Metagenome Family F105658

Basic Information
Family ID	F105658
Family Type	Metagenome
Number of Sequences	100
Average Sequence Length	58 residues
Representative Sequence	MMANEQTSVSRVADREKLPLLLDKARQFAGQYIDSLEERPVFPGEKSLRAMHAL
Number of Associated Samples	87
Number of Associated Scaffolds	100

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	3.00 %
% of genes from short scaffolds (< 2000 bps)	3.00 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.42

Most Common Taxonomy
Group	Unclassified (97.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (12.000 % of family members)
Environment Ontology (ENVO)	Unclassified (30.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.000 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 36.59% β-sheet: 0.00% Coil/Unstructured: 63.41%
Feature Viewer

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Pfam ID	Name	% Frequency in 100 Family Scaffolds
PF04226	Transgly_assoc	9.00
PF02517	Rce1-like	3.00
PF07045	DUF1330	2.00
PF00589	Phage_integrase	2.00
PF05960	DUF885	2.00
PF00072	Response_reg	1.00
PF03551	PadR	1.00
PF00282	Pyridoxal_deC	1.00
PF07007	LprI	1.00
PF13643	DUF4145	1.00
PF12706	Lactamase_B_2	1.00
PF01850	PIN	1.00
PF00144	Beta-lactamase	1.00
PF02803	Thiolase_C	1.00
PF01293	PEPCK_ATP	1.00
PF14534	DUF4440	1.00
PF13520	AA_permease_2	1.00
PF12674	Zn_ribbon_2	1.00
PF08241	Methyltransf_11	1.00
PF07883	Cupin_2	1.00
PF12697	Abhydrolase_6	1.00
PF07927	HicA_toxin	1.00

COG ID	Name	Functional Category	% Frequency in 100 Family Scaffolds
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	9.00
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	3.00
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	3.00
COG4805	Uncharacterized conserved protein, DUF885 family	Function unknown [S]	2.00
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	2.00
COG0076	Glutamate or tyrosine decarboxylase or a related PLP-dependent protein	Amino acid transport and metabolism [E]	1.00
COG0183	Acetyl-CoA acetyltransferase	Lipid transport and metabolism [I]	1.00
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	1.00
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	1.00
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	1.00
COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	General function prediction only [R]	1.00
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	1.00
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	1.00
COG1866	Phosphoenolpyruvate carboxykinase, ATP-dependent	Energy production and conversion [C]	1.00
COG2367	Beta-lactamase class A	Defense mechanisms [V]	1.00
COG3755	Uncharacterized conserved protein YecT, DUF1311 family	Function unknown [S]	1.00

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.00 %
All Organisms	root	All Organisms	3.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.00 %
cellular organisms	root	All Organisms → cellular organisms	3.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.00 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	3.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.00 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	1.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.00 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.00 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	1.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.00 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1.00 %

