NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F106062

Metagenome Family F106062

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F106062
Family Type Metagenome
Number of Sequences 100
Average Sequence Length 43 residues
Representative Sequence FAGFTLAFALQLRKKHGKTSVRVVIHKHTMRIDSHNNKNT
Number of Associated Samples 10
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 1.00 %
% of genes from short scaffolds (< 2000 bps) 1.00 %
Associated GOLD sequencing projects 6
AlphaFold2 3D model prediction Yes
3D model pTM-score0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (100.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut
(99.000 % of family members)
Environment Ontology (ENVO) Unclassified
(100.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Animal → Animal proximal gut
(100.000 % of family members)


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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 55.88%    β-sheet: 0.00%    Coil/Unstructured: 44.12%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.37
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF10613Lig_chan-Glu_bd 1.00


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Phylogeny

NCBI Taxonomy

NameRankTaxonomyDistribution
UnclassifiedrootN/A100.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002238|JGI20169J29049_10596869Not Available545Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Termite GutHost-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut99.00%
Termite GutHost-Associated → Insecta → Digestive System → Unclassified → Unclassified → Termite Gut1.00%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001343Nasutitermes corniger P5 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P5Host-AssociatedOpen in IMG/M
3300001345Nasutitermes corniger P4 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P4Host-AssociatedOpen in IMG/M
3300001542Nasutitermes corniger crop gut microbial community from laboratory colony in Florida, USA - Nc150CHost-AssociatedOpen in IMG/M
3300002238Nasutitermes corniger P1 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P1Host-AssociatedOpen in IMG/M
3300002308Nasutitermes corniger P4 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P4Host-AssociatedOpen in IMG/M
3300005200Nasutitermes gut metagenomeHost-AssociatedOpen in IMG/M
3300027539Nasutitermes corniger midgut segment microbial community from laboratory colony in Florida, USA - Nc150M (SPAdes)Host-AssociatedOpen in IMG/M
3300027670Nasutitermes corniger crop gut microbial community from laboratory colony in Florida, USA - Nc150C (SPAdes)Host-AssociatedOpen in IMG/M
3300027966Nasutitermes corniger P5 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P5 (SPAdes)Host-AssociatedOpen in IMG/M
3300028325Nasutitermes corniger P1 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P1 (SPAdes)Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI20172J14457_1007401813300001343Termite GutVFAGFTLAFALQLRKKHGKTSVRVVIHKQAMRIHIHNNKNT*
