Metagenome / Metatranscriptome Family F105677

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F105677
Family Type	Metagenome / Metatranscriptome
Number of Sequences	100
Average Sequence Length	103 residues
Representative Sequence	MMRGPKFAVFAVVLASLPLTGVSRPAQQRERALCCLCMCHSVDERQCAQACVDMQHGTKIIEEPEMNACTKSCLKHGVRQIFFSEDGTRFVITPAVNK
Number of Associated Samples	70
Number of Associated Scaffolds	100

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	72.00 %
% of genes near scaffold ends (potentially truncated)	26.00 %
% of genes from short scaffolds (< 2000 bps)	67.00 %
Associated GOLD sequencing projects	64
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.29

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (21.000 % of family members)
Environment Ontology (ENVO)	Unclassified (42.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (59.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 26.19% β-sheet: 11.90% Coil/Unstructured: 61.90%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.29
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.29
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 100 Family Scaffolds
PF00270	DEAD	23.00
PF04253	TFR_dimer	14.00
PF00450	Peptidase_S10	6.00
PF13414	TPR_11	3.00
PF00271	Helicase_C	3.00
PF08282	Hydrolase_3	3.00
PF00912	Transgly	2.00
PF00196	GerE	2.00
PF04389	Peptidase_M28	2.00
PF08494	DEAD_assoc	2.00
PF03590	AsnA	1.00
PF11741	AMIN	1.00
PF04909	Amidohydro_2	1.00
PF13360	PQQ_2	1.00
PF14384	BrnA_antitoxin	1.00
PF01380	SIS	1.00
PF13492	GAF_3	1.00
PF03734	YkuD	1.00

COG ID	Name	Functional Category	% Frequency in 100 Family Scaffolds
COG2939	Carboxypeptidase C (cathepsin A)	Amino acid transport and metabolism [E]	6.00
COG0560	Phosphoserine phosphatase	Amino acid transport and metabolism [E]	3.00
COG0561	Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatases	Coenzyme transport and metabolism [H]	3.00
COG1877	Trehalose-6-phosphate phosphatase	Carbohydrate transport and metabolism [G]	3.00
COG2217	Cation-transporting P-type ATPase	Inorganic ion transport and metabolism [P]	3.00
COG3769	Mannosyl-3-phosphoglycerate phosphatase YedP/MpgP, HAD superfamily	Carbohydrate transport and metabolism [G]	3.00
COG0744	Penicillin-binding protein 1B/1F, peptidoglycan transglycosylase/transpeptidase	Cell wall/membrane/envelope biogenesis [M]	2.00
COG1201	Lhr-like helicase	Replication, recombination and repair [L]	2.00
COG4953	Membrane carboxypeptidase/penicillin-binding protein PbpC	Cell wall/membrane/envelope biogenesis [M]	2.00
COG5009	Membrane carboxypeptidase/penicillin-binding protein	Cell wall/membrane/envelope biogenesis [M]	2.00
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	1.00
COG2502	Asparagine synthetase A	Amino acid transport and metabolism [E]	1.00
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	1.00

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	82.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	68.00 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	11.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	68.00 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	11.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	68.00 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	11.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	68.00 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	4.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	68.00 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	4.00 %
Unclassified	root	N/A	0.00 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000579\|AP72_2010_repI_A01DRAFT_1006139	All Organisms → cellular organisms → Bacteria	2108	Open in IMG/M
3300000955\|JGI1027J12803_101720540	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1455	Open in IMG/M
3300001867\|JGI12627J18819_10175718	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	868	Open in IMG/M
3300004633\|Ga0066395_10102701	All Organisms → cellular organisms → Bacteria	1381	Open in IMG/M