Scaffold	Taxonomy	Length	IMG/M Link
3300005447\|Ga0066689_10150738	All Organisms → cellular organisms → Bacteria	1383	Open in IMG/M
3300012211\|Ga0137377_10540729	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1103	Open in IMG/M
3300026277\|Ga0209350_1054733	All Organisms → cellular organisms → Bacteria	1151	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	84.00%
Host-Associated	Host-Associated	16.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	81.00%
Plants	Host-Associated → Plants	16.00%
Aquatic	Environmental → Aquatic	3.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	81.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere	12.00%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.00%
Sediment	Environmental → Aquatic → Sediment	3.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	70.00%
Loam	Environmental → Terrestrial → Soil → Loam	11.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.00%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.00%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.00%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	43.00%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	21.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.00%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.00%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.00%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.00%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.00%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.00%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.00%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.00%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	11.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	10.00%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.00%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	9.00%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	7.00%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.00%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	4.00%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	4.00%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.00%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.00%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.00%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.00%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.00%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.00%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.00%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.00%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.00%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.00%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	1.00%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.00%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.00%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.00%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908045	Soil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011	Environmental	Open in IMG/M
2170459005	Grass soil microbial communities from Rothamsted Park, UK - July 2009 direct MP BIO1O1 lysis 0-21cm	Environmental	Open in IMG/M
2170459006	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect in plug lysis (for fosmid construction) 0-10cm	Environmental	Open in IMG/M
2170459007	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect in plug lysis (for fosmid construction) 10-21cm	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300003203	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG	Environmental	Open in IMG/M
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010364	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09212015	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012882	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019878	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2m2	Environmental	Open in IMG/M
3300019882	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a2	Environmental	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300020006	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m2	Environmental	Open in IMG/M
3300020022	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s2	Environmental	Open in IMG/M
3300020059	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1a2	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300026277	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026316	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 (SPAdes)	Environmental	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental	Open in IMG/M
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
KansclcFeb2_03975200	2124908045	Soil	MRKEQSSMSRVADREQLSLLLDKARQFAAEYIDSLDERAVFPGDKSLRAMQALLEPLPENTSDPFVV
E41_08171610	2170459005	Grass Soil	MMANEQKASLSRVADREKLPLLLDKARQFAGQYIDSLEERPVFPGEKSTASNACPG
L01_07606420	2170459006	Grass Soil	MMANEQTSVGRVADREKLPLLLDKARQFAGQYIDSLEERPVFPANNRYER
L02_02336620	2170459007	Grass Soil	MMANEQTSVSRVADREMLPLLLDKARQFAGQYIDSLEERPVFPSEKSLRAMRALVEPLPENSERPILGSRSAPGESARLLS
L02_08199700	2170459007	Grass Soil	MMANEQTSVSRVADREMLPLLLDKARQFAGQYIDSLEERPVFPRENTLRAMRALRRTAPENYDATHFLVLDQLQEDRRACCR
JGI1027J12803_1018835712	3300000955	Soil	MANEPDVVSRVADFEELPLLLDKARRFAGQYIESLEERPVFPDEKSLLAMHALVEPLPENPSDPFLVLD
JGI25406J46586_101406981	3300003203	Tabebuia Heterophylla Rhizosphere	MTANEHASVSRVADREKLLLLLDKARQFAGEYVDSLEERPVFPGEKSLQAMDALVEPLPENPSDPFLVLDQLQEIG
Ga0062595_1004034582	3300004479	Soil	MPDKHQTSNAKPKTSASRVADREKFSVLLDKARQFAGEYIDSLEERPVFPGKESLRALDELVEPLPENPSDPFLVL
Ga0066683_103296651	3300005172	Soil	MTANEQTSVSRVADREKLPLLLDKARQFAGEYIDSLEERPVFPGEKSLRAM
Ga0066388_1005790901	3300005332	Tropical Forest Soil	MSRVADLETLPLLLDKARQFAGQYINSLEERSVFPGEKALRAMGALVEPLP
Ga0066388_1013789793	3300005332	Tropical Forest Soil	MRKEQSSASPVADPESLSLLLDKARQFAGEYIGSLEERPVFP
Ga0066388_1085176672	3300005332	Tropical Forest Soil	MTANKHTPVSRVSDREKLSLLLDKARQFAGEYIDSLEERPVFPGEKSLR
Ga0070660_1011733921	3300005339	Corn Rhizosphere	MMADEHTSVRPVADHEKLLSLLDKARQFAGEYIDSLEKRPVFPGEKSLRAMQALVEPLPENPTDPFVVLDQ
