NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F105635

Metagenome / Metatranscriptome Family F105635

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F105635
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 41 residues
Representative Sequence LKALLADWKLVLAMGGAAIAALAMIAYAFFRPAVDPEEAERK
Number of Associated Samples 90
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 94.95 %
% of genes near scaffold ends (potentially truncated) 98.00 %
% of genes from short scaffolds (< 2000 bps) 89.00 %
Associated GOLD sequencing projects 88
AlphaFold2 3D model prediction Yes
3D model pTM-score0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (93.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(22.000 % of family members)
Environment Ontology (ENVO) Unclassified
(26.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(59.000 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 48.57%    β-sheet: 0.00%    Coil/Unstructured: 51.43%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.50
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF01557FAA_hydrolase 69.00
PF10370DUF2437 25.00
PF00227Proteasome 2.00
PF08665PglZ 1.00
PF13544Obsolete Pfam Family 1.00
PF01039Carboxyl_trans 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG063820S proteasome, alpha and beta subunitsPosttranslational modification, protein turnover, chaperones [O] 2.00
COG3484Predicted proteasome-type proteasePosttranslational modification, protein turnover, chaperones [O] 2.00
COG5405ATP-dependent protease HslVU (ClpYQ), peptidase subunitPosttranslational modification, protein turnover, chaperones [O] 2.00
COG0777Acetyl-CoA carboxylase beta subunitLipid transport and metabolism [I] 1.00
COG0825Acetyl-CoA carboxylase alpha subunitLipid transport and metabolism [I] 1.00
COG4799Acetyl-CoA carboxylase, carboxyltransferase componentLipid transport and metabolism [I] 1.00

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms93.00 %
UnclassifiedrootN/A7.00 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001162|JGI12714J13572_1002957All Organisms → cellular organisms → Bacteria848Open in IMG/M
3300001593|JGI12635J15846_10023772All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia4988Open in IMG/M
3300004080|Ga0062385_10819792All Organisms → cellular organisms → Bacteria611Open in IMG/M
3300004152|Ga0062386_100147490All Organisms → cellular organisms → Bacteria → Acidobacteria1834Open in IMG/M
3300004635|Ga0062388_101599916All Organisms → cellular organisms → Bacteria662Open in IMG/M
3300005166|Ga0066674_10181018All Organisms → cellular organisms → Bacteria1001Open in IMG/M
3300005176|Ga0066679_10992213All Organisms → cellular organisms → Bacteria523Open in IMG/M
3300005178|Ga0066688_10403288All Organisms → cellular organisms → Bacteria886Open in IMG/M
3300005181|Ga0066678_10910390Not Available575Open in IMG/M
3300005518|Ga0070699_101186469All Organisms → cellular organisms → Bacteria700Open in IMG/M
3300005537|Ga0070730_10005854All Organisms → cellular organisms → Bacteria → Acidobacteria10553Open in IMG/M
3300005586|Ga0066691_10405293All Organisms → cellular organisms → Bacteria811Open in IMG/M
3300006041|Ga0075023_100283325All Organisms → cellular organisms → Bacteria676Open in IMG/M
3300006175|Ga0070712_100530906All Organisms → cellular organisms → Bacteria989Open in IMG/M
3300006176|Ga0070765_101161789All Organisms → cellular organisms → Bacteria729Open in IMG/M
3300006794|Ga0066658_10149519All Organisms → cellular organisms → Bacteria1181Open in IMG/M