3300004633\|Ga0066395_10855920	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	548	Open in IMG/M
3300004633\|Ga0066395_10937812	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	525	Open in IMG/M
3300005332\|Ga0066388_101503018	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1178	Open in IMG/M
3300005332\|Ga0066388_101927359	All Organisms → cellular organisms → Bacteria	1056	Open in IMG/M
3300005434\|Ga0070709_10000342	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	29015	Open in IMG/M
3300005436\|Ga0070713_101051322	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	786	Open in IMG/M
3300005542\|Ga0070732_10001678	All Organisms → cellular organisms → Bacteria	12019	Open in IMG/M
3300005554\|Ga0066661_10006174	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5658	Open in IMG/M
3300005610\|Ga0070763_10202096	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1060	Open in IMG/M
3300005764\|Ga0066903_100262079	All Organisms → cellular organisms → Bacteria	2684	Open in IMG/M
3300005764\|Ga0066903_100445944	All Organisms → cellular organisms → Bacteria	2159	Open in IMG/M
3300006028\|Ga0070717_10006414	All Organisms → cellular organisms → Bacteria	8651	Open in IMG/M
3300006052\|Ga0075029_100007183	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6135	Open in IMG/M
3300006052\|Ga0075029_100100382	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1736	Open in IMG/M
3300006086\|Ga0075019_10007804	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6024	Open in IMG/M
3300006086\|Ga0075019_10016415	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4136	Open in IMG/M
3300006086\|Ga0075019_10170220	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1280	Open in IMG/M
3300006086\|Ga0075019_10700871	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	640	Open in IMG/M
3300006162\|Ga0075030_100121597	All Organisms → cellular organisms → Bacteria	2122	Open in IMG/M
3300006162\|Ga0075030_100278309	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1339	Open in IMG/M
3300006162\|Ga0075030_100460205	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1012	Open in IMG/M
3300006174\|Ga0075014_100279538	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	872	Open in IMG/M
3300006174\|Ga0075014_100777070	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	564	Open in IMG/M
3300006175\|Ga0070712_100000626	All Organisms → cellular organisms → Bacteria	20794	Open in IMG/M
3300006175\|Ga0070712_101730046	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	547	Open in IMG/M
3300006800\|Ga0066660_10643710	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	880	Open in IMG/M
3300009012\|Ga0066710_102836647	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	683	Open in IMG/M
3300010043\|Ga0126380_10243453	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1239	Open in IMG/M
3300010043\|Ga0126380_10299724	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1143	Open in IMG/M
3300010048\|Ga0126373_10410775	All Organisms → cellular organisms → Bacteria → Acidobacteria	1380	Open in IMG/M
3300010358\|Ga0126370_12294995	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	534	Open in IMG/M
3300010359\|Ga0126376_10859413	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	892	Open in IMG/M
3300010360\|Ga0126372_10353838	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1319	Open in IMG/M
3300010360\|Ga0126372_12394824	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	578	Open in IMG/M
3300010360\|Ga0126372_12593124	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	558	Open in IMG/M
3300010361\|Ga0126378_10769058	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1073	Open in IMG/M
3300010361\|Ga0126378_11649480	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	728	Open in IMG/M
3300010361\|Ga0126378_12877144	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	549	Open in IMG/M
3300010366\|Ga0126379_10159223	All Organisms → cellular organisms → Bacteria	2117	Open in IMG/M
3300010376\|Ga0126381_101074591	All Organisms → cellular organisms → Bacteria	1162	Open in IMG/M
3300010398\|Ga0126383_10072815	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2963	Open in IMG/M
3300010398\|Ga0126383_10204491	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1899	Open in IMG/M
3300010398\|Ga0126383_12076846	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	655	Open in IMG/M
3300011120\|Ga0150983_16684830	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	624	Open in IMG/M
3300012199\|Ga0137383_10384739	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1028	Open in IMG/M
3300012200\|Ga0137382_10011142	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4804	Open in IMG/M
3300012944\|Ga0137410_11468323	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	594	Open in IMG/M
3300015371\|Ga0132258_13098237	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1150	Open in IMG/M
3300015372\|Ga0132256_100015485	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	6679	Open in IMG/M
3300016294\|Ga0182041_10858937	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	814	Open in IMG/M
3300016341\|Ga0182035_10267363	All Organisms → cellular organisms → Bacteria	1388	Open in IMG/M
3300016445\|Ga0182038_10105115	All Organisms → cellular organisms → Bacteria	2061	Open in IMG/M
3300017823\|Ga0187818_10153244	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1003	Open in IMG/M
3300020579\|Ga0210407_10055751	All Organisms → cellular organisms → Bacteria → Acidobacteria	2954	Open in IMG/M
3300020580\|Ga0210403_11074474	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	626	Open in IMG/M
3300020581\|Ga0210399_10121768	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2144	Open in IMG/M
3300020583\|Ga0210401_10007083	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	11310	Open in IMG/M
3300021180\|Ga0210396_10024917	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5538	Open in IMG/M
3300021180\|Ga0210396_10393027	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1219	Open in IMG/M
3300021180\|Ga0210396_10410983	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1189	Open in IMG/M
3300021403\|Ga0210397_10075701	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2218	Open in IMG/M
3300021559\|Ga0210409_10007474	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	11256	Open in IMG/M
3300021560\|Ga0126371_10025914	All Organisms → cellular organisms → Bacteria	5451	Open in IMG/M
3300021560\|Ga0126371_10026771	All Organisms → cellular organisms → Bacteria → Acidobacteria	5364	Open in IMG/M
3300021560\|Ga0126371_10533657	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1322	Open in IMG/M
3300021560\|Ga0126371_11243463	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	880	Open in IMG/M
3300021560\|Ga0126371_13363912	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	540	Open in IMG/M
3300021861\|Ga0213853_11108270	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	872	Open in IMG/M
3300022533\|Ga0242662_10302864	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	534	Open in IMG/M
3300025939\|Ga0207665_11266201	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	588	Open in IMG/M
3300026895\|Ga0207758_1017835	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	691	Open in IMG/M
3300027330\|Ga0207777_1077110	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	581	Open in IMG/M
3300027842\|Ga0209580_10000617	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	18326	Open in IMG/M
3300027874\|Ga0209465_10105511	All Organisms → cellular organisms → Bacteria	1383	Open in IMG/M
3300027898\|Ga0209067_10071314	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1782	Open in IMG/M
3300027911\|Ga0209698_10002851	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	19310	Open in IMG/M
3300027911\|Ga0209698_10068699	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3036	Open in IMG/M
3300027911\|Ga0209698_10155862	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1870	Open in IMG/M
3300027911\|Ga0209698_10235609	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1467	Open in IMG/M
3300027911\|Ga0209698_10590981	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	854	Open in IMG/M
3300031720\|Ga0307469_10516410	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1051	Open in IMG/M
3300031740\|Ga0307468_100050826	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2163	Open in IMG/M
3300031820\|Ga0307473_10242621	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1099	Open in IMG/M
3300031890\|Ga0306925_10950606	All Organisms → cellular organisms → Bacteria	880	Open in IMG/M
3300031910\|Ga0306923_11207172	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	808	Open in IMG/M
3300031941\|Ga0310912_10644619	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	823	Open in IMG/M
3300031954\|Ga0306926_10220387	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2354	Open in IMG/M
3300031954\|Ga0306926_11701807	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	720	Open in IMG/M
3300032059\|Ga0318533_10611685	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	800	Open in IMG/M
3300032076\|Ga0306924_10465270	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1444	Open in IMG/M
3300032174\|Ga0307470_10112016	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1590	Open in IMG/M
3300032180\|Ga0307471_101411863	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	856	Open in IMG/M
3300032770\|Ga0335085_10000759	All Organisms → cellular organisms → Bacteria	82456	Open in IMG/M
3300032782\|Ga0335082_10125575	All Organisms → cellular organisms → Bacteria	2513	Open in IMG/M
3300032829\|Ga0335070_10009598	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	11320	Open in IMG/M
3300033289\|Ga0310914_10671569	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	931	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.00%
Host-Associated	Host-Associated	2.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	79.00%
Aquatic	Environmental → Aquatic	19.00%
Plants	Host-Associated → Plants	2.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	79.00%
Sediment	Environmental → Aquatic → Sediment	17.00%
Freshwater	Environmental → Aquatic → Freshwater	2.00%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	57.00%
Loam	Environmental → Terrestrial → Soil → Loam	19.00%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	17.00%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.00%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.00%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.00%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.00%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	27.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.00%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	17.00%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	13.00%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.00%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.00%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.00%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.00%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.00%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	21.00%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	17.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.00%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	10.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.00%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.00%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.00%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.00%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.00%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.00%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.00%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	1.00%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.00%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.00%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.00%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.00%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.00%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.00%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000579	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A01	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300021861	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026895	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 12 (SPAdes)	Environmental	Open in IMG/M
3300027330	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 35 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AP72_2010_repI_A01DRAFT_10061392	3300000579	Forest Soil	MHRISSLIRLMGRLRPSMKKSPKIAIFAVLLASLPLTGVSRPAQEGGGGLCCLCMCHSVDETQCSRDCIRMQHGTKIIEENEMNSCTKSCLKHGVLQIFFSEDGTRFVVTPSSKQ*
JGI1027J12803_1017205401	3300000955	Soil	MRKSPKFAIVAVVLAALPLTGVSRRAQQRERGLCCLCMCHSVDENQCAQVCIKMQHGTKIIEEPEMNVCTKSCLRHGVSQIFFSEDGSQFVITPAVTK*
JGI12627J18819_101757181	3300001867	Forest Soil	MKRSPKFAVFAVVLASLPLTGVSRPAQQRERALCCLCMCHSVDEGQCAQVCVNMQHGTKIIEEPEMNACTKSCLRHGVRQIFFSEDGTQF
Ga0066395_101027011	3300004633	Tropical Forest Soil	MHRISSLIRLMGRLRPSMNKGPKFAIFAVLLASLPLTGVSRPAPEGGGLCCLCMCHSVDETQCSRDCIRMQHGSKIIEENEMNSCTKSCLKHGVRQIFFSEDGTRFVVTPSSKQ*
Ga0066395_108559201	3300004633	Tropical Forest Soil	PLTGISRPVPPKERALCCLCMCHSVDENKCTQACVSMQHGTKIVEEPEMNACTMNCLKQGVQQIFFSEDGTRFVITPAVRK*
Ga0066395_109378121	3300004633	Tropical Forest Soil	MKRSPKFAVLAVVVAALPLTGISRPVGQQQRGLCCLCMCHAVDESHCSRACVKMQHGTKIIEEPEMNACTKSCLKHGVQQIVFSEDGTKFVITPVIRK*
Ga0066388_1015030182	3300005332	Tropical Forest Soil	MQRISLLIWLLRPLQASMKTSPTIAILAVVLASLPLTGVSRPVPKKERALCCLCMCHSADENQCSQACVKMQHGTKIIEEPAMNACTRSCLKQGVRQIFFSEDGTRFVITPSGTK*
Ga0066388_1019273592	3300005332	Tropical Forest Soil	KIGPITTVIWRSGTKGYKMHRISSLTRLMGRLRPSMNKGPKFAIFAVLLASLPLTGVSRPAQEAGGLCCLCMCHSVDETQCSRDCIRMQHGTKIIEENEMNSCTKSCLKHGVRQIFFSEDGTRFVVTPSSKQ*
Ga0070709_100003423	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MHRISSLIRLMGRLRPSMKKSPKIAIFAVLLASLPLTGVSRPAQEGGGLCCLCMCHSVDETQCSRDCIRMQHGTKIIEEKEMNSCTKTCLKHGVRQIFFSEDGTRFVVTPSSKQ*
Ga0070713_1010513221	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MQRISTLIWLTYRFQTSMKRSPKFALLVVVIASLPLTGISLPVPPKERALCCLCMCHSVDESQCTQACVNMQHGTKIVEEPEMNACTKSCLKHGVQQIFFSEDGTRFVITPGARK*
Ga0070732_100016783	3300005542	Surface Soil	MRGPKFAVLAVVLASLPLTGVSRPAQQRERALCCLCMCHSVDEGQCAQVCVNMQHGTKIIEEPEMKACTKSCVRHGVRQIFFSEDGTQFTITPALTK*
Ga0066661_100061744	3300005554	Soil	MMRGPKFAVFAVVLASLPLTGVSRPAQQRERALCCLCMCHSVDERQCAQSCVDMQHGTKIIEEPEMNACTKSCLKHGVRQIFFSEDGTRFLITPAVSK*
Ga0070763_102020961	3300005610	Soil	MMRGSKFAVLAVVLASLPLTGVSRPAQQRERALCCLCMCHSVDEGQCAQVCVNMQHGTKIIEEPEMKACTKSCVRHGVRQIFFSEDGTHFTITPALSK*
Ga0066903_1002620792	3300005764	Tropical Forest Soil	MKRSPKFALLAVVVASLPLTGISRPVPPKERALCCLCMCHSVDENKCTQACVSMQHGTKIVEEPEMNACTMNCLKQGVQQIFFSEDGTRFVITPAVRK*
Ga0066903_1004459442	3300005764	Tropical Forest Soil	MQPISLLIWLLRPLQASMKTSPKIAILAVVLASLPLTGVSRPLPKKERALCCLCMCHSADENQCSQACVKMQHGTKIIEEPAMNACTRSCLKQGVRQIFFSEDGTRFVITPSGTK*
Ga0070717_100064142	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MKRSPKFALLVVVIASLPLTGISLPVPPKERALCCLCMCHSVDESQCTQACVNMQHGTKIVEEPEMNACTKSCLKHGVQQIFFSEDGTRFVITPGARK*
Ga0075029_1000071833	3300006052	Watersheds	MRSPKFAVLAVVLAALPMTGVSRPAAQRERALCCLCTCHSFDENQCAQVCIKMQRGTKIIEEPEMNACTKSCLRQRVRQIFFSGDGTQFVITPALTK*
Ga0075029_1001003821	3300006052	Watersheds	MRSPKFAVLAVVLAALPLTGVSRPAQQRERALCCLCTCHSFDENQCAKACINMQRGTKIIEEPEMNACTKSCLRHGVRQIFFSEDGTQFVVSPTLTK*
Ga0075019_100078042	3300006086	Watersheds	MMRSPKLAVLAVVLAALPLTGVSRPAQQRERALCCLCTCHSFDENQCAKACINMQRGTKIIEEPEMNACTKSCLRHGVRQIFFSEDGTQFVVSPTLTK*
Ga0075019_100164152	3300006086	Watersheds	MHRISSLKWLMYRLTSSMKKSPKLAILGVILASLPLTGVSRPVPERQGGLCCLCMCHSVDESQCARDCVKMQHGTKIIEESEMNRCTKTCLKHGVRQILFSEDGTRFVVTPSSRK*
Ga0075019_101702203	3300006086	Watersheds	MMRSPKFAVLAVVLAALPMTGVSRPAAQRERALCCLCTCHSFDENQCAQVCIKMQRGTKIIEEPEMNACTKSCLRQRVRQIFFSGDGTQFVITPALTK*
Ga0075019_107008712	3300006086	Watersheds	MQRIGGLMWLIDRFGTSMVRGPKFAVFAVILAALPLTGVSRPAQQRERGLCCLCMCHSVDESSCARACVTMQHGTRIIEEPEMNACTKSCLRHGVRQIFFSEDGTQFVVTPALTK*
Ga0075030_1001215971	3300006162	Watersheds	MRRSPKFAVFAVILASLPMTGVSRPAQQRERALCCLCMCHSVDERQCAQACVNMQHGTKIIDEPEMKACTKTCLRHGVRQIFFSEDGTQFTITPALTK*
Ga0075030_1002783091	3300006162	Watersheds	AVVLASLPLTGVSRPAQQRERALCCLCMCHSVDENQCAQVCVNMQHGTKIIEEPEMNSCTKSCLRHGVRQIFFSEDGTRFVITPALSK*
Ga0075030_1004602051	3300006162	Watersheds	MESFGTSMMRSPKFAVVAVVLAALPLTGVSRPAQQRERALCCLCTCHSFDENQCAKACINMQRGTKIIEEPEMNACTKSCLRHGVRQIFFSEDGTQFVVSPTL
Ga0075014_1002795382	3300006174	Watersheds	MHRISSLKWLMYRLTSSMKKSPKLAILGVILASLPLTGVSRPVPERQGGLCCLCMCHSVDESQCARDCVKMQHGTKIIEESEMNRCTKTCLKHGVRQILFSEDGTRFVVTPATTK*
Ga0075014_1007770701	3300006174	Watersheds	LPLTGVSRPAQQRERALCCLCMCHAVDENQCAQVCVKMQHGTKIIEEPEMNACTKSCLRQGVRQIFFSEDGTQFVITPALTK*
Ga0070712_10000062617	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MKKSPKIAIFAVLLASLPLTGVSRPAQEGGGLCCLCMCHSVDETQCSRDCIRMQHGTKIIEEKEMNSCTKTCLKHGVRQIFFSEDGTRFVVTPSSKQ*
Ga0070712_1017300461	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MHRTSSVIWLTGRLRPPMMKSPKIAIFAVLLASLPLTGVSRPAQEGGGGLCCLCMCHSVDETRCSRECVRMQHGTKIIEENEMNSCTKTCLKHGVRQIFFSDDGTRFVVTPSSNK*
Ga0066660_106437101	3300006800	Soil	MQRIDALIWLINRFGTSMMRGPKFAVFAVVLASLPLTGVSRPAQQRERALCCLCMCHAVDERQCAQSCVDMQHGTKIIEEPEMNACTKSCLKHGVRQIFFSEDGTRFVITPAVSK*
Ga0066710_1028366471	3300009012	Grasslands Soil	VDLDGKAVRDIHDEGPKFAVFALVLASLPLTGVSRATQQRGRELCCLYMCHAVDERQCAQSCVDMQHGTKIIEEPEMNACTKSCLKHGVRQIFFSEDGTRFVITPAVSK
Ga0126380_102434532	3300010043	Tropical Forest Soil	MKRSPKFAVLAVVLAALPMTGISRPAPQQERALCCLCMCHSVDESQCSQACVKMQHGTKIIEEPEMNACTKSCLKHGVQQIFFSEDGTRFVITPVVRK*
Ga0126380_102997242	3300010043	Tropical Forest Soil	MNKGPKFAIFAVLLASLPLTGVSRPAQEAGGLCCLCMCHSVDETQCSRDCIRMQHGTKIIEENEMNSCTKSCLKHGVRQIFFSEDGTRFVVTPSSKQ*
Ga0126373_104107751	3300010048	Tropical Forest Soil	MKMQRINWLIWLLNRLQTSMKRSPKIAVLAVLLAALPLTGATRPVEPEHALCCLCMCHSVDETQCAQACIKMQHGTKIVEERDMNACTKTCLNHGVRQIFFSEDGSRFEITPALAK*
Ga0126370_122949951	3300010358	Tropical Forest Soil	MKRSPKFALLAVVVASLPLTGISRPVPPKEHALCCLCMCHSVDENKCTQACVSMQHGTKIVEEPEMNACTKNCLKQGVQQIFFSEDGTRFVITPAVRK*
Ga0126376_108594131	3300010359	Tropical Forest Soil	SMKTSPTIAILAVVLASLPLTGVSRPLPKKERALCCLCMCHSADENQCSQACVKMQHGTKIIEEPAMNACTRSCLKQGVRQIFFSEDGTRFVITPSGTK*
Ga0126372_103538382	3300010360	Tropical Forest Soil	MQRISLLIWLLRPLQASMKTSPTIAILAVVLASLPLTGVSRPLPKKERALCCLCMCHSADENQCSQACVKMQHGTKIIEEPAMNACTRSCLKQGVRQIFFSEDGTRFVITPSGTK*
Ga0126372_123948242	3300010360	Tropical Forest Soil	TSMKRSPKIAVLAVLLAALPLTGATRPVEPEHALCCLCMCHSVDETQCAQACIKMQHGTKIVEERDMNACTKTCLKHGVRQIFFSEDGSRFEITPALAK*
Ga0126372_125931241	3300010360	Tropical Forest Soil	MHRVSSLHWLMGRFRPSMKKSPKFAIFAVVLASLPLTGVSRPVADSRGGLCCLCMCHSVDETQCSRDCIRMQHGTKIVEEPEMKACTKTCLKQGVRQIFFSEDGTRFIVTPSAGK*
Ga0126378_107690581	3300010361	Tropical Forest Soil	MKRSPKFALLAVVLASLPLTGISRPVPPKERALCCLCMCHSVDENKCTQACVSMQHGTKIVEEPEMNACTKNCLKQGVQQIFFSEDGTRFVITPAVRK*
Ga0126378_116494802	3300010361	Tropical Forest Soil	MKRSPKFAVLAVVVAALPLTGISRPVGQQQRGLCCLCMCHAVDESQCSRACVKMQHGTKIIEEPEMNACTKSCLKHGVQQIVFSEDGTKFVITPVIR
Ga0126378_128771441	3300010361	Tropical Forest Soil	MQQISPLIWLLNRFKTPGKWAPRFALLAVVVASLTLTGVSRPVAPRERALCCLCNCHSMDENRCARVCVKMQHGRKIIAEAAMNACTRSCLRHGVRQILFSEDGTKFVITSSSSK*
Ga0126379_101592232	3300010366	Tropical Forest Soil	MKRSPKFAVLAVVVAALPLTGISRPVGQQQRGLCCLCMCHAVDESHCSRACVKMQHGTKIIEEPEMNACTKSCLKHGVQQIFFSEDGTKFVITPVIRK*
Ga0126381_1010745912	3300010376	Tropical Forest Soil	MQRISWLIWLLNRLQTSMKRSPKIALLAVLLAALPLTGVSRPVPKREHALCCLCMCHSVDETQCAQACIKMQHGTKIVEERDMNACTKTCLKHGVRQIFFSEDGSRFEITPAVAK*
Ga0126383_100728152	3300010398	Tropical Forest Soil	MKRSPKFAVLAVLVASLPLTGISRPVPQHERALCCLCMCHSVDESQCSQACVNMQHGTKIVEEPEMNACTKSCLKQGVRQILFSEDGTSFLITPGVRK*
Ga0126383_102044912	3300010398	Tropical Forest Soil	MQRISLLIWLLRPLQASMKTSPTIAILAVVLASLPLTGVSRPVPKKERALCCLCMCHSADENQCSQACMKMQHGTKIIEEPAMNACTRSCLKQGVRQIFFSEDGTRFVITPSGTK*
Ga0126383_120768462	3300010398	Tropical Forest Soil	NKGPKFAIFAVLLASLPLTGVSRPAQEGGGLCCLCMCHSVDETQCSRDCIRMQHGTKIIEENEMNSCTKSCLKHGVRQIFFSEDGTRFVVTPSSKQ*
Ga0150983_166848301	3300011120	Forest Soil	FFGTSMMRGSKFAVLAVVLASLPLTGVSRPAQQRERALCCLCMCHSVDEGQCAQVCVNMQHGTKIIEEPEMKACTKSCVRHGVRQIFFSEDGTHFTITPALSK*
Ga0137383_103847391	3300012199	Vadose Zone Soil	MMRGPKFAVFAVVLASLPLTGVSRPTLQRERALCCLCMCHSVDERQCAQACVDMQHGTKIIEEPEMNACTKSCLKHGVRQIFFSEDGTRFLITPAVSK*
Ga0137382_100111422	3300012200	Vadose Zone Soil	MMRGPKFAVFAVVLASLPLTGVSRPAQQRERALCCLCMCHAVDERQCAQSCVDMQHGTKIIEEPEMNACTKSCLKHGVRQIFFSEDGTRFLITPAVSK*
Ga0137410_114683231	3300012944	Vadose Zone Soil	TNRHVKFLMDRIGTSMKRKRKFAVLAVIFAALPLTGVSRPAQQRERALCCLCMCHSFDENQCAKACIAMQRGAKIIEEPEMNACTKSCLRHGVRQIFFSEDGTQFVVSPSLTK*
Ga0132258_130982371	3300015371	Arabidopsis Rhizosphere	MQRIGTLIWLMDRFGTSMRKSPKVAIVAVVLAALPLTGVSRPAQQRERGLCCLCMCHSVDESQCAQVCINMQHGTKIIEEPEMNACTKSCLRYGVRQIFFSEDGTQFVITPALTK*
Ga0132256_1000154855	3300015372	Arabidopsis Rhizosphere	MQRIGTLIWLMDRFGTSMRKSPKFAIVAVVLAALPLTGVSRPAQQREGGLCCLCMCHSVDESQCAQVCINMQHGTKIIEEPEMNACTKSCLRYGVRQIFFSEDGTQFVITPALTK*
Ga0182041_108589371	3300016294	Soil	MQRISTLIWLTYRFRTSMKRSPKFAFLAVVVASLPLTGISRPVPPKERALCCLCMCHSVDENKCTQACVSMQHGTKIVEEPEMNACTKNCLKQGVQQIFFSEDGTRFV
Ga0182035_102673632	3300016341	Soil	MQRISSLIWLLYRFETSMKWSPKPALLAVVIASLPLTGVSRPVAQQERALCCLCTCHSVDENRCAQVCVKMQHGSKIIEEPEMNACTKSCLRHGVQQIFFSEDGTRFVITSSSSK
Ga0182038_101051152	3300016445	Soil	MKRSPKFALLAVVVASLPLTGISRPVPPKERALCCLCMCHSVDENKCTQACVSMQHGTKIVEEPEMNACTKNCLKQGVQQIFFSEDGTRFVITPAVRK
Ga0187818_101532442	3300017823	Freshwater Sediment	MMRSPKFAVLAVVLAALPMTGVSRPAQQRERALCCLCACHAFDENQCAKACINMQHGTKIVEEPEMNACTKSCLRQGVRQIFFSGDGTQFVITPALTK
Ga0210407_100557514	3300020579	Soil	MMRGPKFAVFAVVLASLPLTGVSRPAQQRERALCCLCMCHSVDERQCAQACVDMQHGTKIIEEPEMNACTKSCLKHGVRQIFFSEDGTRFVITPAVNK
Ga0210403_110744742	3300020580	Soil	MRGSKFAVLAVVLASLPLTGVSRPAQQRERALCCLCMCHSVDEGQCAQVCVNMQHGTKIIEEPEMKACTKSCVRHGVRQIFFSEDGTQFTITPALSK
Ga0210399_101217682	3300020581	Soil	MMRGPKLAVLAVVLASLPLTGVSRPAQQRERALCCLCMCHSVDEGHCAQVCVNMQHGTKIIEEPEMKACTKSCLRQGVRQIFFSEDGTRFVITPALGK
Ga0210401_100070832	3300020583	Soil	MRGSKFAVLAVVLASLPLTGVSRPAQQRERALCCLCMCHSVDEGQCAQVCVNMQHGTKIIEEPEMKACTKSCVRHGVRQIFFSEDGTHFTITPALSK
Ga0210396_100249172	3300021180	Soil	MMRGSKFAVLAVVLASLPLTGVSRPAQQRERALCCLCMCHSVDEGQCAQVCVNMQHGTKIIEEPEMKACTKSCVRHGVRQIFFSEDGTQFTITPALSK
Ga0210396_103930271	3300021180	Soil	MMRGSKFAVLAVVLASLPLTGVSRPAQQRERALCCLCMCHSVDEGQCAQVCVNMQHGTKVIEEPEMKACTKSCVRHGVRQIFFSEDGTQFTITPALTK
Ga0210396_104109832	3300021180	Soil	MMRGSKFAVLAVVLASLPLTGVSRPAQQRERALCCLCMCHSVDEGQCAQVCVNMQHGTKIIEEPEMKACTKSCVRHGVRQIFFSEDGTQFTITPALTK
Ga0210397_100757012	3300021403	Soil	MMRGSKFAVLAVVLASLPLTGVSRPAQQRERALCCLCMCHSVDEGQCAQVCVNMQHGTKIIEEPEMKACTKSCVRHGVRQIFFSEDGTHFTITPALSK
Ga0210409_100074748	3300021559	Soil	MRGSKFAVLAVVLASLPLTGVSRPAQQRERALCCLCMCHSVDEGQCAQVCVNMQHGTKVIEEPEMKACTKSCVRHGVRQIFFSEDGTQFTITPALTK
Ga0126371_100259143	3300021560	Tropical Forest Soil	MQPISLLIWLLRPLQASMKTSPKIAILAVVLASSPLTGVSRPLPKKERALCCLCMCHSADENQCSQACVKMQHGTKIIEEPAMNACTRSCLKQGVRQIFFSEDGTRFVITPSGTK
Ga0126371_100267712	3300021560	Tropical Forest Soil	MKRSPKFALLAVVVASLPLTGISRPVPPKERALCCLCMCHSVDENKCTQACVSMQHGTKIVEEPEMNACTMNCLKQGVQQIFFSEDGTRFVITPAVRK
Ga0126371_105336572	3300021560	Tropical Forest Soil	MQRIGCLIRLMPRFKTSMKRSPKFAVLAVLVASLPLTGISRPVPQHERALCCLCMCHSVDESQCSQACVNMQHGTKIVEEPEMNACTKSCLKQGVRQILFSEDGTSFLITPSVRK
Ga0126371_112434631	3300021560	Tropical Forest Soil	MNKGPKFAIFAVLLASLPLTGVSRPAQEGGGLCCLCMCHSVDETQCSRDCIRMQHGTKIIEENEMNSCTKSCLKHGVRQIFFSEDGTRFVVTPSSKQ
Ga0126371_133639121	3300021560	Tropical Forest Soil	MQQISPLIWLLNRFKTPGKWAPRFALLAVVVASLTLTGVSRPVAPRERALCCLCDCHSMDENRCARVCVKMQHGRKIIAEAAMNACTRSCLRHGVQQIFFSEDGTRFVITSSSSKVSLP
Ga0213853_111082701	3300021861	Watersheds	MMRGPKFAVLAVVLASLPLTGVSRPAQQRERALCCLCMCHSVDENQCAQVCVNMQHGTKIIDEPDMKACTKTCLRHGVRQIFFSEDGTQFVITPAL
Ga0242662_103028641	3300022533	Soil	QRGRKGDKMQRIDALIWLINRFGTSMMRGPKFAVFAVVLASLPLTGVSRPAQQRERALCCLCMCHSVDERQCAQACVDMQHGTKIIEEPEMNACTKSCLKHGVRQIFFSEDGTRFVITPAVNK
Ga0207665_112662011	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MRKSPKFAIVAVVLAALPLTGVSRPAQQRERGLCCLCMCHSVDESQCAQVCINMQHGTKIIEEPEMNDCTKSCLRYGVRQIFFSEDGTPF
Ga0207758_10178351	3300026895	Tropical Forest Soil	MQRINWLIWLLNRFQTSMKRSPKIALLAVLLAALPLTGEPRPVSEQEHALCCLCMCHSVDETHCAQACIKMQHGTKIVEEPAMNACTKTCLKHGVRQILFSEDGTRFEITPALAK
Ga0207777_10771101	3300027330	Tropical Forest Soil	MQRINWLIWLLNRFQTSMKRSPKIALLAVLLAALPLTGEPRPVSEQEHALCCLCMCHSVDETHCAQACIKMQHGTKIVEEPAMNACTKTCLKHGVRQILFS
Ga0209580_100006174	3300027842	Surface Soil	MRGPKFAVLAVVLASLPLTGVSRPAQQRERALCCLCMCHSVDEGQCAQVCVNMQHGTKIIEEPEMKACTKSCVRHGVRQIFFSEDGTQFTITPALTK
Ga0209465_101055112	3300027874	Tropical Forest Soil	MHRISSLIRLMGRLRPSMNKGPKFAIFAVLLASLPLTGVSRPAPEGGGLCCLCMCHSVDETQCSRDCIRMQHGTKIIEENEMNSCTKSCLKHGVRQIFFSEDGTRFVVTPSSKQ
Ga0209067_100713142	3300027898	Watersheds	MMRSPKLAVLAVVLAALPLTGVSRPAQQRERALCCLCTCHSFDENQCAKACINMQRGTKIIEEPEMNACTKSCLRHGVRQIFFSEDGTQFVVSPTLTK
Ga0209698_1000285113	3300027911	Watersheds	MRSPKFAVLAVVLAALPMTGVSRPAAQRERALCCLCTCHSFDENQCAQVCIKMQRGTKIIEEPEMNACTKSCLRQRVRQIFFSGDGTQFVITPALTK
Ga0209698_100686992	3300027911	Watersheds	MRRSPKFAVFAVILASLPMTGVSRPAQQRERALCCLCMCHSVDERQCAQACVNMQHGTKIIDEPEMKACTKTCLRHGVRQIFFSEDGTQFTITPALTK
Ga0209698_101558621	3300027911	Watersheds	VLAVVLASLPLTGVSRPAQQRERALCCLCMCHSVDENQCAQVCVNMQHGTKIIEEPEMNSCTKSCLRHGVRQIFFSEDGTRFVITPALSK
Ga0209698_102356091	3300027911	Watersheds	MESFGTSMMRSPKLAVLAVVLAALPLTGVSRPAQQRERALCCLCTCHSFDENQCAKACINMQRGTKIIEEPEMNACTKSCLRHGVRQIFFSEDGTQFVVSPTL
Ga0209698_105909811	3300027911	Watersheds	MMRGPKFAVFAVVLASLPLTGVSRPAQQRERALCCLCMCHAVDENQCAQVCVKMQHGTKIIEEPEMNACTKSCLRQGVRQIFFSEDGTQFVITPALTK
Ga0307469_105164101	3300031720	Hardwood Forest Soil	MRKSPKFAIVAVVLAALPLTGVSRPAQQRERGLCCLCMCHSVDESQCAQVCINMQHGTKIIEEPEMNDCTKSCLRYGVRQIFFSEDGTQFVITPALTK
Ga0307468_1000508261	3300031740	Hardwood Forest Soil	MRKSPKFAIVAVVLAALPLTGVSRPAQQRERGLCCLCMCHSVDESQCAQVCINMQHGTKIIEEPEMNDCTKSCLRYGVRQIFFSEDGTPFVITPALAK
Ga0307473_102426212	3300031820	Hardwood Forest Soil	MRKSPKFAIVAVVLAALPLTGVSRPAQQRERGLCCLCMCHSVDESQCAQVCINMQHGTKIIEEPEMNACTKSCLRYGVRQIFFSEDGTQFVITPALTK
Ga0306925_109506062	3300031890	Soil	GSPKIAVLAVILAALPLTGEPRPVAEQEHALCCLCMCHSVDETRCAQACIKMQHGTKIVEEPAMNACTKTCLKHGVRQIFFSEDGTRFEITPAVAK
Ga0306923_112071721	3300031910	Soil	MKRSPKFAFLAVVVASLPLTGISRPVPPKERALCCLCMCHSVDENKCTQACVSMQHGTKIVEEPEMNACTKNCLKQGVQQIFFSEDGTRFVITPAVRK
Ga0310912_106446192	3300031941	Soil	LAVVVASLPLTGISRPVPPKERALCCLCMCHSVDENKCTQACVSMQHGTKIVEEPEMNACTKNCLKQGVQQIFFSEDGTRFVITPAVRK
Ga0306926_102203872	3300031954	Soil	PLTGISRPVPPKERALCCLCMCHSVDENKCTQACVSMQHGTKIVEEPEMNACTKNCLKQGVQQIFFSEDGTRFVITPAVRK
Ga0306926_117018071	3300031954	Soil	MKWSPKPALLAVVIASLPLTGVSRPVAQQERALCCLCTCHSVDENRCAQVCVKMQHGAKIIEEPEMNACTKSCLRHGVQQIFFSEDGTRFVITSSSSK
Ga0318533_106116851	3300032059	Soil	MQRISSLIWLLYRFETSMKWSPKPALLAVVIASLPLTGVSRPAAQQERALCCLCTCHSVDENRCAQVCVKMQHGAKIIEEPEMNACTKSCLRHGVQQIFFSEDGTRFVITSSSSK
Ga0306924_104652701	3300032076	Soil	MQRISTLIWLTYRFRTSMKRSPKFAFLAVVVASLPLTGISRPVPPKERALCCLCMCHSVDENKCTQACVSMQHGTKIVEEPEMNACTKNCLKQGVQQIFFSEDGTRFVITPAVRK
Ga0307470_101120161	3300032174	Hardwood Forest Soil	RCNEFGTLIWLMDRFATSMRKSPKFAIVAVVLAALPLTGVSRPAQQRERGLCCLCMCHSIDENQCAHACINMQHGTKIIEEPEMNACTKSCLRHGVRQIFFSEDGTQFVVSPNLTK
Ga0307471_1014118631	3300032180	Hardwood Forest Soil	ALPLTGVSRPSPQRERGLCCLCMCHSVDENQCTQACINMQHGTKIIEEPEMNACTKSCLRHGVRQIFFSEDGTQFVITPALTK
Ga0335085_1000075949	3300032770	Soil	MQRISPLIWLYQFRPLMKRSPTVAVLAVVVASLPLTGVSRPVPAQERALCCLCMCHSVDESQCSQACVKMQHGTRIVEESEMNACTRSCLKHGVRQIFFSEDGTRFAITPSVKR
Ga0335082_101255752	3300032782	Soil	MQRISSLIWLYRFQTLMKRSPTFAVLAVVVASLPLTGVSRPVPGQERALCCLCMCHSVDESRCSQACVKLQHGTRIVEESEMNACTESCLKHGVRQIFFSEDGTRFVITPSVKK
Ga0335070_100095982	3300032829	Soil	MKNSPKLALLTVLIASLPLTGVSRPSSKRGRALCCLCMCHSVDENQCAQVCLNMQYGKRIIEEPEMNACTKNCLKQGVRQIFFSEDGTRFAITPSRSK
Ga0310914_106715692	3300033289	Soil	RGRKGRNMQRISTLIWLTYRFRTSMKRSPKFALLAVVVASLPLTGISRPVPPKERALCCLCMCHSVDENKCTQACVSMQHGTKIVEEPEMNACTKNCLKQGVQQIFFSEDGTRFVITPAVRK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F105677

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences