Metagenome / Metatranscriptome Family F105662

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F105662
Family Type	Metagenome / Metatranscriptome
Number of Sequences	100
Average Sequence Length	94 residues
Representative Sequence	MQVQAPKGQYRVIGLDHVDTLESPSGPLSKDFESFDEARDLADRMTEEYLWTYVYDDAGELLYEASSYREQAQQVEMLSQEPPEDSKGDPRRTPR
Number of Associated Samples	68
Number of Associated Scaffolds	100

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	84.00 %
% of genes near scaffold ends (potentially truncated)	22.00 %
% of genes from short scaffolds (< 2000 bps)	83.00 %
Associated GOLD sequencing projects	59
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.60

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (95.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (68.000 % of family members)
Environment Ontology (ENVO)	Unclassified (64.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (68.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 18.70% β-sheet: 17.89% Coil/Unstructured: 63.41%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.60
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.60
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 100 Family Scaffolds
PF00436	SSB	9.00
PF01656	CbiA	1.00
PF12770	CHAT	1.00
PF02586	SRAP	1.00
PF08308	PEGA	1.00
PF02195	ParBc	1.00
PF09509	Hypoth_Ymh	1.00
PF00515	TPR_1	1.00
PF01872	RibD_C	1.00
PF01738	DLH	1.00
PF13711	DUF4160	1.00

COG ID	Name	Functional Category	% Frequency in 100 Family Scaffolds
COG0629	Single-stranded DNA-binding protein	Replication, recombination and repair [L]	9.00
COG2965	Primosomal replication protein N	Replication, recombination and repair [L]	9.00
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	1.00
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	1.00
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	1.00

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	95.00 %
Unclassified	root	N/A	5.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	95.00 %
Unclassified	root	N/A	5.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	95.00 %
Unclassified	root	N/A	5.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	73.00 %
Unclassified	root	N/A	5.00 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.00 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	1.00 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.00 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	70.00 %
Unclassified	root	N/A	5.00 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2.00 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	1.00 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.00 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1.00 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	70.00 %
Unclassified	root	N/A	5.00 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	2.00 %
Phycisphaerae	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae	1.00 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.00 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1.00 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	70.00 %
Unclassified	root	N/A	5.00 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.00 %
unclassified Phycisphaerae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae	1.00 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	1.00 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1.00 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	70.00 %
Unclassified	root	N/A	5.00 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.00 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	1.00 %
Peptostreptococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptostreptococcaceae	1.00 %
Phycisphaerae bacterium RAS2	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium RAS2	1.00 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	70.00 %
Unclassified	root	N/A	5.00 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.00 %