3300006800|Ga0066660_11413805All Organisms → cellular organisms → Bacteria545Open in IMG/M
3300006914|Ga0075436_100328539All Organisms → cellular organisms → Bacteria1099Open in IMG/M
3300006954|Ga0079219_11606288All Organisms → cellular organisms → Bacteria596Open in IMG/M
3300007258|Ga0099793_10035432All Organisms → cellular organisms → Bacteria → Acidobacteria2145Open in IMG/M
3300007265|Ga0099794_10115613All Organisms → cellular organisms → Bacteria → Acidobacteria1347Open in IMG/M
3300009038|Ga0099829_11176098All Organisms → cellular organisms → Bacteria635Open in IMG/M
3300009089|Ga0099828_10100379All Organisms → cellular organisms → Bacteria → Acidobacteria2501Open in IMG/M
3300009520|Ga0116214_1156459All Organisms → cellular organisms → Bacteria850Open in IMG/M
3300010337|Ga0134062_10275373All Organisms → cellular organisms → Bacteria790Open in IMG/M
3300010360|Ga0126372_11921088All Organisms → cellular organisms → Bacteria637Open in IMG/M
3300011270|Ga0137391_11279568All Organisms → cellular organisms → Bacteria580Open in IMG/M
3300011271|Ga0137393_10693324All Organisms → cellular organisms → Bacteria872Open in IMG/M
3300011271|Ga0137393_11092605All Organisms → cellular organisms → Bacteria678Open in IMG/M
3300011271|Ga0137393_11360845All Organisms → cellular organisms → Bacteria599Open in IMG/M
3300012096|Ga0137389_11060668All Organisms → cellular organisms → Bacteria694Open in IMG/M
3300012096|Ga0137389_11593525All Organisms → cellular organisms → Bacteria549Open in IMG/M
3300012203|Ga0137399_11495732All Organisms → cellular organisms → Bacteria562Open in IMG/M
3300012207|Ga0137381_10072057All Organisms → cellular organisms → Bacteria → Acidobacteria2891Open in IMG/M
3300012361|Ga0137360_11605398All Organisms → cellular organisms → Bacteria555Open in IMG/M
3300012923|Ga0137359_11434655Not Available578Open in IMG/M
3300012929|Ga0137404_10246489All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1532Open in IMG/M
3300012960|Ga0164301_10121308All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1545Open in IMG/M
3300012977|Ga0134087_10342247All Organisms → cellular organisms → Bacteria712Open in IMG/M
3300015241|Ga0137418_10302880All Organisms → cellular organisms → Bacteria1336Open in IMG/M
3300015357|Ga0134072_10258507All Organisms → cellular organisms → Bacteria631Open in IMG/M
3300016422|Ga0182039_10701322All Organisms → cellular organisms → Bacteria892Open in IMG/M
3300017955|Ga0187817_10493181All Organisms → cellular organisms → Bacteria782Open in IMG/M
3300017972|Ga0187781_10191219All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1443Open in IMG/M
3300018032|Ga0187788_10286641All Organisms → cellular organisms → Bacteria663Open in IMG/M
3300018468|Ga0066662_10178861All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1647Open in IMG/M
3300018482|Ga0066669_10207382All Organisms → cellular organisms → Bacteria → Acidobacteria1507Open in IMG/M
3300019788|Ga0182028_1557132All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2109Open in IMG/M
3300019789|Ga0137408_1406186All Organisms → cellular organisms → Bacteria768Open in IMG/M
3300020170|Ga0179594_10085719All Organisms → cellular organisms → Bacteria1116Open in IMG/M
3300020580|Ga0210403_10196328All Organisms → cellular organisms → Bacteria1655Open in IMG/M
3300020580|Ga0210403_10865959All Organisms → cellular organisms → Bacteria714Open in IMG/M
3300020580|Ga0210403_11248357All Organisms → cellular organisms → Bacteria570Open in IMG/M
3300020581|Ga0210399_10451861All Organisms → cellular organisms → Bacteria1070Open in IMG/M
3300021046|Ga0215015_10963516Not Available868Open in IMG/M
3300021406|Ga0210386_11401058All Organisms → cellular organisms → Bacteria586Open in IMG/M
3300021407|Ga0210383_10939583All Organisms → cellular organisms → Bacteria735Open in IMG/M
3300021420|Ga0210394_10800502All Organisms → cellular organisms → Bacteria823Open in IMG/M
3300021420|Ga0210394_11572564All Organisms → cellular organisms → Bacteria554Open in IMG/M
3300021432|Ga0210384_10933430All Organisms → cellular organisms → Bacteria769Open in IMG/M
3300021432|Ga0210384_11017839Not Available730Open in IMG/M
3300021474|Ga0210390_10011376All Organisms → cellular organisms → Bacteria → Acidobacteria7261Open in IMG/M
3300021477|Ga0210398_10611383All Organisms → cellular organisms → Bacteria885Open in IMG/M
3300022533|Ga0242662_10159028All Organisms → cellular organisms → Bacteria688Open in IMG/M
3300022724|Ga0242665_10014481All Organisms → cellular organisms → Bacteria → Acidobacteria1702Open in IMG/M
3300024179|Ga0247695_1024494All Organisms → cellular organisms → Bacteria851Open in IMG/M
3300024246|Ga0247680_1040690All Organisms → cellular organisms → Bacteria673Open in IMG/M
3300024251|Ga0247679_1050532All Organisms → cellular organisms → Bacteria697Open in IMG/M
3300026305|Ga0209688_1089178All Organisms → cellular organisms → Bacteria563Open in IMG/M
3300026312|Ga0209153_1312924Not Available504Open in IMG/M
3300026323|Ga0209472_1216264All Organisms → cellular organisms → Bacteria631Open in IMG/M
3300026331|Ga0209267_1181517All Organisms → cellular organisms → Bacteria831Open in IMG/M
3300026515|Ga0257158_1059522All Organisms → cellular organisms → Bacteria716Open in IMG/M
3300026551|Ga0209648_10098420All Organisms → cellular organisms → Bacteria → Acidobacteria2401Open in IMG/M
3300027381|Ga0208983_1007602All Organisms → cellular organisms → Bacteria → Acidobacteria2019Open in IMG/M
3300027381|Ga0208983_1074854All Organisms → cellular organisms → Bacteria640Open in IMG/M
3300027748|Ga0209689_1212843All Organisms → cellular organisms → Bacteria834Open in IMG/M
3300027783|Ga0209448_10262841All Organisms → cellular organisms → Bacteria568Open in IMG/M
3300027783|Ga0209448_10324023All Organisms → cellular organisms → Bacteria → Proteobacteria503Open in IMG/M
3300027862|Ga0209701_10311763All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales901Open in IMG/M
3300027875|Ga0209283_10109945All Organisms → cellular organisms → Bacteria → Acidobacteria1808Open in IMG/M
3300028808|Ga0302228_10112384All Organisms → cellular organisms → Bacteria1271Open in IMG/M
3300029636|Ga0222749_10528347All Organisms → cellular organisms → Bacteria641Open in IMG/M
3300030503|Ga0311370_11451308All Organisms → cellular organisms → Bacteria721Open in IMG/M
3300030862|Ga0265753_1050830All Organisms → cellular organisms → Bacteria736Open in IMG/M
3300030878|Ga0265770_1124809All Organisms → cellular organisms → Bacteria545Open in IMG/M
3300031231|Ga0170824_117478522All Organisms → cellular organisms → Bacteria657Open in IMG/M
3300031715|Ga0307476_10830620All Organisms → cellular organisms → Bacteria683Open in IMG/M
3300031753|Ga0307477_10930961All Organisms → cellular organisms → Bacteria572Open in IMG/M
3300031823|Ga0307478_11669034Not Available525Open in IMG/M
3300031846|Ga0318512_10314610All Organisms → cellular organisms → Bacteria780Open in IMG/M
3300031947|Ga0310909_10691967All Organisms → cellular organisms → Bacteria847Open in IMG/M
3300032059|Ga0318533_10219973All Organisms → cellular organisms → Bacteria1365Open in IMG/M
3300032174|Ga0307470_11015392All Organisms → cellular organisms → Bacteria661Open in IMG/M
3300032205|Ga0307472_100806197All Organisms → cellular organisms → Bacteria858Open in IMG/M
3300032205|Ga0307472_101477739All Organisms → cellular organisms → Bacteria662Open in IMG/M
3300032782|Ga0335082_11514082All Organisms → cellular organisms → Bacteria542Open in IMG/M
3300032783|Ga0335079_12103074All Organisms → cellular organisms → Bacteria541Open in IMG/M
3300032955|Ga0335076_10104968All Organisms → cellular organisms → Bacteria → Acidobacteria2753Open in IMG/M


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil22.00%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil20.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil13.00%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil6.00%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil5.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil4.00%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil4.00%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil3.00%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil3.00%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil3.00%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland2.00%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere2.00%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa2.00%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment1.00%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds1.00%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil1.00%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil1.00%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil1.00%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil1.00%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil1.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil1.00%
FenEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Fen1.00%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil1.00%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere1.00%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001162Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2EnvironmentalOpen in IMG/M
3300001593Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2EnvironmentalOpen in IMG/M
3300004080Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3EnvironmentalOpen in IMG/M
3300004152Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3EnvironmentalOpen in IMG/M
3300004635Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3EnvironmentalOpen in IMG/M
3300005166Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123EnvironmentalOpen in IMG/M
3300005176Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128EnvironmentalOpen in IMG/M
3300005178Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137EnvironmentalOpen in IMG/M
3300005181Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127EnvironmentalOpen in IMG/M
3300005518Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaGEnvironmentalOpen in IMG/M
3300005537Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1EnvironmentalOpen in IMG/M
3300005574Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143EnvironmentalOpen in IMG/M
3300005586Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140EnvironmentalOpen in IMG/M
3300006041Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014EnvironmentalOpen in IMG/M
3300006175Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaGEnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300006794Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107EnvironmentalOpen in IMG/M
3300006800Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109EnvironmentalOpen in IMG/M
3300006914Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5Host-AssociatedOpen in IMG/M
3300006954Agricultural soil microbial communities from Georgia to study Nitrogen management - GA ControlEnvironmentalOpen in IMG/M
3300007258Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3EnvironmentalOpen in IMG/M
3300007265Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300009520Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaGEnvironmentalOpen in IMG/M
3300010337Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300011271Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaGEnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012207Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012923Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaGEnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012960Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MGEnvironmentalOpen in IMG/M
3300012977Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300015241Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015357Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaGEnvironmentalOpen in IMG/M
3300016422Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111EnvironmentalOpen in IMG/M
3300017955Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2EnvironmentalOpen in IMG/M
3300017972Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300018032Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP10_20_MGEnvironmentalOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300018482Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118EnvironmentalOpen in IMG/M
3300019788Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (PacBio error correction)EnvironmentalOpen in IMG/M
3300019789Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300020170Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300020580Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-MEnvironmentalOpen in IMG/M
3300020581Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-MEnvironmentalOpen in IMG/M
3300021046Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depthEnvironmentalOpen in IMG/M
3300021406Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-OEnvironmentalOpen in IMG/M
3300021407Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-OEnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300021432Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-MEnvironmentalOpen in IMG/M
3300021474Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-OEnvironmentalOpen in IMG/M
3300021477Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-OEnvironmentalOpen in IMG/M
3300022533Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022724Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300024179Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK36EnvironmentalOpen in IMG/M
3300024246Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK21EnvironmentalOpen in IMG/M
3300024251Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK20EnvironmentalOpen in IMG/M
3300026305Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142 (SPAdes)EnvironmentalOpen in IMG/M
3300026312Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)EnvironmentalOpen in IMG/M
3300026323Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)EnvironmentalOpen in IMG/M
3300026331Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)EnvironmentalOpen in IMG/M
3300026515Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-AEnvironmentalOpen in IMG/M
3300026551Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)EnvironmentalOpen in IMG/M
3300027381Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027748Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)EnvironmentalOpen in IMG/M
3300027783Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)EnvironmentalOpen in IMG/M
3300027862Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027875Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300028808Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_2EnvironmentalOpen in IMG/M
3300029636Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030503III_Palsa_E3 coassemblyEnvironmentalOpen in IMG/M
3300030862Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE5 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030878Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031715Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05EnvironmentalOpen in IMG/M
3300031753Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515EnvironmentalOpen in IMG/M
3300031823Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05EnvironmentalOpen in IMG/M
3300031846Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19EnvironmentalOpen in IMG/M
3300031947Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000HEnvironmentalOpen in IMG/M
3300032059Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27EnvironmentalOpen in IMG/M
3300032174Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300032782Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1EnvironmentalOpen in IMG/M
3300032783Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3EnvironmentalOpen in IMG/M
3300032955Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12714J13572_100295713300001162Forest SoilLKALLADWELLLAMGGALIAALAMIAYAFLRPAPNPEEEERK
JGI12635J15846_1002377213300001593Forest SoilLNTLLADWRLVLGMGGALIAALAMIVYAFLRPAVNPE
Ga0062385_1081979223300004080Bog Forest SoilLKALFADWKLVLAMAGAAIAAIMMIAYAFFHPAEEPEDVERRRR
Ga0062386_10014749013300004152Bog Forest SoilLKALFADWKLVLAMAGAGLAAVAMIVYAFFRPAEDTEAAE
Ga0062388_10159991613300004635Bog Forest SoilLSALLADWKLTLSMAAAALAAVAMVAYAFFRPAVDMVGAERK
Ga0066674_1018101823300005166SoilLKELLVDWKLMLAMGGAAIAALAMITYAFFRPAEDPEEAERKRRL
Ga0066679_1099221323300005176SoilLKELLVDWKLMLAMGGAAIAALAMIAYAFFRPAEDPEEAERKRRLHLNQIG
Ga0066688_1040328823300005178SoilLNALLADWKLVLAMGGALIAALAMIAYAFLRPEANPEEEERKRRLHLNQ
Ga0066678_1091039023300005181SoilLKALLADWKLVLAMGGAAIAALAMIAYAFFRPAVDPEEAERK
Ga0070699_10118646923300005518Corn, Switchgrass And Miscanthus RhizosphereLKSLFADWKLVLAMGAAAIAAIAMIAYAFFRPAEEPEDVERRRRLHL
Ga0070730_1000585413300005537Surface SoilLLIALPADWKLMLAMGGAAVAAVAMIVYAFLRPEGDPEAEERKRRLHL
Ga0066694_1019513023300005574SoilLKILASDWKLILMMGIAAIAAISMIAYAFFRPTEHPEDAERKRR
Ga0066691_1040529323300005586SoilLKELFADWKLVLAMGGAAIAAMAMIAYAFFRPAVN
Ga0075023_10028332513300006041WatershedsLKALFADWKLVLAMVGALIAGVGMIVYAFLRPAVNPEAE
Ga0070712_10053090623300006175Corn, Switchgrass And Miscanthus RhizosphereLKDLLADWKMLLTIGGGSLAALAMIAYAFVRPAVNP
Ga0070765_10116178923300006176SoilLKTLLAEWKIVLAMCGAAVAALAMIAYAFFRPAEPAENVERKRRLHLNQ
Ga0066658_1014951933300006794SoilLKELLADWKLLLVMGGAAIAALAMIAYAFFRPAVDPE
Ga0066660_1141380523300006800SoilLKALLADWKLVLAMGGALIAALVMIAYAFLRPTADPEEEE
Ga0075436_10032853923300006914Populus RhizosphereLTIALPADWKLLLAMGGAAIAAVAMIVYAFLRPEGDPEAEERKRR
Ga0079219_1160628823300006954Agricultural SoilLKALLADWKLVLVMGGAAIAAVAMIVYAFLRPAEDPEAEERKRRLHLNQ
Ga0099793_1003543243300007258Vadose Zone SoilLKALLADWKLVLAMGGAAIAALAMIVYAFFRPPVNPEEEER
Ga0099794_1011561333300007265Vadose Zone SoilLKALLADWKVVLAMGGAAAAALALIVYAFLRPAVNPEEEE
Ga0099829_1117609813300009038Vadose Zone SoilLKALLADWKLVLAMGGAAIAAVAMIAYAFLRPAVDPEEEERKRRLHLN
Ga0099828_1010037913300009089Vadose Zone SoilLKELLADWKLVLGMGGAAIAALAMIAYAFFRPAVNPEEEERKRRLHLNQ
Ga0116214_115645913300009520Peatlands SoilLKELFADWKMMLGMGGALIAAVAMIAYAFFRPALNPEEEERKRRLHL
Ga0134062_1027537323300010337Grasslands SoilLKALLADWKLVLAMGGALIAALAMIAYAFLRPAADPEEEE
Ga0126372_1192108823300010360Tropical Forest SoilLPADWKLVLAMGGAAIAAVAMIVYAFLRPEGDPEAEERKRRLH
Ga0137391_1127956813300011270Vadose Zone SoilLKALLADWKVVLAMGAAAIAAVAMIVYAFLRPAVNPEEEERKRRLHLNQ
Ga0137393_1069332423300011271Vadose Zone SoilLKELLADWKLVLALGGAAVAALAMIVYAFFRPAVDPEEAE
Ga0137393_1109260523300011271Vadose Zone SoilMFADWKVVLAVGGAVIAALAMIVYAFFGPAVDPEE
Ga0137393_1136084523300011271Vadose Zone SoilLKALLADWKLVLAMGGALIAALAMIAYAFLRPAVNPEEE
Ga0137389_1106066823300012096Vadose Zone SoilLKELLADWKLVLALGGAAVAALAMIVYAFFRPAVDPE
Ga0137389_1159352513300012096Vadose Zone SoilLKALLADWKLVLAMGGAAIAAVAMIAYAFLRPAVDPEEEE
Ga0137399_1149573213300012203Vadose Zone SoilLKELLADWKLVLMIGGGSLAALALIAYAFARPAAD
Ga0137381_1007205753300012207Vadose Zone SoilLKELLADWKVVLAMGGAAIAAFAMIAYAFFRPAEDP
Ga0137360_1160539813300012361Vadose Zone SoilLKELLADWKFVLAMGGAAIAAIAMIAYAFFRPALNPEEEER
Ga0137359_1143465513300012923Vadose Zone SoilLKALLADWKLVLTMGGAAIAGLAMIAYAFFRPAVNPEDAERK
Ga0137404_1024648933300012929Vadose Zone SoilLKALFADWKLVLAMGGAAIAALAMIAYAFFRPAVDPEE
Ga0164301_1012130833300012960SoilLKSLFADWKLVLAMAGAAIAAIAMIAYAFFRPAEEPEDLER
Ga0134087_1034224723300012977Grasslands SoilLKELLVDWKLMLAMGGAAIAALAMIAYAFFRPAED
Ga0137418_1030288033300015241Vadose Zone SoilLKELLADWKLLLMIGGGSLAALALIAYAFARPAADPEAEER
Ga0134072_1025850713300015357Grasslands SoilMLADWKLVLVMGGAAIAAVAMIVYAFLRPEGDPEDQERRRRL
Ga0182039_1070132223300016422SoilMLGDFKFVLAIGGAAIAAVAMIVYAFLRPEGDPEDQE
Ga0187817_1049318123300017955Freshwater SedimentLKNLLADWKLVLAMGGAAIAAIAMIAYAFFRPAED
Ga0187781_1019121913300017972Tropical PeatlandLKELLADWKLLLALVGGSVAAMALIVYAFVRPAVDPAAEERKRRL
Ga0187788_1028664113300018032Tropical PeatlandVEKFLADWKMALAMGGAAVAAIAMIAYAFFRPAEDPEAVERKRRL
Ga0066662_1017886113300018468Grasslands SoilLKELLADWKLVLALAGAAVAALAMIVYAFLRPTVDPEEPER
Ga0066669_1020738213300018482Grasslands SoilLKDWLADWKLMLARGGAAIDALAMVAYAFLRPAVNPEE
Ga0182028_155713253300019788FenMLLALAGGCAAAIALIVYAFVRPAVDPEAEERKRRLH
Ga0137408_140618623300019789Vadose Zone SoilLKELFADWKLVLGMGGALVAALAMIGYAFFRPAVNPEDEERKRRLH
Ga0179594_1008571913300020170Vadose Zone SoilLLKDLLADWKLMLVMGGAAIAAFAMIAYAFFRPGV
Ga0210403_1019632813300020580SoilLKELLADWKLLLMIGGGSLAALALIAYAFARPAADPAAEERKR
Ga0210403_1086595913300020580SoilLKDLLADWKLLLAMGGAAIAGLALVAYAFFRPAANPEE
Ga0210403_1124835723300020580SoilLKALLADWKLVLAMVAAALGGVAMIVYAFLRPAVNPEAEERKRRLHLNQIG
Ga0210399_1045186113300020581SoilLQALLADWKLILTMGCAAIAALAMIAYAFFRPAVDPYEA
Ga0215015_1096351613300021046SoilLNSFLADWKLTLALVCAAIAAIAMIAYAFIRPAVDPEEDERKRRLH
Ga0210386_1140105813300021406SoilLKALFADWKVVLAMAGAAIAAIMMIAYAFFHPAEEPEDVERRRRLHLN
Ga0210383_1093958323300021407SoilLRELLADWKLLLMIGGGSLAALALIAYAFARPAADPEAEE
Ga0210394_1080050223300021420SoilLQALLADWKLLLTMGGAAIAALAMIAYAFFRPAVNP
Ga0210394_1157256423300021420SoilLKALLADWKVVLVMVGVGVAAVAMIVYAFFRPAEDPEAA
Ga0210384_1093343023300021432SoilLKALLADWKLALAMAGAAVAAVAMIAYAFFRPAEDQEG
Ga0210384_1101783923300021432SoilLKALFTDWKLVLAMGGAALAAILMIAYAFFRPAEEP
Ga0210390_1001137613300021474SoilLKGLFADWKLVLAMGGAALAAILMIAYAFFRPAEEPEDVER
Ga0210398_1061138313300021477SoilLKALFADWKVVLAMAGAAIAAILMIAYAFFHPAEEPEDVER
Ga0242662_1015902813300022533SoilLKALLADWKVVLVMVGVGVAAVAMIVYAFFRPAEDPEAAERKRRLHLNQ
Ga0242665_1001448113300022724SoilLKALLADWKLVLAMGGAAVAALAMIAYAFLRPAEDPEATERRR
Ga0247695_102449413300024179SoilLKELLADWKLLLMIGGGSLAALALIAYAFARPAAD
Ga0247680_104069013300024246SoilLKSLFADWKLVLAMAGAAIAAIAMIAYAFFRPAEEPEDVER
Ga0247679_105053223300024251SoilLKSLFADWKLVLAMAGAAIVAIAMIAYAFFRPAEEPQDVERRR
Ga0209688_108917813300026305SoilMLADWKLVLVMGGAAIAAVAMIVYAFLRPEGDPEDQERRRRLHLN
Ga0209153_131292413300026312SoilLIVLLDDWKLWLAMGGAAVAAVAMIVYAFLRPEGDPEAEERKRR
Ga0209472_121626423300026323SoilLKAWLADWKLMLAMGGAAIAALAMVAYAFLRPAVNPE
Ga0209267_118151723300026331SoilLLNALLADWKLVLAMGGALIAALAMIAYAFLRPEANPEEEERKRRLHLNQ
Ga0257158_105952213300026515SoilLKELFADWKLVLGMGGALVAAVAMIAYAFFRPAVNPEDEERKRRLHLNQ
Ga0209648_1009842043300026551Grasslands SoilLKEIFADWKFVLAMGGAAIAAIAMIAYAFFRPALNPEEEERRRRLHLN
Ga0208983_100760243300027381Forest SoilLKELFADWKLVLGMGGALVAAVAMIAYAFFRPAVNPEDEERKRR
Ga0208983_107485423300027381Forest SoilLKELLADWKLVLMIGGGSLAALALIAYAFARPAADPE
Ga0209689_121284323300027748SoilLKAWLGDWKLMLAMGGAAIAALAMVAYAFLRPAVNPEE
Ga0209448_1026284113300027783Bog Forest SoilLKALFADWKVVLAMAGAAIAAILMIAYAFFRPAEEAEDVERR
Ga0209448_1032402323300027783Bog Forest SoilLNALLADWKLTLSVVGAAAAAVAMVAYAFFRPAVDM
Ga0209701_1031176323300027862Vadose Zone SoilLKALFADWKLELAMGGAALAAIAMVVYAFLRPSVDPETEERKRRL
Ga0209283_1010994513300027875Vadose Zone SoilLKELLADWKLVLGMGGAAIAALAMIAYAFFRPAVNPEEEERKRRL
Ga0302228_1011238433300028808PalsaLNALLADWKLTLATCAGVVAAIAMVAYAFLRPAVDMVEAERKRRLHL
Ga0222749_1052834723300029636SoilLKALLADWELLLAMGGALIAALAMIAYAFLRPAPNPEEEERKRR
Ga0311370_1145130813300030503PalsaLNALLADWKLTLATCAGVVAAIAMVAYAFLRPAVDMVEAERKR
Ga0265753_105083023300030862SoilLKALFADWKVVLAMAGAAIAAIMMIAYAFFRPAEEAED
Ga0265770_112480913300030878SoilLKALFADWKVVLAMAGAAIAAILMIAYAFFRPAEEPED
Ga0170824_11747852223300031231Forest SoilLKDLLADWKMLLAIGGGSLAALAMIAYAFVRPAVNPEEEERKR
Ga0307476_1083062023300031715Hardwood Forest SoilLKELLADWKLLLMIGGGSLAALALIAYAFARPAADPEA
Ga0307477_1093096123300031753Hardwood Forest SoilLKDLLADWKLMLVMGGAAIAAVAMIAYAFFRPPVDPEEEE
Ga0307478_1166903413300031823Hardwood Forest SoilLKALFADWKVLLAMVGAGVAAVAMIVYAFFRPTEDPE
Ga0318512_1031461013300031846SoilMLADWKLVLVMGGAAVAAVAMIVYAFLRPEGDPEDEERK
Ga0310909_1069196713300031947SoilMLADWKLVLVMGGAAVAAVAMIVYAFLRPEGDPEDEERKRRLHLNQ
Ga0318533_1021997313300032059SoilLKDLLADWKMLLTIGGGSLAALAMIAYAFVRPAVNPEEEE
Ga0307470_1101539213300032174Hardwood Forest SoilLKELLADWKVLLMIGGGSLAALALIAYAFAQPAADP
Ga0307472_10080619713300032205Hardwood Forest SoilLLIALPADWKLLLAMGGAAIAAVAMIVYAFLRPEGDPEAEERK
Ga0307472_10147773913300032205Hardwood Forest SoilLKDLLADWKMLLAIGGGSLAALAMMAYAFVRPAVNP
Ga0335082_1151408213300032782SoilLKELLADWKLVLAFAGGSVAVILLLVYAFLRPTENPEETERKRRLH
Ga0335079_1210307413300032783SoilLKELLADWKMLLAIGGGSLAALAMIAYAFVRPAVNPEEEE
Ga0335076_1010496843300032955SoilMLADWKLVLAMVGAAIVAIAMIAYAFIRPEETPEEAERKRRLHL

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.