Ga0070675_1013521162	3300005354	Miscanthus Rhizosphere	MMADKHTSVRPVADHENLLSLLDKARQFAGEYIDSLEKRPVFPGEKSLRAMQALVEPLPE
Ga0070659_1016748321	3300005366	Corn Rhizosphere	MTNEQTSLSRVADREELPLLLDKARQFARQYIESLEERPVFPSEKSLRAMDALVEPLPE
Ga0070714_1007501173	3300005435	Agricultural Soil	MSQSGTRSEFQTSVSRVADHEKLSLLLDKARRFAGEYIDSLDERPVFPGEKSLRTMEALVEPL
Ga0066689_101507381	3300005447	Soil	MTANEQTSVSRVADREKLPLLLDKARQFAGEYIDSLEERPVFPGEKSLRAMD
Ga0070707_1005326751	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	LSRVADREKLSLLLDKARQFAGEYIDSLEERPVFPIELIQKGGK*
Ga0066700_101219571	3300005559	Soil	MSQSGTRSEFQTSVSRVADREKLPLLLDKARQFAGHYIDSLEERPVFPGEKSLQAMHALVEPLPENPSDPFLVLDQLQEIGA
Ga0066706_103369774	3300005598	Soil	MTANEQTSFSRVADREKLPLLLDKARQFAGHYIDSLEE
Ga0066903_1006983013	3300005764	Tropical Forest Soil	MIANQTSVSRVADREMLSLLLDKARKFAGEYIDSLEERPVFPGEKSLRAM
Ga0066903_1012178963	3300005764	Tropical Forest Soil	MSEESSVSRVADREQLLSLLDKARQFAGEYIDSLEERP
Ga0068860_1019384351	3300005843	Switchgrass Rhizosphere	MTNKQTSLSRVADREELPLLLDKARQFARQYIESLEERPVFPSEKSLR
Ga0066651_106879322	3300006031	Soil	MSQSGTRSEFQTSVSRVADREKLPLLLDKARQFAGHYIDSLEERPVFPGEKSLQAMHALVEPLP
Ga0070712_1000215155	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MANEQTSVSRVADREKLPLLLDKARQFAGQYIDSLEERPVFP
Ga0070712_1000391396	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	VHESKLTRSEFQTSVSRVAGREKLLLDKARQFAGDYIDSLEERPVFPGEQSLRAMNALIEPLPENPSDPFLV
Ga0099791_105014731	3300007255	Vadose Zone Soil	MMANEQTSVSRVADREKLPLLLDKARQFAGQYIDSLEERPVFPSEKSL*
Ga0066710_1020776872	3300009012	Grasslands Soil	RVADLEKLSLLLDKARQFAGEYIDSLEERPVFPGEKSLRAMAGATVPS
Ga0066710_1028987521	3300009012	Grasslands Soil	MANEQTSVSRAADREKLPLLLDKARQFAGQYIDSLEERPVFPGEKSLR
Ga0111539_111587523	3300009094	Populus Rhizosphere	MMANEHTSIGRVVDPEKLLLLLDKAREFAGDYIESLEERPVFPGEQSLRAMDALVEPLPENPSDPFQVLDHLQEIGAPAV
Ga0111539_119513781	3300009094	Populus Rhizosphere	MPDKHQTSPVKPQTSLNRVADREILPLLLDKARQFAGQYISSLEERPVFPGEKSLQAMDALVESLPENSG
Ga0066709_1012755161	3300009137	Grasslands Soil	MPDKHQTSNIKPQTSVSGVGDREKLSLLLDKARQFAGAYVDSLEERPVFPGEKSLRAMDA
Ga0066709_1028625231	3300009137	Grasslands Soil	MTANEQTSVSRVADREKLPLLLDKARQFAGEYIDS
Ga0075423_116493201	3300009162	Populus Rhizosphere	MANEQSSVSRVADPKQLPSLLDKARQFAGHYIDSLNERPVFPGEKSLRAMD
Ga0105241_105103013	3300009174	Corn Rhizosphere	MMADKHTSVRPVADHENLLSLLDKARQFAGEYIDSLEKRPVFPVEKSLRAMQALVEPLPENPADPFVVLDQLQKIGAPAV
Ga0126315_110623711	3300010038	Serpentine Soil	MIPGDDRVADRETLPLLLDKARQFAGQYIDSLGERPVFPTEKSLQAMDALVEPLPENPSDPFLVLDQLQEIGAP
Ga0126373_110894432	3300010048	Tropical Forest Soil	MVADEQSSVSRFADREKLPLLLDKARQFAGQYIDSLEERPVFPGEKSLRAMDTLVEPLPENPSDPFLVLDQLQEIGARAVVNQTGG
Ga0134086_102529101	3300010323	Grasslands Soil	MSRVADREKLPLLLDKARQFAGQYIESLEERPVFPSEKSLRAIHVLLEPLPVKLVPVDD*
Ga0134064_103431521	3300010325	Grasslands Soil	VSRVADREKLPLLLDKARQFAGHYIDSLEERPVFPGEKSLQAMHALVEPLPENPSDPFLVLDQLQEI
Ga0134065_100463401	3300010326	Grasslands Soil	MTANEQTSVSRVADREKLPLLLDKARQFAGEYIDSLEERPVFPGEKSLRAMHALVESLPENPSDPFLILDQLQEIGAPASSLKQAVDTSVS*
Ga0134111_104733041	3300010329	Grasslands Soil	MSRVADREKLPLLLDKARQFAGQYIDSLLKDLRFFPAKKSLRAMHALLEPLPVKLVPVDD
Ga0126378_124169622	3300010361	Tropical Forest Soil	MSEESSVSRVADREKLSLLLDKARQFAGEYIDSLEERP
Ga0134066_102279451	3300010364	Grasslands Soil	MTANEQTSFSRVADREKLPLLLDKARQFAGHYIDSLEERRVFPGEKSLRAMHALV
Ga0126381_1018072281	3300010376	Tropical Forest Soil	MMAKEETSGSRVADREKLSLLLDKARQFAGEYIDSLEERPVFP
Ga0126381_1040436582	3300010376	Tropical Forest Soil	MTATEHTSVPRVADCEQLSLLLDKARQFAGEYIDSLEERPVFPGEKSLRAMDALVEPLPE
Ga0137388_100285167	3300012189	Vadose Zone Soil	MANEHTFVSRVADREKLPLLLDKARQFAGHYIDSLEERPVF
Ga0137364_100686533	3300012198	Vadose Zone Soil	MTANEQTSVSRVADREKLSLLLDKARQFAGEYIDSLEERMVF
Ga0137383_100464961	3300012199	Vadose Zone Soil	VSRVADREKLPLLLDKARQFAGHYIDSLEERPVFPGEKSLQAMHALVEPLPENP
Ga0137381_104322831	3300012207	Vadose Zone Soil	MMANEQTSVSRVADREKLPLLLDKARQFAGQYIDSLEERPVFPGEKSLRAMHAL
Ga0137377_105407292	3300012211	Vadose Zone Soil	MTANEQTSVSRVADREKLPLLLDKARQFAGEYIDSLEERPVFPGEKSLRAMDDLVELLPENPSDPFLILDQLQEIG
Ga0137366_109211112	3300012354	Vadose Zone Soil	MTANEQVSVSRVADREKLPLLLDKARQFAGRYIDSLEERPVFPGEKSLRAMDDLVEPLPENPSDPFLVLDQLQEIGGILL*
Ga0137384_109423911	3300012357	Vadose Zone Soil	MMANEQTSVSRVADREKLPLLLDKARQFAGQYIDSLDERPVFPGEKALRAMDALVEPFPENPSDPSLVLDQ
Ga0157304_10420791	3300012882	Soil	MPDQHQTSNFEPQTSAPRVADREKLPLLLDKARQFAGQYISSLEDRPVFPDEKSLQAMDALIEPLPENPS
Ga0137396_100782853	3300012918	Vadose Zone Soil	MTANEHSSVRRVADHEKLPLLLDKARQFAGEYIDSLEERPVFPGEKSLRAMDAE*
Ga0137404_110395631	3300012929	Vadose Zone Soil	MMANEQTSISRVADREKLPLLLDKARQFAGEYIDSLEERPVFPSEKSLRAMHALIEPLPENPTD
Ga0137404_120568291	3300012929	Vadose Zone Soil	MTANEQTSVSRVADREKLPLLLDKARQFAGEYIDSLEERPVFPGEKSLRAMHALVESLPENPSDPFLI
Ga0126375_108349562	3300012948	Tropical Forest Soil	MRKEQSSASPVADPEQLALLLDKARQFVGQYIDSLEERPVFPSEKSVRAMDALLEPLPES
Ga0126375_118126482	3300012948	Tropical Forest Soil	MSEESSVSRVADRETLPLLLDKARQFAGQYIDSLEERQVFPDEKALRAMDALVEPLPENPSDPFVVLDQL
Ga0126369_110893071	3300012971	Tropical Forest Soil	VSRVADREQLPLLLDKARQFAGQYIDSLEERPVFPGEKS
Ga0126369_112967333	3300012971	Tropical Forest Soil	MIANQQGSVSRVADREKLLLLLDKARQFAGEYIDSLEARPAFPGEKSLRAMDALVEPLPENPSDPLLVLD
Ga0134076_101767762	3300012976	Grasslands Soil	MANEQTSVSRAADREKLPLLLDKARQFAGQYIDSLEERPVFPSEKSLRAMHALVEPLPRKSERPIP
Ga0134087_107754171	3300012977	Grasslands Soil	MTANQQTPVSRVADREKLPLLLDKARQFAQQYIDSLEERPVFPTETSLQAMQGL
Ga0157374_113136552	3300013296	Miscanthus Rhizosphere	VADRETLPLLLDKARQFAGQYISSLEDRPVFPDEKSLQAMD
Ga0157378_123952161	3300013297	Miscanthus Rhizosphere	MTNEQTSLSRVADREELPLLLDKARQFARQYIESLEERPVFPSEKSLRAMDALVEPLPENPSDPF
Ga0157377_108783601	3300014745	Miscanthus Rhizosphere	MMADEHTSVRPVADHEKLLLLLDKARQFAGEYIDSLEKRPVFPGEKSLRAMQALVEPLPENPSDPFAVLDQLQK
Ga0157376_102518743	3300014969	Miscanthus Rhizosphere	MPDKHQTSPVKPQTSLNRVADREMLPLLLDKARQFAGHYIDSLQERTVFPGEKSLQAMDTLVEPLPENSG
Ga0173483_105855742	3300015077	Soil	MMANEQTSVSRVADREKLPLLLDKARQFAGQYIDSLEERPVFPGEK
Ga0134089_101416981	3300015358	Grasslands Soil	MANEQTSVSRAADREKLPLLLDKARQFAGQYIDSLEERPVFPGEKSLRAMHALVEPLPENPSDPFLVLDQLQ
Ga0132257_1007079003	3300015373	Arabidopsis Rhizosphere	MMADKHTSVRPVADHEKLLSLLDKARQFAGEYLDSLEKRPVFPGEKSL
Ga0132255_1004123003	3300015374	Arabidopsis Rhizosphere	MMADEHTSVRPVADHEKLLSLLDKARQFAGEYIDSLEKRPVFPGEKSLRAMQALVEP
Ga0182036_116113322	3300016270	Soil	VSRVADREKLSLLLDKARQFAGEYIETLEERPVFPGEKSLRAMDALVEPLPENPSDP
Ga0182036_118879681	3300016270	Soil	MSVSRVADCEKLSLLLDKARQFAGEYIDSLEERPVFPDEKS
Ga0134083_101465532	3300017659	Grasslands Soil	VSRAADREKLPLLLDKARQFAGQYIDSLEERPVFPGEKSLRAMHALVEPLPE
Ga0184617_10845742	3300018066	Groundwater Sediment	MTANEYTSASRVADREKLSLLLDKARQFAGEYIDSLEERPVFPCGKSLRAMDAE
Ga0184624_100487432	3300018073	Groundwater Sediment	VRRVADREKLSLLLDKARQFAGEYIDTLEERPVFPGEKSRRAMDAE
Ga0184625_102771512	3300018081	Groundwater Sediment	MIANEQTSLSRVADREKLPLLLDKARQFAGEYIDSLEKRPVFPGE
Ga0066655_113795931	3300018431	Grasslands Soil	MANEQSAVSRVADREELPLLLDRARQFAGQYIDSLEERPVFPSEKSLRAMHALLEPSS
Ga0066669_101177045	3300018482	Grasslands Soil	MANEQTSVSRVADREKLPLLLDKARQFAGQYIDSLEERPVCPSEKSLRAMHALV
Ga0193715_11156081	3300019878	Soil	MTNEQTSVSRVADREKLPLLLDKARQFAGQYIDSLEERPIFPGEKSLRAMHA
Ga0193713_10199231	3300019882	Soil	MANEQTSLSRVADREKLPLLLDKARQFAGQYIDSL
Ga0193728_13715001	3300019890	Soil	MANEQTSLSRVADREKLPLLLDKARQFAGQYIDSLEERPVFPGEESLRAMDALVQPLPEN
Ga0193735_11339762	3300020006	Soil	MANEQTSLSRVADREKLPLLLDKARQFAGQYIDSLEERPVFPGEES
Ga0193733_11761991	3300020022	Soil	MANEQTSLSRVADHEKLPLLLDKARQFAGQYIDSLEERPVFPG
Ga0193745_10245552	3300020059	Soil	MTANEQSSVSRVADREKLSLLLDKARRFAGAYIDTLEERPVFPGEKSLRAMDAE
Ga0182009_104327852	3300021445	Soil	MIMRDERVADRETLPLLLDKARQFAGQYIDSLEERPVFPGEKSLQAMDALVEPLPQN
Ga0126371_112207601	3300021560	Tropical Forest Soil	MFDDMTTNESTCVSRVADHEMLSLLLDKARQFAGEYIDSLEERP
Ga0207690_115514072	3300025932	Corn Rhizosphere	MANEQTSLSRVADREKLPLLLDKARQFARQYIDSLEERPVFPGKESLRAMDALVQPLPENPSDPFLVLDQLQEIGAPGVVT
Ga0207661_115066292	3300025944	Corn Rhizosphere	MMADEHTSVRPVADNEKLLLLLDKARQFAGEYIDSLEKRPVFPGEKSLRAMQALVEPL
Ga0209350_10547333	3300026277	Grasslands Soil	MTANEQTSVSRVADREKLPLLLDKARQFAGEYIDSLEERPVFPGEKSLRAMHAL
Ga0209155_12576001	3300026316	Soil	MTANEQTSVSRVADREKLPLLLDKARQFAGEYIDSLEERPVFPGEKSLRAMHALVESLPENPSDPFLIL
Ga0209470_11388401	3300026324	Soil	MANEQTSVSRAADREKLPLLLDKARQFAGQYIDSLEERPVFPGEKSLRAMHALVEPLPE
Ga0209802_11017131	3300026328	Soil	MSQSGTRSEFQTSVSRVADREKLPLLLDKARQFAGHYIDSLEERPVFPGEKSLQAMHALV
Ga0209161_103188261	3300026548	Soil	MTANEQTSFSRVADREKLPLLLDKARQFAGHYIDSLEERRVFPGEKSLQAMHA
Ga0307296_101748071	3300028819	Soil	MIANEQTSLSRVADREKLPLLLDKARQFAGEYIDSLEKRPV
Ga0307312_107062211	3300028828	Soil	MANEQTSLSRVADREKLPLLLDKARQFAGQYIDSLEERPVFPGEKSLRAMDALVQPLP
Ga0310886_107504481	3300031562	Soil	MMADKHTSVRPVADHEKLLSLLDKARQFAGEYIDSLEKRPVFPGEKSLRAMQALVEPLPENPSDP
Ga0310813_101705923	3300031716	Soil	MMANEQTSVSRVADRERLPLLLDKARQFAGQYIDSLEERPVFPSEKSLRAMHALVEPLPENPSDPFLVLDQLQ
Ga0307472_1019045491	3300032205	Hardwood Forest Soil	MMANKQTPMSRVADREKLPLLLDKARQFAGEYIDSLGERPVFPSEKSLRAMDALVEPLPENPSDPFMV
Ga0306920_1031272931	3300032261	Soil	VSRVADREKLSLLLDKARQFAGEYIETLEERPVFPGEKSLRAM
Ga0310810_103417881	3300033412	Soil	MANEQTSVSRVADRERLPLLLDKARQFAGQYIDSLEERPVFPSEKSLRAMHALVEPLP

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.42
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.42
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F105658

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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