unclassified Peptostreptococcaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptostreptococcaceae → unclassified Peptostreptococcaceae	1.00 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	1.00 %
Phycisphaerae bacterium RAS2	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium RAS2	1.00 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	70.00 %
Unclassified	root	N/A	5.00 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.00 %
Peptostreptococcaceae bacterium oral taxon 113	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptostreptococcaceae → unclassified Peptostreptococcaceae → Peptostreptococcaceae bacterium oral taxon 113	1.00 %
Nocardia transvalensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia transvalensis	1.00 %
Phycisphaerae bacterium RAS2	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium RAS2	1.00 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002906\|JGI25614J43888_10139120	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	642	Open in IMG/M
3300002910\|JGI25615J43890_1062252	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	631	Open in IMG/M
3300002914\|JGI25617J43924_10067322	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1308	Open in IMG/M
3300005187\|Ga0066675_10205328	All Organisms → cellular organisms → Bacteria	1387	Open in IMG/M
3300005557\|Ga0066704_10676562	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	653	Open in IMG/M
3300005559\|Ga0066700_10997107	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	551	Open in IMG/M
3300005575\|Ga0066702_10270070	All Organisms → cellular organisms → Bacteria	1037	Open in IMG/M
3300005586\|Ga0066691_10153009	Not Available	1328	Open in IMG/M
3300005921\|Ga0070766_10006031	All Organisms → cellular organisms → Bacteria	6132	Open in IMG/M
3300006162\|Ga0075030_101395301	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia transvalensis	549	Open in IMG/M
3300006174\|Ga0075014_101025183	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptostreptococcaceae → unclassified Peptostreptococcaceae → Peptostreptococcaceae bacterium oral taxon 113	501	Open in IMG/M
3300006797\|Ga0066659_11111478	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	661	Open in IMG/M
3300007258\|Ga0099793_10125813	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1202	Open in IMG/M
3300007258\|Ga0099793_10465326	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	626	Open in IMG/M
3300007258\|Ga0099793_10520639	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	592	Open in IMG/M
3300007265\|Ga0099794_10692977	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	542	Open in IMG/M
3300009012\|Ga0066710_102038815	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	848	Open in IMG/M
3300009088\|Ga0099830_10005753	All Organisms → cellular organisms → Bacteria	7164	Open in IMG/M
3300009090\|Ga0099827_10030394	All Organisms → cellular organisms → Bacteria	3891	Open in IMG/M
3300009143\|Ga0099792_10385354	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	854	Open in IMG/M
3300011269\|Ga0137392_10113454	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2152	Open in IMG/M
3300011270\|Ga0137391_10047734	All Organisms → cellular organisms → Bacteria	3647	Open in IMG/M
3300011270\|Ga0137391_10183257	Not Available	1824	Open in IMG/M
3300011271\|Ga0137393_10248733	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1508	Open in IMG/M
3300012198\|Ga0137364_10359056	All Organisms → cellular organisms → Bacteria	1087	Open in IMG/M
3300012198\|Ga0137364_11240027	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	557	Open in IMG/M
3300012199\|Ga0137383_10243985	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1317	Open in IMG/M
3300012199\|Ga0137383_10445130	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	949	Open in IMG/M
3300012200\|Ga0137382_10293294	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1133	Open in IMG/M
3300012200\|Ga0137382_10315666	All Organisms → cellular organisms → Bacteria	1092	Open in IMG/M
3300012200\|Ga0137382_10779597	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	687	Open in IMG/M
3300012202\|Ga0137363_11103279	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	675	Open in IMG/M
3300012203\|Ga0137399_10011348	All Organisms → cellular organisms → Bacteria	5386	Open in IMG/M
3300012203\|Ga0137399_11369428	Not Available	593	Open in IMG/M
3300012203\|Ga0137399_11441905	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	575	Open in IMG/M
3300012205\|Ga0137362_10822568	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	795	Open in IMG/M
3300012205\|Ga0137362_11426086	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	579	Open in IMG/M
3300012205\|Ga0137362_11796140	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	500	Open in IMG/M
3300012206\|Ga0137380_11097244	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	678	Open in IMG/M
3300012207\|Ga0137381_11207293	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	649	Open in IMG/M
3300012208\|Ga0137376_10027442	All Organisms → cellular organisms → Bacteria	4479	Open in IMG/M
3300012208\|Ga0137376_10388988	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1211	Open in IMG/M
3300012208\|Ga0137376_10820841	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	800	Open in IMG/M
3300012208\|Ga0137376_11434949	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	581	Open in IMG/M
3300012210\|Ga0137378_10998249	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	751	Open in IMG/M
3300012211\|Ga0137377_10500797	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1153	Open in IMG/M
3300012211\|Ga0137377_10814531	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	866	Open in IMG/M
3300012211\|Ga0137377_10908047	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	812	Open in IMG/M
3300012285\|Ga0137370_10392102	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	840	Open in IMG/M
3300012285\|Ga0137370_10454537	All Organisms → cellular organisms → Bacteria → Acidobacteria	780	Open in IMG/M
3300012349\|Ga0137387_10481274	Not Available	901	Open in IMG/M
3300012361\|Ga0137360_10453786	All Organisms → cellular organisms → Bacteria	1086	Open in IMG/M
3300012361\|Ga0137360_11558688	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	565	Open in IMG/M
3300012363\|Ga0137390_10309557	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1562	Open in IMG/M
3300012363\|Ga0137390_10472410	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1229	Open in IMG/M
3300012363\|Ga0137390_11500189	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	615	Open in IMG/M
3300012363\|Ga0137390_12006882	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	504	Open in IMG/M
3300012582\|Ga0137358_10642173	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	711	Open in IMG/M
3300012683\|Ga0137398_10097658	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1842	Open in IMG/M
3300012683\|Ga0137398_10247210	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1187	Open in IMG/M
3300012683\|Ga0137398_10597642	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	763	Open in IMG/M
3300012917\|Ga0137395_10464841	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	909	Open in IMG/M
3300012918\|Ga0137396_10513325	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	888	Open in IMG/M
3300012918\|Ga0137396_10515116	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	886	Open in IMG/M
3300012918\|Ga0137396_10981744	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	613	Open in IMG/M
3300012922\|Ga0137394_10025123	All Organisms → cellular organisms → Bacteria → Proteobacteria	4804	Open in IMG/M
3300012922\|Ga0137394_11091710	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	661	Open in IMG/M
3300012925\|Ga0137419_11552483	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	562	Open in IMG/M
