSAFLRSYHIPSILLHYPRLVRSMRRVAILDEMAAATCIRDLKARRG
Ga0210404_107088802	3300021088	Soil	MTTNNARCAFLRSYHVPSILLHYPRLVRAMRGIAGLNGMEAAKCIRDFKAGRRWSSEAVN
Ga0210406_101493211	3300021168	Soil	MTTKGARSAFLRSYHIPSILLHYPRLVRSMRRLATVDEMTAATCIRDLKAGR
Ga0210406_102478003	3300021168	Soil	MTRKGARNAFLRSYHMPSILLHYPRLVRSMRRLAILDEMTAAPCIRD
Ga0210400_1000038248	3300021170	Soil	MTRKGARNAFLRSYHIPSILLHYPRLVRSMRRVAILDEMAAATCIRDLKARRHWSSDAVDRCG
Ga0210400_101794122	3300021170	Soil	MTTKGARSAFLRSYHIPSILLHYPRLLRSMRRVAILDEMAAATCIRDLKARRRWSSDAVDRFG
Ga0210400_107487962	3300021170	Soil	MTTNSARSAFLRSYHLPAILVYYPRLVRAMQGIAMLSGIEAAACIRDFKAGQRW
Ga0210400_116154192	3300021170	Soil	MTRKGARNAFLRSYHIPSILLHYPHLVRSMRRLAILDEMTAATCIRDLKAGRRWSSEAVNRYGGTHKVAT
Ga0210405_103195251	3300021171	Soil	MTTKGARSAFLRSYHIPSILLRYPRLVHSMRRLAVLDEMTAATCIRDLKAGRRWSSEAVNRY
Ga0210405_103340791	3300021171	Soil	MTTKGARSAFLRSYHIPSILLHYPRLVRSMRRVAILDELAAATCIRDLKARRRWSSDAVDRYGGTR
Ga0210388_107849001	3300021181	Soil	MTRKGARNAFLRSYHIPSILLHYPRLVRSMRRVAILDEMAAATCIRDLKARRCWSSD
Ga0210387_106751201	3300021405	Soil	MTTKGARSAFLRSYHIPSILLHYPRLVRSMRRLAILDEMTAAACIRDLTARRRWSS
Ga0210387_112588892	3300021405	Soil	MTTKGARSAFLRSYHIPSILLHYPRLVRSMRRVAILDEMAAATCIRDLKA
Ga0210387_113185831	3300021405	Soil	MTTNNAHCAFLRSYHLPAILLHYPRLVRAMQRIAMLNGTEAAACIRDLKAGRRWSSGPVN
Ga0210383_107844051	3300021407	Soil	MTTRGARSAFLRSYHVPSILLHYPRLVRSMRRLAILDEMTAATCIRDLKAG
Ga0210383_110321812	3300021407	Soil	MTRKGARSAFLRSYHIPSILLHYPRLVRSMRRLAILDEITAATCIRDLKAGR
Ga0210394_113832951	3300021420	Soil	MTTKGARSAFLRSYHIPSILLHYPRLVRSMRRLAILDEMTAATCIRDL
Ga0210391_113096521	3300021433	Soil	MTTKGARSAFLRSYHIPSILLHYPRLVRSMRRVAILDEMAAATCIRDLKARRRWSS
Ga0210410_104585451	3300021479	Soil	MTGNNARSAFLRSYHIPAILLHYPRLVRAMRGIASLNGMEAAACI
Ga0210409_103180301	3300021559	Soil	MTRKGARNAFLRSYHIPSILLHYPRLVRSMMRLAILDEMTAVTCIRDLKAGRR
Ga0210409_107642572	3300021559	Soil	MTTKGARSAFLRSYHIPSILLHYPRLVRSMRRVAILDEMAAATCIRDLKARRRWSSDAVDRYGGTHK
Ga0207684_107432701	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MTTKGARSAFLRSYHIPSILLHYPRLVRSMRRLAILDEMTATTCIRDLKAGR
Ga0207693_101018984	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MTRKGARNAFLRSYHIPSILLHYPRLVRSMRRLAVLDEMTAATCIRDLKAGRRWSSRQSLRRNS
Ga0207665_100741021	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MTRKGARNAFLRSYHIPSILLHYPRLVRSMRRLAVLDEMTAATCIRDLKA
Ga0209240_10049747	3300026304	Grasslands Soil	MTTNNARRAFLRSYYLPAILLHYPRLVRAMQGIAMLNGIEAAACIRDLKAGRRWSSEAVNRYGGTHKGCD
Ga0257179_10369811	3300026371	Soil	MTASNARSAFLRSYHLPAILLHYPRLVRAMQGIAMLNGMEAAACIRDLKAGRRWSSEAVNRYGG
Ga0209730_10321991	3300027034	Forest Soil	MTTNNARVAFLRSYDVPAILLHYPRLVRAMRGIAMLNGIEAAACIRDLKAGRRW
Ga0208092_1118081	3300027074	Forest Soil	MTTNNARSAFLRSYHLPAILLHYPRLVRAMQGIAMLNGMEAAACIRDLKAGRR
Ga0209731_10467431	3300027326	Forest Soil	MTTNNARVAFLRYDVPAILLHYPRLVRAMRGIAMLNGIEAAACIRDLKAGRR
Ga0209523_10132791	3300027548	Forest Soil	MTTNNARVAFLRSYDVPAILLHYPRLVRAMRGIAMLNGIEAAACIRDLKAGRRWSSE
Ga0137415_101208272	3300028536	Vadose Zone Soil	MTTNNARRAFLRSYHLPAILLHYPRLVRAMQGIAMLNGIQAAACIRDLKAGRRWSSEAVNRYGGTHKGCD
Ga0222749_106882371	3300029636	Soil	MTTKGARSAFLRSYHIPSILLHYPRLVRSMRRLAILDEMTAATCIRDLKAGRRW
Ga0318561_106791071	3300031679	Soil	MTTHSARCAFLRSYQILTILTHYPRLVRSMRGIAMLSGSEAAICIRDLKAGRRWSVEAVNQYGGTR
Ga0307469_105343591	3300031720	Hardwood Forest Soil	MATKSARSAFLRCYHIPSILLHYPRLVRSMRRVAILDEMTAATCIRDLKARR
Ga0307469_115813771	3300031720	Hardwood Forest Soil	MTTNNARGAFLRSYHLPAILLHYPRLVRAMQGIAMLNGMEAAACIRDLKA
Ga0307468_1022739972	3300031740	Hardwood Forest Soil	MTRKGARSAFLRCYHIPSILLHYPRLVRSMRRLAILDERTAATCIRDLKAGRRWSSEAVNRYGGTH
Ga0307477_111207761	3300031753	Hardwood Forest Soil	MTTKGVRSAFLRSYHIPSILLHYPRLVRSMRRLAILDEVTAASCIRDLKAGRRWSSEAVNRYGGTHK
Ga0307475_105095121	3300031754	Hardwood Forest Soil	MTTKGARSAFLRSYHIPSILLHYPRLVRSMRRVAILDEMAAATCIRDLKARRRWSSDAVD
Ga0318546_110251062	3300031771	Soil	MTTRTARCAFLRSYQVLSILTHYPRLVRAMRGIALLSGTEAAICIRDLKAG
Ga0318548_105629892	3300031793	Soil	MTTRTARCAFLRSYQVLSILTHYPRLVRAMRGIALLSGTEAAICIRDLKAGRRWSVEA
Ga0318568_108408902	3300031819	Soil	MTTRSARCAFLRSYQVLSILTHYPRLVRAMQGIALLSGTEAAICIRDLKAGRRWSIEAVN
Ga0307473_115592581	3300031820	Hardwood Forest Soil	MTTNNARSAFLRSYHLPAILLHYPRLVRAMQGIAMLNGMEAAACISDLKAGRRWGT
Ga0318567_105778431	3300031821	Soil	MTTRSARCAFLRSYQILSILTHYPRLVRAMRGIALLSGTEAAICIRDLKAGRRWSVE
Ga0318511_104665982	3300031845	Soil	MTTRSARCAFLRSYQVLSILTHYPRLVRAMRGIALLSGTEAAICIRDLKAGRR
Ga0306923_123199452	3300031910	Soil	MTTRTARCAFLRSYQVLSILTHYPRLVRAMRGIALLSGTEAAICIRDLKAGRRWSVEAVNEYG
Ga0310912_100037331	3300031941	Soil	MTTRSARCAFLRSYQVLSILTHYPRLVRAMRGIALLSGTEAAICIRDLKAGRRWS
Ga0310910_113855212	3300031946	Soil	MTTRSARCAFLRSYQVLSILTHYPRLVRAMRGIALLSGTEAAICIRDLKAG
Ga0310909_105105981	3300031947	Soil	MTTRSARCAFLRSYQVLSILTHYPRLVRAMRGIALLSGTEAAICIRDLKAGRRWSVEAVNEYGGTRK
Ga0306926_114740221	3300031954	Soil	MTTNGARCAFLRSYQILSILTHYPRLVRAMQGIALLSGTEAAVCIRDFK
Ga0307479_101898693	3300031962	Hardwood Forest Soil	MTTNNARSAFLRSYHVLAILLHYPRLVRAMRGIAGLNGMEAAKCIRDSKAGRRWS
Ga0318506_105011501	3300032052	Soil	MTTHSARCAFLRSYQILTILTHYPRLVRSMRGIAMLSGSEAAICIRDLK
Ga0307471_1015434191	3300032180	Hardwood Forest Soil	MTTNNARSAFLRSYYLPAILLHYPRLVRAMQGIAMLNGMEAATCIRDLKAGRRWSSEAVNRYGGTHKVA
Ga0307471_1020629662	3300032180	Hardwood Forest Soil	MTTNNARSAFLRSYHVPAILLHYPRLVRAMRGIAGLNGMEAAKCIRDLKAGRRWSSDAVNRY
Ga0307472_1000609421	3300032205	Hardwood Forest Soil	MTRKGARNAFQRSYHIPSILLHYPHLVRSMRRLAILDEMTAATCIRDLKAGRRWSSEAVNRY
Ga0307472_1008391341	3300032205	Hardwood Forest Soil	MTTKGARSAFLRSYHIPSILLHYPRLVRSMRRVAILDEMAAATCIRDLKARRRWSSDAVDRY
Ga0306920_1022884651	3300032261	Soil	MTTNGARCAFLRSYQILSILTHYPRLVRAMQGIALLSGTEAAVCIRDFKAGRRWSVKA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F105631

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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