JGI20172J14457_1007615313300001343Termite GutVGPVFADVTLEFALQLRKKHGKTSVRVDIHKHTIRIRRHNYRVLTL*
JGI20171J14444_103483813300001345Termite GutECGPCPDFAGFTLAFALQLRKKQGKTSVRVVIHKHTMRINIHNNKNT*
JGI20167J15610_1003508723300001542Termite GutGPCPVFAGFTLAFALQLRKKHGKTSVMVVIHKQTMRIHSHNNKNT*
JGI20167J15610_1007671623300001542Termite GutGPCPVFAGFTLAFALQLRKKHGKPSVMVAIHKHTIRIHSHNNKNT*
JGI20167J15610_1008492313300001542Termite GutTLAFALQLRKKHGKISVRVVIHKHTIRIHRHNNKNT*
JGI20169J29049_1054576723300002238Termite GutPVFAGFTLAFALQLRKKHGKTSVRVAIHKHTIKIHNHNNKST*
JGI20169J29049_1059686933300002238Termite GutVFAGFTLAFALQLRKKHGKTSVRVDIHKHTIRIQSHNNKRHKLQY*
JGI20169J29049_1059695913300002238Termite GutAGFTLAFALQLRKKHGQTSVRVAIHKHTIRIHRHNNKNT*
JGI20169J29049_1059992513300002238Termite GutVFAGFTLAFALQLRKKHGKTSVRVAIHKHTIRTHTHGNKNT*
JGI20169J29049_1061354813300002238Termite GutGYTLAFALQLRKKHGKTSVRVVIHKHTIRIHSLNNKNT*
JGI20169J29049_1064716213300002238Termite GutLAFALQLRKKHGKTSVRVVIHKHTMRIPGHNKKNT*
JGI20169J29049_1070783113300002238Termite GutAGFTLAFASQLRENHRKASVRVAIHKHTIRIHSHNNKNT*
JGI20169J29049_1071071123300002238Termite GutFAGFTLAFALQLRKKHGKPSVRVVIHKHTVRIYGHTIKIHKLHY*
JGI20169J29049_1073583313300002238Termite GutFAGFTLAFALQLRKKHGKTSVRVAIHKHTMRMHSHNNKNT*
JGI20169J29049_1074269423300002238Termite GutVCGQCPVFASFTLAFALQLRKKHGKTSVRVVIHKHTMRIHRHNNKNT
JGI20169J29049_1075757313300002238Termite GutEECGPCPVFAGFTLAFALQLREKHGKTSVRVARHKHTLRIHRHNNKNI*
JGI20169J29049_1076859623300002238Termite GutFTLAFALQLRKKHGKTSVRVVIHKHTVRIHSHNNKNT*
JGI20169J29049_1079111223300002238Termite GutFAGFTLAFALQLRKKHGKTSVRVAIHKHTIRINRHNNKNI*
JGI20169J29049_1079261023300002238Termite GutGPCPVFAGFTLAFALQLRKKHGKTSVRVVIHKYTVRIHSHMI*
JGI20169J29049_1080435613300002238Termite GutPVFAGFTLAFALQLRKKHGKTSVRVVIHKYTMKIHNHNNKN*
JGI20169J29049_1081032513300002238Termite GutPVFAGFTLAFALQPRKKHGKTSVRVAIHKHTMRIHSHNNTNT*
JGI20169J29049_1083019323300002238Termite GutLPCPVFAGFTLAFALQLRKKHGNTTVRVAILKHTIRIHRH
JGI20169J29049_1085312523300002238Termite GutTLAFALQLRKKHGKTSVRVAIHKHTMRIHSHKNKNT*
JGI20169J29049_1086561433300002238Termite GutPCPVFAGFTLAFALQLRKKHGKTSVRVAIHKHAIRIRGHNNKNT*
JGI20169J29049_1086607613300002238Termite GutCPVFADFTLAFALQLRKKHGKTSVRVVIHKHTMGIHSHNNKNI*
JGI20169J29049_1090518013300002238Termite GutGFTLAFALQLRKKHGKTPVRVVIHKHTVRIHSHNNKNT*
JGI20169J29049_1091030413300002238Termite GutAGFTLAFALQLRKKHGKTSVRVAIHKHTIRIHRHKNKNT*
JGI20169J29049_1092171413300002238Termite GutAGFTLAFALQLRKKHGKTSVRVVIHKHAMKIHSHNNKNT*
JGI20169J29049_1094942023300002238Termite GutRKSAGRAVFAGFTLAFALQLRKKHGKTSVMVVIHKQTMRIHSHNNKNT*
JGI20169J29049_1095787123300002238Termite GutEECGPCPVFAGFTLAFALQLRKKHGKTSFRVVIHKHTMRTHGHNNKKT*
JGI20169J29049_1096539313300002238Termite GutGFTLTFALQLRKKHGKTSVRVAIHKHTIRIHRHDNKNT*
JGI20169J29049_1103578813300002238Termite GutAGFTLAFALQLRKKHGKTSVRVVIHKHTMRIHSHNNINT*
JGI20169J29049_1104740713300002238Termite GutEECGPCPVFAGFTLAFALQLRKKHGKTSVRVDVHKHTMRIHSHNNKNT*
JGI20169J29049_1106586723300002238Termite GutAGFTLAFALQLRKKHGKTSVSVVIHKHTMRIHSHNNKST*
JGI20169J29049_1107330823300002238Termite GutMRGPCPVFAGFTLAFALQLRKKNGKTSVSLTIRKDAIRMLSHNNKNT*
JGI20169J29049_1110953613300002238Termite GutVPCPVFAGFTLAIALQLRKKHGKTPVRVAIHKHTIRIHSHIIKIHK
JGI20169J29049_1124723833300002238Termite GutFAGFTLAFALQLRKKHGKTSVRVVIHKHTMRIDSHNNKNT*
JGI20169J29049_1131459613300002238Termite GutECGPCPVFAGFTLAFALQLRKKHGKTSVRVVRNKHTMRIHSHNNKNNFHLKET*
JGI20171J29575_1161113013300002308Termite GutFAGFTLAFALQLRKKRGRTSVRVALHRHTIRIHSHNNKNT*
JGI20171J29575_1161252413300002308Termite GutFAGFTLAFALQLRKKHGKTSVRLVIHKHTVRIHSHNDKNT*
JGI20171J29575_1162670613300002308Termite GutEECGPCPVFAGFTLAFALQLRKKHRKTSVMVVIHKYTTRYYFF*
JGI20171J29575_1166236113300002308Termite GutIFAGFTLAFALQLRKKHGKTSVRVAIHKYKIGIHNHNNKNT*
JGI20171J29575_1175710123300002308Termite GutVFAGFTLAFALQLRKKHGKTSVRVVIRKHKMRIHSHNNTNT*
JGI20171J29575_1177590113300002308Termite GutFAGFTLAFALQLRKKHGKTSVRVVIHKHKMRIYSHTIKI*
JGI20171J29575_1178552823300002308Termite GutFAGFTLAFALQLRKKHGKPSVRVAIRKHTIRIHSRNNKNT*
JGI20171J29575_1179453823300002308Termite GutVFAGFTLAFALQLRKKHGKTSVRVAIHKHIMRIHSDRRKISV*
JGI20171J29575_1180371723300002308Termite GutPVFAGFTLAFALQLRKKHGKTSVREVIHKYTMRIHSHNKEINR*
JGI20171J29575_1186421623300002308Termite GutPVFAGFTLAFALQLRKKHGKTSVRVVIHKYTMRIHSHNNTST*
JGI20171J29575_1188142013300002308Termite GutPVFAGFTLAFALQLRKKHGKTSVRVAIHKRTIRIYSHNNKNK*
JGI20171J29575_1194040213300002308Termite GutCGPCPVFAGFTLAFALKLRKKHGKPSVRVAIHKHTIRIHSHNNKNA*
JGI20171J29575_1195378713300002308Termite GutPVFAGFTLAFALQLRKKHGKTSVRVAIHKRTIRMHSHNNKNT*
JGI20171J29575_1197076623300002308Termite GutEECGPCPVFAGFTLVFALQLRKKHGKTSVRVVIHKHTVRIHSHTMTNQ*
JGI20171J29575_1205714013300002308Termite GutFAGFTLAFALQPRKKHGKTSVRVAIHKHTMRIHSHNNTNT*
JGI20171J29575_1208739123300002308Termite GutAGRAVFAGFTLAFALQLRKKHGKTSVMVVIHKQTMRIHSHNNKNT*
JGI20171J29575_1209735523300002308Termite GutAGFTLAFALQLRKKHGKTSVRVIIHKHTMIIHSHKNKNT*
JGI20171J29575_1210117833300002308Termite GutFAGFTLAFALQLRKKHGKTSVRVVIHKHTIRIHSHNIKNT*
JGI20171J29575_1212128913300002308Termite GutECGPCPVFAGFTLAFALQLRKTHGKTSVRAVIHKHTMIMYSHNNKNT*
JGI20171J29575_1212432233300002308Termite GutEECGPCPVFAGFTLAFALQLRKKHGKTSVRVVIHKHTMRIHSHNNKNT*
JGI20171J29575_1218945513300002308Termite GutEECGPCPVFAGFTLAFALQLRKKHGKTSVRVAVHKHTIRIHRRNNKNK*
JGI20171J29575_1219077323300002308Termite GutVFAGFTLAFALQLRKKHGKTSVRVAIHKHKTNIHKYKSR*
JGI20171J29575_1221758213300002308Termite GutVFAGFTLAFALQLRKKHGKTSVRVVIHKHTIRIYSHNNKDT*
JGI20171J29575_1225088313300002308Termite GutEECGPCPVFAGFTLASALQLRKKHGKTSVKVPIHKDTMRIQGHINKNT*
JGI20171J29575_1225790013300002308Termite GutNLEECGPCPVFAGFTLAFALQLRKKQGKPSARVAIHKHAIRIHSHNNKNT*
JGI20171J29575_1231513013300002308Termite GutEECGPCPVFAGFTLAFALQLRKKHGKTSVMVVIHKNTMRIHSHNNKNT*
JGI20171J29575_1234688713300002308Termite GutGPCPVFTGFTLAFALQLRKKHGKTSVRVVMRKHTIRIHSHNNKNT*
JGI20171J29575_1236956313300002308Termite GutVFAGFTLAFALQLRKKHGKTSVRVVRHKHSMRIHSHNNKNT*
JGI20171J29575_1239078413300002308Termite GutFAGFTLAFALQLRKKHGKTSVRVVRHKHTTRIHSHNNKNT*
JGI20171J29575_1243230023300002308Termite GutECGPCPVFAGFTLAFALQLRKKQGKTSVRVVIHKHTMRI*
JGI20171J29575_1244825933300002308Termite GutVFAGFTLAFALQLRKNHGKTSVRVVIHKHKMRIHSHNNKNT*
JGI20171J29575_1251657723300002308Termite GutPVFAGFTLAFALQLRKKHGKTSVMVAIHKRAIRIHSHNNKNT*
JGI20171J29575_1253341813300002308Termite GutEECGPCPVFAGFTLALALQLRKKHGKTSVRVVIHKPTMRILNHNNKNT*
JGI20171J29575_1256707623300002308Termite GutVEECGPCPVFAGFTLAFALQLKKKHEKTSVRIAIHKHTMKIQYYNNKNT*
Ga0072940_134219813300005200Termite GutGFTLAFALQLRKKHRKTSVRVVIHKHTMRTHSHNNKYIVIT
Ga0209424_105231013300027539Termite GutKLGRVRAAPIFVGFTLAFALQLRKKQGKTSVRVVIRKHTMRLHSHNNKST
Ga0209424_110350613300027539Termite GutECGPCPVFAGVTLAFALQLRKKHRKISVRVAIHKHTIRTHRHYNKNTV
Ga0209424_113088813300027539Termite GutCPLFAGFTLAFALQLRKKHGKTSVRVAIHNHTIRIHGHNNKNTYINYSIKQE
Ga0209424_118923013300027539Termite GutLAFALQVRKKHGKTSFRVAIHKHRVRIHSHNNKKT
Ga0209423_1003401913300027670Termite GutPAFAGFTLAFALQLRKKHGKTSVKVVIHKHTMRIPGHNNKNT
Ga0209423_1007681313300027670Termite GutPCPVFAGFTLAFALQLREKHGKTSVRVVIHKHTTRIYSHKNKNT
Ga0209423_1011388513300027670Termite GutAGFTLAFASQLRKKHRKTPVRVVIHKHTMRIHSHNNKNT
Ga0209423_1012442813300027670Termite GutFALAFDLQLRIKHGKTSDRIAIHKHTMRIHRNNNKST
Ga0209423_1016824513300027670Termite GutEECGPCPVFAGFTLAFALQLRKKHGKTSVRVAMHKHTIRIHSHNNKYA
Ga0209423_1022408513300027670Termite GutCPVFVGFTLAFALKLRKKHGKTSDSVVIHKHTMRTHSHNNKNT
Ga0209423_1023546113300027670Termite GutVFAGFTLTFALQLRKKDGKTSVRVAIHKHTMRIHSHNNKNI
Ga0209423_1051375513300027670Termite GutFAGFTLAFALKLRKKHGKTSVMVVRHKHTMRIHSHNNKNT
Ga0209423_1053208113300027670Termite GutYPVFAGFTLVFALQLRKKHGKTSVRVAIHKHTLRIHSHNNKNT
Ga0209423_1057123013300027670Termite GutFTLAFALKLRKKHGKTSVRVAIHKHTMRIHSQNNKNT
Ga0209423_1058718313300027670Termite GutTLAFALQLRKKHGKTSLSVAIHKHKIRIHRHNNKNI
Ga0209423_1059572713300027670Termite GutEECGPRPVFAGFTLEFALQLRKKQGKTSVRVAIHKHTIRIHIHNKNT
Ga0209738_1008670113300027966Termite GutAFALQLRKKHGKTSVRVAIHKHTIRIHSHNNKIHKLHY
Ga0209738_1024843713300027966Termite GutAGFTLAFALQLRKKHGKTSVRVAIHTITIVSNNIKQNILKE
Ga0209738_1026306513300027966Termite GutTLAFALQLRKKHGKTSVKVVIHKHTIRINSHNNKNT
Ga0209738_1029288013300027966Termite GutFTLAFAVQLREKHRKTSVRVAVHKHTIRVHSYNNKNI
Ga0209738_1037993413300027966Termite GutEECGLCPVFAGFTLAFALQLRKKHGKTSVRVVIHKHAMKIHSHNNKNT
Ga0209738_1054142513300027966Termite GutGFTLAFALQLRKKQGKTSVRVATHKHTIRIHRHKQ
Ga0209738_1061332913300027966Termite GutPVFAGFTLAFALQLRKKHGKPPIRGDIHKHTVRIHSHNNKNK
Ga0268261_1061557323300028325Termite GutEECRPCPIFAGFTLAFALQLRKKHRKTSVRVVIHKHTMRIHSHNNKNT
Ga0268261_1064160613300028325Termite GutEECGPCPVFAGFTLAFALQLRKKHGKTSVRVAIHKHTIRIHSHNNKNT
Ga0268261_1067701413300028325Termite GutAGFTLAFALQLRKKHGKTSVRVAIHKHTIRIHRHNNKNI

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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