3300012927\|Ga0137416_10301333	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium RAS2	1328	Open in IMG/M
3300012930\|Ga0137407_11694793	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	602	Open in IMG/M
3300012944\|Ga0137410_10101156	Not Available	2137	Open in IMG/M
3300012944\|Ga0137410_10387241	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1124	Open in IMG/M
3300012944\|Ga0137410_11259492	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	638	Open in IMG/M
3300015053\|Ga0137405_1144516	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	688	Open in IMG/M
3300015241\|Ga0137418_10284095	All Organisms → cellular organisms → Bacteria	1390	Open in IMG/M
3300015245\|Ga0137409_10377962	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1230	Open in IMG/M
3300015356\|Ga0134073_10059017	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1048	Open in IMG/M
3300020199\|Ga0179592_10162790	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1018	Open in IMG/M
3300020579\|Ga0210407_10977012	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	647	Open in IMG/M
3300021086\|Ga0179596_10393833	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	698	Open in IMG/M
3300021168\|Ga0210406_10310172	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1281	Open in IMG/M
3300021559\|Ga0210409_10005254	All Organisms → cellular organisms → Bacteria	13644	Open in IMG/M
3300021559\|Ga0210409_10005937	All Organisms → cellular organisms → Bacteria	12753	Open in IMG/M
3300026319\|Ga0209647_1049861	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2261	Open in IMG/M
3300026356\|Ga0257150_1072299	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	522	Open in IMG/M
3300026497\|Ga0257164_1064351	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	604	Open in IMG/M
3300026551\|Ga0209648_10105290	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2304	Open in IMG/M
3300026551\|Ga0209648_10475097	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	751	Open in IMG/M
3300026551\|Ga0209648_10484169	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	733	Open in IMG/M
3300027266\|Ga0209215_1053228	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	562	Open in IMG/M
3300027862\|Ga0209701_10061062	All Organisms → cellular organisms → Bacteria	2401	Open in IMG/M
3300027882\|Ga0209590_10039751	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2554	Open in IMG/M
3300027889\|Ga0209380_10066583	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2053	Open in IMG/M
3300027911\|Ga0209698_11192957	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	561	Open in IMG/M
3300028536\|Ga0137415_10264759	All Organisms → cellular organisms → Bacteria	1526	Open in IMG/M
3300030991\|Ga0073994_10004318	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1121	Open in IMG/M
3300030991\|Ga0073994_12335216	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	637	Open in IMG/M
3300031670\|Ga0307374_10260333	All Organisms → cellular organisms → Bacteria	1147	Open in IMG/M
3300031962\|Ga0307479_11458828	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	642	Open in IMG/M
3300032180\|Ga0307471_100005772	All Organisms → cellular organisms → Bacteria	7782	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	97.00%
Aquatic	Environmental → Aquatic	3.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	97.00%
Sediment	Environmental → Aquatic → Sediment	3.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	93.00%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.00%
Loam	Environmental → Terrestrial → Soil → Loam	3.00%
Clay	Environmental → Terrestrial → Soil → Clay	1.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	69.00%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	14.00%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	10.00%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.00%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.00%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	1.00%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	68.00%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	8.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.00%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.00%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.00%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.00%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.00%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.00%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	1.00%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002906	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm	Environmental	Open in IMG/M
3300002910	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015053	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300026356	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-A	Environmental	Open in IMG/M
3300026497	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-B	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027266	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300030991	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031670	Soil microbial communities from Risofladan, Vaasa, Finland - OX-3	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25614J43888_101391201	3300002906	Grasslands Soil	MQVQAPKGQYRVIGLDHIDTLDSPSGPLSKDFESFDAAKDLADRMTEEYLWTYVYDDAGELLYEASSYREQAQQVEMLSQEPHDXSKGDPRRKPQ*
JGI25615J43890_10622521	3300002910	Grasslands Soil	MQVQAPKGQYRVIGLDHIDTLDSPSGPLSKDFESFDAAKDLADRMTEEYLWTYVYDDAGELLYEASSYREQAQQVEMLSQEPHDSSKGDPRRKPQ*
JGI25617J43924_100673222	3300002914	Grasslands Soil	MQVQAPKGQYRVIGLDHIDTLDSPSGPLSKDFESFDAAKDLADRMTEEYLWTYVYDDAGELLYEASSYREQAQQVEMLSQEPHDSSKGDLRRKPQ*
Ga0066675_102053283	3300005187	Soil	DTLESPSGPLSKDFESFEEARYLADRMTEEYIWTYVYDDAGELLYEASSYREQAQQAEMLSQEPPEGSKGEPRRKPQ*
Ga0066704_106765622	3300005557	Soil	GGIMQVQAPKGQYRVIGLDHVNTLDSPTGPLSKDFESFDEARDLADRMTEEYLWTYVYDDAGKVLYEASSYREQAQQAEMLSQEPPDGSKGDPRRTPR*
Ga0066700_109971072	3300005559	Soil	MQVQAPKGQYRVIALDHIDTLESPSGPLSKDFESFEEARDLADRMTEEYLWTYVYDDAGELLHEASSCREQAQQAGM
Ga0066702_102700702	3300005575	Soil	MQTQAPKGQYRVIGMDRIDTLSSPEGPLSKDCDTFDEAKDLADRSGDSYLWTYVYDDSGELLYEAGLYREHAESLKQEPPAGSKT*
Ga0066691_101530092	3300005586	Soil	MQVQAPKGQYRVIGLDHVNTLDSPTGPLSKDFESFDEARDLADRMSEEYVWIYVYDDAGEVLYEASSYREQAQQVEMLSQEPPEDSKGDPRRTPR*
Ga0070766_100060315	3300005921	Soil	MQVHAPKGQYRVIGLDHINTLDSPSGPLSKDLESFDEARDLADRLTEEYLWTYVYDDAGKLLFEANSYREQARQVEMLSQEPPEGSKGDPRRTPP*
Ga0075030_1013953011	3300006162	Watersheds	MQVQAPKGQYRVIGMDRIDTLSSPEGPLSKDCDTFDEAKDLADRSGESYLWTYVYDDSGELLYEAGSYREHAESLKREPPAGSKT*
Ga0075014_1010251831	3300006174	Watersheds	MRPVPACSGGKQSSRVGAVRDVSIPLLRLHLWIQVRYEDKGRLGGIMQVQAPKGQYRLIGLDHIDTLDSPSGPFSKDFESLDEARDLADRMTEEYLWTYVYDDAGKVLYEASSYREQAQQAEMLGQEPPEGSKGVPRRTPR*
Ga0066659_111114781	3300006797	Soil	MQVQAPKGQYRVIGLDHVDTLESPSGPLSKDFESFDEARDLADRMTEEYLWTYVYDDAGELLYEASSYREQAQQVEMLSQEPPEDSKGDPRRTPR*
Ga0099793_101258131	3300007258	Vadose Zone Soil	MQVRAPKGQYRVIGLDHIDTLDSPSGPLSKDFESFDAAKDLADRMTEEYLWTYVYDDAGELLYEASSYREQAQQVEMLSQEPHDSSEGDPRRKPQ*
Ga0099793_104653261	3300007258	Vadose Zone Soil	MQVHAPKGQYRVIGLDHIDTLDSPSGPLCKDFENFEEARDLADRMTEEYLWTYVYDDAGELLYEASSYREQAQQVEMLSQEPPEGSKGDPRRTPR*
Ga0099793_105206392	3300007258	Vadose Zone Soil	MQVQAPKGQYRVIGLDHVNTLDSPSGPLRKDFESFDEARDLADRMSEEYHWIYVYDDAGEVLYEAGSYREQVEQLKMITKEPAQDSKGEPRRKPR*
Ga0099794_106929772	3300007265	Vadose Zone Soil	RPRHARLLAQFRDQEGCGTKTKGRLGGIMQVQAPKGQYRVIALDHIDTLDSPSGPHCKDFESFDEARDSADRMTAEYLWTYVYDDAGELLYEASSYREQAQQVEMLSQEPPEGSKGDPRRTPR*
Ga0066710_1020388151	3300009012	Grasslands Soil	MQLQAPKGQYRVIGLDHVNTLDSPTGPLSKDFESFDEARDLADRMSEEYVWIYVYDDAGEVLYEAGSYREQVEQVKMLSQEPPEGSKGEPRRKPQ
Ga0099830_1000575312	3300009088	Vadose Zone Soil	MQVHAPKEQYRVIGLDHIDTLDSPSGPLCKDFENFEEARDLADRMTDEYLWTYVYDDAGKLLYEASSYREQAQQVEMLRQEPPEGSKGDPRRTPR*
Ga0099827_100303945	3300009090	Vadose Zone Soil	MQVQAPKGQYRVIGLDHIDTLDSPSGLLSKDFETFDAAKDLADRMTAEYLWTYVYDDAGELLYEASSYREQAQQVEMLSQEPHDSSKGDLPRKPQ*
Ga0099792_103853541	3300009143	Vadose Zone Soil	MQVQAPKGQYRVIGLDHIDTLDSPSGPLSKDFESFDAAKDLADRMTEEYLWTYVYDDAGELLYEASSYREQAQQVEMLSQESHNSSKGDPRRKPQ*
Ga0137392_101134542	3300011269	Vadose Zone Soil	MQVHAPKGQYRVIGLDHIDTLDSPSGPFSKDFESLDEARDLADRMTEEYLWTYVYDDAGKVLYEASSYREQAQQAEMLSQEPPEGSKGDPRRTPR*
Ga0137391_100477345	3300011270	Vadose Zone Soil	MQVRAPKGQYRVIGLDHIDTLDSPSGPLSKDFESFDAAKDLADRMTEEYLWTYVYDDAGELLYEASSYREQAQQVEMLSQESHNSSKGDPRRKPQ*
Ga0137391_101832572	3300011270	Vadose Zone Soil	MQVQAPKGQYRVIALDHIDTLESPSGPLSKDFESFEEARDLADRMTEEHIWTYVYDDAGELLYEASSYREQAQQAEMLSQEPPEGSKGEPRRKPQ*
Ga0137393_102487331	3300011271	Vadose Zone Soil	MQVQAPKGQYRVIGLDHIDTLDSPSGPLSKDFESFDAAKDLADRMTEEYLWTYVYDDAGELLYEASSYQEQAQQVEMLSQEPHDSSKGDPRRKPQ*
Ga0137364_103590562	3300012198	Vadose Zone Soil	MQVQAPKGQYRVIGLDHIDTLDSPSGPLSKDLESFDAAKDLADRMTEEYLWTYVYDDAGELLYEASSYREQAQEVEMLSQEPREGSKGDPRRKPR*
Ga0137364_112400272	3300012198	Vadose Zone Soil	MQVQAPKGQYRVIGLDHIDTLESPSGPLSKDFETFEEARDLADRMTQEFLWTYVYDDAGELLHEASSYREQAQQAEMLSQEPPEGSKGDPRRTPR*
Ga0137383_102439852	3300012199	Vadose Zone Soil	MQVQAPKGQYRVIGMDHVNTLDSPSGPLSKDFETLEEARDLADRMTQEFLWTYVYDDAGEVLYEAGSYREQVEQVKILSQEPPEDSKGEPRRKPR*
Ga0137383_104451303	3300012199	Vadose Zone Soil	MQVHAPKGQYRVIGLDHIDNLESPSGPLSKDFESFDEARDLADRMSEEYVWIYVYDDAGELLYEASSYREQAQRAEMLSQEPPEGSKGGPRRTPR*
Ga0137382_102932942	3300012200	Vadose Zone Soil	MQVQAQAPKGQYRVIGLDHVNTLDSPSGSLRKDFESFEEARDLADRMSEEYVWIYVYDDAGEVLYEAGSYREQVEQVKMLDQEPPEDSEGEPRRKPR*
Ga0137382_103156662	3300012200	Vadose Zone Soil	MQVQAPKGQYRVIGLDHVNTLESPSGPLSKDFESFDEARDLADRMTKEYLWTYVYDDAGEVLYEASSYREQAQQVEMLSQEPPEDSKGDPRRTPR*
Ga0137382_107795972	3300012200	Vadose Zone Soil	MQVQAPKGQYRVIGLDHVDTLESPSGPLSKDFESFDEARDLADRMTEEYLWTYVYDDAGELLYEASSYREQAQQVEMLSQEPPEDSKGDPR
Ga0137363_111032792	3300012202	Vadose Zone Soil	MQVQAPRGQYRVIGLDHIDTLESPTGPFSKDLESFDQAKDLADLMTEEYLWTYVYDDAGDLFYGAGAYREQAQQVEMLNQETPEGS
Ga0137399_100113483	3300012203	Vadose Zone Soil	MQVQAPKGQYRVIGLDHIDTLDSPSGPLRKDFESFDEARDLADRMTEEYLWTYVYDDAGELLYQASSYREQAQQSEMFSQESPEGSKGDPRRTPR*
Ga0137399_113694281	3300012203	Vadose Zone Soil	MRVHAPKGQYRVIGLDHIDTLESPSGPLSKDFESFDEARDLADRMTEEYLWTYVYNDAGELLYEASSYREQAQQVE
Ga0137399_114419051	3300012203	Vadose Zone Soil	MQVQAPKGQYRVIGLDHIDTLESPSGPLSKDFETFDEARDLADRITEEYLWTYVYDDAGELLYEASSYREQAQQVEMLSQEPPGDSKGDPRRTPR*
Ga0137362_108225682	3300012205	Vadose Zone Soil	MRVHAPKGQYRVIGLDHIDTLESPSGPLSKDFESFDEARDSADRMTEEYLWTYVYDDAGKLLYEASSYGEQAQQVEILSKEPPEGSKGDPRRTPR*
Ga0137362_114260862	3300012205	Vadose Zone Soil	MQVQAPKGQYRVIGLDHVDTLESPSGPLSKDFESFDEARDLADRMTEEYLWTYVYDDAGELLYEASSYREQVEQVKMLS*
Ga0137362_117961401	3300012205	Vadose Zone Soil	MQVQAPKGQYRVIGLDHIDTLDSPCGPLSKDFESFDAAKDLADRMTEEYLWTYVYDDAGELLYEASSYREQAQQVE
Ga0137380_110972441	3300012206	Vadose Zone Soil	LHLWIQVRYEDKGRLGGIMQVHAPKGQYRVIGVDHIDTLESPRGPLSKDFESLDEARDLADRMTEEYLWTYVYDDAGKVLYEASSYPEQAQQAEMLSQEPPEGSKGDPRRTPR*
Ga0137381_112072931	3300012207	Vadose Zone Soil	MQVQAPKGQYRVIGLDHVNTLDSPTGPLSKDFGSFDEARDLADRMSEEYVWIYVYDDAGEVLYEAGSYRERVEQVKILSQEPAEDSRGEPRRKPR*
Ga0137376_100274425	3300012208	Vadose Zone Soil	MRVHAPKGQYRVIGLDHIDTLESPSGPLGKDFESFDEARDSADRMTAEYLWTYVYDDAGELLYEASSYREQAQQVEMLSQEPPEGSKGDPRRTPR*
Ga0137376_103889882	3300012208	Vadose Zone Soil	MQVQAPKGQYRVIGLDHVNTLDSPSGPLSKDFESFDEARDLADRMTEEYLWTYVYDDAGELLYEASSYREQAQEVEMLSQEPREGSKGDPRRKPR*
Ga0137376_108208411	3300012208	Vadose Zone Soil	MQVQAPKGQYRVIGLDHVNTLESPSGPLSKDFESFDEARDLADRMSEEYVWIYVYDDAGEVLYEAGSYREQVEQVKILSPEPPEDSKGEPRRKPR*
Ga0137376_114349491	3300012208	Vadose Zone Soil	QAPKGQYRVIGLDHVNTLDSPSGPLCKDFESFGEARDLADRMSEEYLRLYVYDDVGEVLYESGSYREQVEQVKILSQEPPEDSKGEPRRKPR*
Ga0137378_109982491	3300012210	Vadose Zone Soil	MQVHAPKGQYRVIGLDHIDNLESPSGPLSKDFESFDEARDLADRMSEEYAWIYVYDDAGEVLYEAGSYREQVEQVEILSQEPPEDSKGEPRRKAR*
Ga0137377_105007972	3300012211	Vadose Zone Soil	MQVQAPKGQYRVIGLDHIDTLESPSGPLSKDFETFEEARDLADRMTQEFLWTYVYDDAGELLHEASSYREQAQQAEMLSQEPPEGSKGDPRRKPR*
Ga0137377_108145312	3300012211	Vadose Zone Soil	MQVQAPKGQYRVIGLDHVNTLDSPSGPLRKDVESFDEARDLADRMSEEYVWIYVYDDAGELLYEASSYREQAQQVEMLSQEPPEDSKGDPRRTPR*
Ga0137377_109080471	3300012211	Vadose Zone Soil	MQVQAPKGQYRVIGLDHIDTLDSPSGPLSKDFESFDAAKDLADRMTEEYLWTYVYDDAGELLYEASSYREQAQQVEMLSQEPHDSSKGDSRRKPQ*
Ga0137370_103921021	3300012285	Vadose Zone Soil	MQVQAPKGQYRVIGLDHVNTLDSPSGPLSKDFESFDEARDLADRMSEEYVWIYVYDDAGEVLYEAGSYKEQVEQVKILSQEPPEDSKGEPRRKPR*
Ga0137370_104545371	3300012285	Vadose Zone Soil	VIGLDHIETLESPSGPLSKDFATFEEARDLADRMTQEFLWTYVYDDAGELLYEASSYREQAQEVEMFSQEPREGSKGDPRRKPR*
Ga0137387_104812742	3300012349	Vadose Zone Soil	MQVQAPKGQYRVIGLDHDNTLDSPSGPLRKDFESFDEARDLADRMSEEYVWIYVYDDAGEVLYEAGSYREQVEQVKMLSQEPPEGSKGDPRRTPR
Ga0137360_104537862	3300012361	Vadose Zone Soil	MQVQAPKGQYRVIGLDHVNTLDSPSGPLRQDFDSFEEARDLADRISEEYVWIYVYDDAGEVLYEAGSYREQVEQVKILSQEPPEDSKGEPRRKPR*
Ga0137360_115586881	3300012361	Vadose Zone Soil	LTMQVQAPKGQYRVIGLDHIDTLDSPSGPLSKDFESFEAAKDLADRMTEEYLWTYVYDDAGELLYEASSYREQAQQVEMLSQEPHDGSKGDPRRKSQ*
Ga0137390_103095572	3300012363	Vadose Zone Soil	MQVHAPKGQYRVIGLDHIDTLDSPSGPLSKDFESLDEARDLADRMTEEYLWTYVYDDAGKVLYEASSYREQAQQAEMLSQEPPEGSKGDPRRTPR*
Ga0137390_104724102	3300012363	Vadose Zone Soil	APKGQYRVIGLDHIDTLDSPSGPLSKDFESFDAAKDLADRMTEEYLWTYVYDDAGELLYEASSYREQAQQVEMLSQEPHDSSKGDPRRKPQ*
Ga0137390_115001892	3300012363	Vadose Zone Soil	GGIMQVQAPKGQYRVIALDHIDTLESPSGPLSKDFESFEEARDLADRMTEEHIWTYVYDDAGELLYEASSYREQAQQAEMLSQEPPEGSKGEPRRKPQ*
Ga0137390_120068821	3300012363	Vadose Zone Soil	MQDHAPKGQYRVIALDHIDTLDSPSGPLCKDFENFEEARDLAHRMTEEYLWTYVYDDAGELLYEASSYREQAQQVEMLSQEPPEGSKGDPRRTPR*
Ga0137358_106421731	3300012582	Vadose Zone Soil	MQVQAPKGQYRVIGLDHVNTLDSRTGPLSKDFESFDEARDLADRMSEEYVWIYVYDDAGEVLYEAGSYREQVDRLKC*
Ga0137398_100976582	3300012683	Vadose Zone Soil	MQVQAPKGQYRVIGLDHIDTLDSPSGPLSKDFESFDAAKDLADRMTAEYLWTYVYDDAGELLYEASSYREQAQQVEMLSQEPHDSSKGDPRRKPQ*
Ga0137398_102472101	3300012683	Vadose Zone Soil	MQVQAPKGQYRVIGLDHVDTLESPSGPLSKDFESFDEARDLADRMTEEYLWTYVYDDAGELLYEASSYREQAQQVEMLSQEPHEGSKGDRRREPR*
Ga0137398_105976421	3300012683	Vadose Zone Soil	MQVQAPKGQYRVIGLDHVNTLDSPSGPLRTDFESFEEARDLADRMSEEYVWIYVYDDAGDVLYEAGSYREQVEQVKILSQEPPEDSKGEPRRKPR*
Ga0137395_104648412	3300012917	Vadose Zone Soil	MMQVQAPKGQYRVIGLDHVNTLDSPTGPLSKDFESFDEARDLADRMSEEYVWIYVYDDAGEVLYEAGSYREHVEQVKILSQEPPEDSKGEPRRKPR*
Ga0137396_105133252	3300012918	Vadose Zone Soil	MQVQAPKGQYRVIGLDHIDTLDSPSGPFSKDFESLDEARDLADRMTEEYLWTYVYDDAGKVLYEASSYREQAQQVEMLSQEPPEGSKGDPRRTPR*
Ga0137396_105151162	3300012918	Vadose Zone Soil	MQVQAPKGQYRVIGLDHVNTLDSPSGPLSKDFESFDEARDLADRMSEEYVWIYVYDDAGEVLYEAGSYREQIEQVKMLSQEPAEDSKGEPRRKPS*
Ga0137396_109817441	3300012918	Vadose Zone Soil	QATRGQYRVIGLDHIDTLESPSGPLSKDFESFDEARDSADRMTAEYLWTYVYDDAGELLYEASSYREQAQQVEMLSQEPPEGSKGDPRRTPR*
Ga0137394_100251233	3300012922	Vadose Zone Soil	MQVHAPKGQYRVIGLDHLDTLDSPTGPLSKDFESFDEARDLADRMIEEYLWTYVYNDAGELLYEASSYREQAQQVEMLSQEPPEGSKGEPRRTPR*
Ga0137394_110917102	3300012922	Vadose Zone Soil	MQVHAPKGQYRVIGLDHIDTLESPSGPLSKDFESFDEARDSADRMTEEYLWTYVYDDAGKLLYEASSYREQAQQVEILSQEPPEGSNGDPRRTPR*
Ga0137419_115524831	3300012925	Vadose Zone Soil	PKGQYRVIGLDHIDTLDSPSGPFSKDFESLDEARDLADRMTEEYLWTYVYDDAGKVLYEASSYREQAQQAEMLSQEPPEGSKGDPRRTPR*
Ga0137416_103013331	3300012927	Vadose Zone Soil	MQVQAPKGQYRVIGLDHVNTLDSPAGPLSKDFESFDEARDSADRMTEEYLWTYVYDDAGELLYEASSYREQAQQAEMLSQEPPEGSKGDPRRTPR*
Ga0137407_116947932	3300012930	Vadose Zone Soil	MQVQAPTGQYRVIGLDHIDTLDSPSGPFSKDFESLDEARDLADRMTEEYLWTYVYDDAGKVLYEASSYREQAQQAEMLSQEPPEGSKGDPRRTPR*
Ga0137410_101011562	3300012944	Vadose Zone Soil	MQVQAPKGQYRVIGLDHVNTLDSPSGPLRKDFESFYEARDLADRMSEEYVWIYVYDDAGEVLYEAGSYREQVEQAKMLDQEPPEDSKGELRRKPS*
Ga0137410_103872411	3300012944	Vadose Zone Soil	MQVHAPKGQYRVIGLDHIDTLDSPSGPLSKDFESLDEARDLADRMTEEYLWTYVYDDAGKVLYEASSYREQAQQAEMLSQEPPESSK
Ga0137410_112594921	3300012944	Vadose Zone Soil	MQVHAPKGHYRVIGLDHIDTLESPSGPLSKDFESFNEARGSANSMTQEYLWTYVYDDAGELLYEASSYRKQAQQAEMLSQEPPEGSEGDPRRTPR*
Ga0137405_11445161	3300015053	Vadose Zone Soil	MQVQAPKGQYRVIGLDHIDTLDSPSGPLSKDFESFDAAKDLADRMTEEYLWTYVYDDAGALLYEASSYREQAQQVEMLSQEPHDSSKGDPRRKPQ*
Ga0137418_102840952	3300015241	Vadose Zone Soil	MQVQAPKGQYRVIGLDHVNTLDSPTGPLSKDFESFDEARDLADRMSEEYVWIYVYDDAGEVLYEAGSYREQVEQVKILSQEPPEDSKGEPRRKPR*
Ga0137409_103779621	3300015245	Vadose Zone Soil	MQVHAPKGQYRVIGLDHIDTLDSPSGPLSKDFESLDEARDLADRMTEEYLWTYVYDDAGKVLYEASSYREQAQQAEMLSQEPPESSKGDPRRTTR*
Ga0134073_100590173	3300015356	Grasslands Soil	MQVQAPKGQYRVIGLDHVNTLDSPTGPLSKDFESFDEARDLADRMSEEYLWLYVYDDAGEVLYEAGSYREQAQQVEMLL*
Ga0179592_101627901	3300020199	Vadose Zone Soil	MQVQAPKGQYRVIGLDHIDTLDSPSGPLSKDFESFDAAKDLADRMTEEYLWTYVYDDAGELLYEASSYREQAQQVEMLSQEPHDSSKGDPRRKPQ
Ga0210407_109770121	3300020579	Soil	STFVLAFVDTVSYEDKCRLGGIMQVHAPKGQYRVIGLDHIDTLDSPSGPFSKDFESLDEARDLADRMTEEYLWTYVYDDAGKVLYEASSYREQAQQAEMLSQEPPEGSKGDPRRTPR
Ga0179596_103938331	3300021086	Vadose Zone Soil	MQVQAPKGQYRVIGLDHIDTLDSPSGPLSKDFESFDAAKDLADRMTEEYLWTYVYDDAGELLYEASSYQEQAQQVEMLSQEPHDSSKGDPRRKPQ
Ga0210406_103101722	3300021168	Soil	RVIGLDHIDTLDSPSGPFSKDFESLDEARDLADRMTKEYLWTYVYDDAGKVLYEASSYREQAQQAEMLSQEPPEGSKGDPRRTPR
Ga0210409_100052545	3300021559	Soil	MQVHAPKGQYRVIGLDHIDTLDSPSGPLSKDLESFHAAKDLADRMTEEYLWTYVYDDAGDLLYEASSYREQAQQVEMLSQEPDEGSKGDPRREPR
Ga0210409_1000593710	3300021559	Soil	MQVHAPKGQYRVIGLDHIDTLESPSGPLSKDFESFDEARDSADRMTEEYLWTYVYDDAGKLLYEASSYREQAQQVEILSQEPPEGSKGDPRRTPR
Ga0209647_10498613	3300026319	Grasslands Soil	MQVQAPKGQYRVIGLDHIDTLDSPSGPLSKDFESFDAAKDLADRMTEEYLWTYVYDDAGELLYEASSYREQAQQVEMLSQEPHDRSKGDPRRKPQ
Ga0257150_10722991	3300026356	Soil	MQVQAPKGQYRVIGLDHIDTLDSPSGPLSKDFESFDAAKDLADRMTEEYLWTYVYDDAGELLYEASSYREQAQQVKMLSQEPHDSSKGDSRRKPQ
Ga0257164_10643511	3300026497	Soil	MQVRAPKGQYRVIGLDHIDTLDSPSGPLSKDFESFDAAKDLADRMTEEYLWTYVYDDAGELLYEASSYREQAQQVEMLSQEPHDSSKGDPRRKPQ
Ga0209648_101052902	3300026551	Grasslands Soil	MQVQAPKGQYRVIGLDHIDTLDSPSGPLSKDFESFDAAKDLADRMTAEYLWTYVYDDAGELLYEASSYREQAQQVEMLSQEPHDSSKGDLRRKPQ
Ga0209648_104750971	3300026551	Grasslands Soil	MQVQAPKGQYRVIGLDHIDTLDSPSGPLSKDFESFDAAKDLADRMTEEYLWTYVYDDAGELLYEASSYREQAQQVEMLSQEPHDTSKGDPRRKPQ
Ga0209648_104841692	3300026551	Grasslands Soil	APKGQYRVIGLDHIDTLDSPSGPLSKDFESFDAAKDLADRMTEEYLWTYVYDDAGELLYEASSYREQAQQVEMLSQEPHDSSKGDPRRKPQ
Ga0209215_10532281	3300027266	Forest Soil	MQVQAPKGQYRVIGLDHVNTLDSPTGPLRKDFESFEDARDLADRMSEEYVWIYVYDDAGEILYEAGSYREQVEQVKMLDQKPPEDSEGEPRRKPR
Ga0209701_100610623	3300027862	Vadose Zone Soil	MQVHAPKEQYRVIGLDHIDTLDSPSGPLCKDFENFEEARDLADRMTDEYLWTYVYDDAGKLLYEASSYREQAQQVEMLRQEPPEGSKGDPRRTPR
Ga0209590_100397512	3300027882	Vadose Zone Soil	MQVQAPKGQYRVIGLDHIDTLDSPSGLLSKDFETFDAAKDLADRMTAEYLWTYVYDDAGELLYEASSYREQAQQVEMLSQEPHDSSKGDLPRKPQ
Ga0209380_100665833	3300027889	Soil	MQVHAPKGQYRVIGLDHINTLDSPSGPLSKDLESFDEARDLADRLTEEYLWTYVYDDAGKLLFEANSYREQARQVEMLSQEPPEGSKGDPRRTPP
Ga0209698_111929571	3300027911	Watersheds	MQVQAPKGQYRVIGMDRIDTLSSPEGPLSKDCDTFDEAKDLADRSGESYLWTYVYDDSGELLYEAGSYREHAESLKREPPAGSKT
Ga0137415_102647593	3300028536	Vadose Zone Soil	MQVQAPKGQYRVIGLDHVNTLDSPTGPLSKDFESFDEARDLADRMSEEYHWIYVYDDAGEVLYEAGSYREQVEQVKILSQEPPEDSKGEPRRKPR
Ga0073994_100043182	3300030991	Soil	MQVQGPKGQYRVIGLDHVNTLDSPTGPLSKDFESFDEARDLADRMSEEYVWLYVYDDAGEVLYEAGSYREQVEQVKILSQEPPEDSKGEPRRKPR
Ga0073994_123352161	3300030991	Soil	MQVQAQKGQYRVIGLDHIDTLHSPSGPLSKDFESFDEARDLADRMKEEYLWTCVYNDAGELLYEASSYQKHVEMLNQEPREAP
Ga0307374_102603333	3300031670	Soil	MQVQAPKGQYRVIGLDRIDTLESPSGPLCEDYESFDEARDFADQSTELYFWTYVYDDNGELLYEANSYREHVQMLNQELPERSKSELRRKPQ
Ga0307479_114588282	3300031962	Hardwood Forest Soil	MQVQAPKGQYRVIGMDRIDTLSSPEGPLSKDCDTFHEAKDLADRSGESYLWTYVYNDSGELLYEAGSYREHAESLKQEPPAGSKT
Ga0307471_1000057727	3300032180	Hardwood Forest Soil	MQVQAPKGQYRVIGLDHVNTLDSPTGPLRKDFESFEEARDLADRMSEEYVWIYVYDDAGAILYEAGSCREQVEQVKMLDQQPPEDSEGEPRRKPR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F105662

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences