NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F106099

Metagenome Family F106099

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F106099
Family Type Metagenome
Number of Sequences 100
Average Sequence Length 43 residues
Representative Sequence GYGDVDITGNTSYSAVNKTNSASYSDVDVSGNTSYTDVTHVA
Number of Associated Samples 86
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 100.00 %
% of genes from short scaffolds (< 2000 bps) 91.00 %
Associated GOLD sequencing projects 75
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (78.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(45.000 % of family members)
Environment Ontology (ENVO) Unclassified
(90.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(89.000 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 30.95%    Coil/Unstructured: 69.05%
Feature Viewer
Powered by Feature Viewer

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF13884Peptidase_S74 2.00
PF137592OG-FeII_Oxy_5 1.00
PF07880T4_gp9_10 1.00


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A78.00 %
All OrganismsrootAll Organisms22.00 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000101|DelMOSum2010_c10141974Not Available899Open in IMG/M
3300000115|DelMOSum2011_c10135462Not Available750Open in IMG/M
3300000116|DelMOSpr2010_c10084169Not Available1249Open in IMG/M
3300000947|BBAY92_10134287All Organisms → cellular organisms → Bacteria653Open in IMG/M
3300000949|BBAY94_10131150Not Available683Open in IMG/M
3300000973|BBAY93_10081626Not Available828Open in IMG/M
3300001354|JGI20155J14468_10115197Not Available916Open in IMG/M
3300001450|JGI24006J15134_10079987Not Available1226Open in IMG/M
3300001460|JGI24003J15210_10038568Not Available1679Open in IMG/M
3300002482|JGI25127J35165_1106054Not Available563Open in IMG/M
3300002483|JGI25132J35274_1041691All Organisms → cellular organisms → Bacteria1013Open in IMG/M
3300002518|JGI25134J35505_10060141All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium922Open in IMG/M
3300005427|Ga0066851_10144962Not Available758Open in IMG/M
3300005520|Ga0066864_10214732Not Available546Open in IMG/M
3300006029|Ga0075466_1109191Not Available743Open in IMG/M
3300006735|Ga0098038_1078420Not Available1160Open in IMG/M
3300006738|Ga0098035_1132213Not Available855Open in IMG/M
3300006738|Ga0098035_1151786Not Available787Open in IMG/M
3300006751|Ga0098040_1256183Not Available506Open in IMG/M
3300006754|Ga0098044_1336791Not Available573Open in IMG/M
3300006793|Ga0098055_1184449Not Available796Open in IMG/M
3300006803|Ga0075467_10717397Not Available509Open in IMG/M
3300006867|Ga0075476_10306932Not Available556Open in IMG/M
3300006919|Ga0070746_10130949Not Available1232Open in IMG/M
3300006919|Ga0070746_10154054Not Available1118Open in IMG/M
3300006919|Ga0070746_10293225Not Available749Open in IMG/M
3300006921|Ga0098060_1132280Not Available696Open in IMG/M
3300006929|Ga0098036_1119062Not Available809Open in IMG/M
3300006990|Ga0098046_1081561Not Available728Open in IMG/M
3300007276|Ga0070747_1271713Not Available586Open in IMG/M
3300007538|Ga0099851_1256758Not Available624Open in IMG/M
3300008050|Ga0098052_1043742Not Available1962Open in IMG/M
3300008050|Ga0098052_1236693All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium701Open in IMG/M
3300008220|Ga0114910_1076580Not Available1026Open in IMG/M
3300009071|Ga0115566_10022955All Organisms → cellular organisms → Bacteria4535Open in IMG/M
3300009071|Ga0115566_10769087All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium531Open in IMG/M
3300009077|Ga0115552_1440691All Organisms → cellular organisms → Bacteria512Open in IMG/M
3300009445|Ga0115553_1342684All Organisms → cellular organisms → Bacteria572Open in IMG/M
3300009497|Ga0115569_10383239Not Available608Open in IMG/M
3300009593|Ga0115011_10637204All Organisms → cellular organisms → Bacteria864Open in IMG/M
3300009593|Ga0115011_11726831All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium562Open in IMG/M
3300009620|Ga0114912_1075955Not Available825Open in IMG/M
3300009706|Ga0115002_11045617Not Available558Open in IMG/M
3300009785|Ga0115001_10942360Not Available518Open in IMG/M
3300010148|Ga0098043_1015890Not Available2441Open in IMG/M
3300010149|Ga0098049_1200726Not Available611Open in IMG/M
3300010149|Ga0098049_1257737Not Available529Open in IMG/M
3300010151|Ga0098061_1169482Not Available784Open in IMG/M
3300010430|Ga0118733_102733262Not Available973Open in IMG/M
3300012919|Ga0160422_10167442Not Available1321Open in IMG/M
3300012920|Ga0160423_10489985Not Available836Open in IMG/M
3300017706|Ga0181377_1044540Not Available868Open in IMG/M
3300017710|Ga0181403_1115058Not Available562Open in IMG/M
3300017732|Ga0181415_1044572All Organisms → cellular organisms → Bacteria1013Open in IMG/M
3300017735|Ga0181431_1127531Not Available566Open in IMG/M
3300017737|Ga0187218_1035201Not Available1275Open in IMG/M
3300017738|Ga0181428_1112004All Organisms → cellular organisms → Bacteria639Open in IMG/M
3300017740|Ga0181418_1154977Not Available549Open in IMG/M
3300017749|Ga0181392_1104882All Organisms → cellular organisms → Bacteria843Open in IMG/M
3300017757|Ga0181420_1102248All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter881Open in IMG/M
3300017776|Ga0181394_1012082Not Available3245Open in IMG/M
3300017779|Ga0181395_1101567All Organisms → cellular organisms → Bacteria921Open in IMG/M
3300020462|Ga0211546_10337371Not Available755Open in IMG/M
3300021959|Ga0222716_10669079Not Available556Open in IMG/M
3300022164|Ga0212022_1068249Not Available547Open in IMG/M
3300022178|Ga0196887_1002460All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria7431Open in IMG/M
3300022183|Ga0196891_1024773Not Available1138Open in IMG/M
3300022885|Ga0222662_1012674Not Available2132Open in IMG/M
(restricted) 3300023210|Ga0233412_10572793Not Available513Open in IMG/M
3300023240|Ga0222676_1061044Not Available521Open in IMG/M
(restricted) 3300024059|Ga0255040_10134699Not Available985Open in IMG/M
3300025039|Ga0207878_107931Not Available1336Open in IMG/M
3300025070|Ga0208667_1014383Not Available1693Open in IMG/M
3300025082|Ga0208156_1047927Not Available865Open in IMG/M
3300025086|Ga0208157_1045004Not Available1209Open in IMG/M
3300025099|Ga0208669_1131782Not Available500Open in IMG/M
3300025108|Ga0208793_1030291Not Available1808Open in IMG/M
3300025108|Ga0208793_1033453All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium1692Open in IMG/M
3300025110|Ga0208158_1054044All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium984Open in IMG/M
3300025110|Ga0208158_1114741Not Available628Open in IMG/M
3300025118|Ga0208790_1180659Not Available566Open in IMG/M
3300025120|Ga0209535_1043828Not Available1971Open in IMG/M
3300025120|Ga0209535_1179458Not Available626Open in IMG/M
3300025122|Ga0209434_1200150Not Available518Open in IMG/M
3300025131|Ga0209128_1067684Not Available1238Open in IMG/M
3300025133|Ga0208299_1008761All Organisms → cellular organisms → Bacteria5243Open in IMG/M
3300025133|Ga0208299_1018829All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria3119Open in IMG/M
3300025133|Ga0208299_1071739Not Available1242Open in IMG/M
3300025141|Ga0209756_1126565Not Available1060Open in IMG/M
3300025274|Ga0208183_1092635All Organisms → cellular organisms → Bacteria558Open in IMG/M
3300025570|Ga0208660_1077233Not Available768Open in IMG/M
3300025632|Ga0209194_1002414Not Available10009Open in IMG/M
3300025652|Ga0208134_1008594All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured phage MedDCM-OCT-S09-C54452Open in IMG/M
3300025652|Ga0208134_1052357Not Available1289Open in IMG/M
3300025652|Ga0208134_1054167Not Available1257Open in IMG/M
3300025671|Ga0208898_1090114Not Available961Open in IMG/M
3300025818|Ga0208542_1105437Not Available806Open in IMG/M
3300032073|Ga0315315_11414549Not Available606Open in IMG/M
3300033742|Ga0314858_111019Not Available698Open in IMG/M
3300034375|Ga0348336_083633Not Available1144Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine45.00%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous18.00%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater11.00%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine6.00%
Deep OceanEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean3.00%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine3.00%
Macroalgal SurfaceHost-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface3.00%
Saline WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water2.00%
Surface SeawaterEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater1.00%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater1.00%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater1.00%
Marine SedimentEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment1.00%
Sea-Ice BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine1.00%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater1.00%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine1.00%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water1.00%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine1.00%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000101Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010EnvironmentalOpen in IMG/M
3300000115Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011EnvironmentalOpen in IMG/M
3300000116Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010EnvironmentalOpen in IMG/M
3300000947Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY92Host-AssociatedOpen in IMG/M
3300000949Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY94Host-AssociatedOpen in IMG/M
3300000973Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY93Host-AssociatedOpen in IMG/M
3300001354Pelagic Microbial community sample from North Sea - COGITO 998_met_05EnvironmentalOpen in IMG/M
3300001450Marine viral communities from the Pacific Ocean - LP-53EnvironmentalOpen in IMG/M
3300001460Marine viral communities from the Pacific Ocean - LP-28EnvironmentalOpen in IMG/M
3300002482Marine viral communities from the Pacific Ocean - ETNP_2_30EnvironmentalOpen in IMG/M
3300002483Marine viral communities from the Pacific Ocean - ETNP_6_30EnvironmentalOpen in IMG/M
3300002518Marine viral communities from the Pacific Ocean - ETNP_6_100EnvironmentalOpen in IMG/M
3300005427Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV65EnvironmentalOpen in IMG/M
3300005520Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV251EnvironmentalOpen in IMG/M
3300006029Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNAEnvironmentalOpen in IMG/M
3300006735Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaGEnvironmentalOpen in IMG/M
3300006738Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaGEnvironmentalOpen in IMG/M
3300006751Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaGEnvironmentalOpen in IMG/M
3300006754Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaGEnvironmentalOpen in IMG/M
3300006793Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaGEnvironmentalOpen in IMG/M
3300006803Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_DNAEnvironmentalOpen in IMG/M
3300006867Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_DNAEnvironmentalOpen in IMG/M
3300006919Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21EnvironmentalOpen in IMG/M
3300006921Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaGEnvironmentalOpen in IMG/M
3300006929Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaGEnvironmentalOpen in IMG/M
3300006990Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaGEnvironmentalOpen in IMG/M
3300007276Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31EnvironmentalOpen in IMG/M
3300007538Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaGEnvironmentalOpen in IMG/M
3300008050Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaGEnvironmentalOpen in IMG/M
3300008220Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_908EnvironmentalOpen in IMG/M
3300009071Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405EnvironmentalOpen in IMG/M
3300009077Pelagic marine microbial communities from North Sea - COGITO_mtgs_110328EnvironmentalOpen in IMG/M
3300009445Pelagic marine microbial communities from North Sea - COGITO_mtgs_110331EnvironmentalOpen in IMG/M
3300009497Pelagic marine microbial communities from North Sea - COGITO_mtgs_120503EnvironmentalOpen in IMG/M
3300009593Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 MetagenomeEnvironmentalOpen in IMG/M
3300009620Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_51EnvironmentalOpen in IMG/M
3300009706Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86EnvironmentalOpen in IMG/M
3300009785Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130EnvironmentalOpen in IMG/M
3300010148Marine viral communities from the Subarctic Pacific Ocean - 9B_ETSP_OMZ_AT15188_CsCl metaGEnvironmentalOpen in IMG/M
3300010149Marine viral communities from the Subarctic Pacific Ocean - 13B_ETSP_OMZ_AT15268_CsCl metaGEnvironmentalOpen in IMG/M
3300010151Marine viral communities from the Subarctic Pacific Ocean - 22_ETSP_OMZ_AT15343 metaGEnvironmentalOpen in IMG/M
3300010430Marine sediment microbial communities from Gulf of Thailand under amendment with organic carbon and nitrate - JGI co-assembly of 8 samplesEnvironmentalOpen in IMG/M
3300012919Marine microbial communities from the Central Pacific Ocean - Fk160115 60m metaGEnvironmentalOpen in IMG/M
3300012920Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaGEnvironmentalOpen in IMG/M
3300017706Marine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaGEnvironmentalOpen in IMG/M
3300017710Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 26 SPOT_SRF_2011-09-28EnvironmentalOpen in IMG/M
3300017732Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 38 SPOT_SRF_2012-12-11EnvironmentalOpen in IMG/M
3300017735Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 54 SPOT_SRF_2014-05-21EnvironmentalOpen in IMG/M
3300017737Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11 (version 2)EnvironmentalOpen in IMG/M
3300017738Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 51 SPOT_SRF_2014-02-12EnvironmentalOpen in IMG/M
3300017740Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 41 SPOT_SRF_2013-03-13EnvironmentalOpen in IMG/M
3300017749Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15EnvironmentalOpen in IMG/M
3300017757Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 43 SPOT_SRF_2013-05-22EnvironmentalOpen in IMG/M
3300017776Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 17 SPOT_SRF_2010-11-23EnvironmentalOpen in IMG/M
3300017779Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 18 SPOT_SRF_2010-12-16EnvironmentalOpen in IMG/M
3300020462Marine microbial communities from Tara Oceans - TARA_B100001559 (ERX556040-ERR598986)EnvironmentalOpen in IMG/M
3300021959Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13DEnvironmentalOpen in IMG/M
3300022164Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v2)EnvironmentalOpen in IMG/M
3300022178Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v3)EnvironmentalOpen in IMG/M
3300022183Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v3)EnvironmentalOpen in IMG/M
3300022885Saline water microbial communities from Ace Lake, Antarctica - #600EnvironmentalOpen in IMG/M
3300023210 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_4_MGEnvironmentalOpen in IMG/M
3300023240Saline water microbial communities from Ace Lake, Antarctica - #870EnvironmentalOpen in IMG/M
3300024059 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_2EnvironmentalOpen in IMG/M
3300025039Marine viral communities from the Pacific Ocean - LP-41 (SPAdes)EnvironmentalOpen in IMG/M
3300025070Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025082Marine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025086Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025099Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025108Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025110Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025118Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025120Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)EnvironmentalOpen in IMG/M
3300025122Marine viral communities from the Pacific Ocean - ETNP_2_300 (SPAdes)EnvironmentalOpen in IMG/M
3300025131Marine viral communities from the Pacific Ocean - ETNP_6_100 (SPAdes)EnvironmentalOpen in IMG/M
3300025133Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025141Marine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)EnvironmentalOpen in IMG/M
3300025274Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_51 (SPAdes)EnvironmentalOpen in IMG/M
3300025570Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025632Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413 (SPAdes)EnvironmentalOpen in IMG/M
3300025652Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (SPAdes)EnvironmentalOpen in IMG/M
3300025671Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (SPAdes)EnvironmentalOpen in IMG/M
3300025818Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300032073Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416EnvironmentalOpen in IMG/M
3300033742Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - 2018 seawaterEnvironmentalOpen in IMG/M
3300034375Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v4)EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2010_1014197413300000101MarineGYQDVDIVGNTSYTAVNKTNSASYSDVDVVGETSYTDVTHVA*
DelMOSum2011_1013546223300000115MarineGNVTPLGYGDVDITGNTSYSAVNKTNSASYSDVDVTAETSYTDVTHVA*
DelMOSpr2010_1008416913300000116MarineVDITGNTSYSAVNKTNSASYSDVDVTAETSYTDVTHVA*
BBAY92_1013428713300000947Macroalgal SurfacePLGYGDIDITGNTSYSAVNKTNSASYSDVDVTAETSYTDVTHVA*
BBAY94_1013115013300000949Macroalgal SurfaceAPLGYGDIDITGNTSYSAVNKTNSASYSDVDVSGETSYTDVTHVA*
BBAY93_1008162613300000973Macroalgal SurfaceGNTSYSNVNKTNSASYSDVDVSGNTSYTDVTHVA*
JGI20155J14468_1011519723300001354Pelagic MarinePLGYGDVDITGNTSYSAVNKTNSASYSDVDVTAETSYTDVTHVA*
JGI24006J15134_1007998713300001450MarineAVLAYQDVDIIGNTSYNAVDKTNSASYSNIDITGNTSYTDVTHVA*
JGI24003J15210_1003856813300001460MarineCDIEGNTSYSAVNKTDSASYSDVDVTGNTSYTDVTHAA*
JGI25127J35165_110605413300002482MarineQDIDITGNTSYTDVNKTNSASYSDVDVTGNTSYTDVTHVV*
JGI25132J35274_104169123300002483MarineAPLGYGDVDITGNTSYSAVNKTNSASYSDVDVTAETSYTDVTHVA*
JGI25134J35505_1006014123300002518MarineVSLGNPAALGYGDVDIDGNTSYTDVTKNNSGSYSNVDIAGNTSYTDVNHAA*
Ga0066851_1014496223300005427MarineTSSLGLVSPIAYKDIDIGGNTSYSSVTHDTSASYSNVDVVGNTSYTDVDHVA*
Ga0066864_1021473223300005520MarineGNTSYSSVTHDTSASYSNVDVVGNTSYTDVDHVA*
Ga0075466_110919113300006029AqueousYGDVDITGNTSYSAVNKTNSASYSDVDVTAETSYTDVTHVA*
Ga0098038_107842033300006735MarineLGYQDIDIIGNTSYTAVNKTNGASYSDVDVVGNTSYTDITHVV*
Ga0098035_113221313300006738MarineIDIGGNTSYSSVTHDTSASYSNVDVVGNTSYTDVDHVA*
Ga0098035_115178623300006738MarineLGLVSPIAYKDIDIGGNTSYSSVTHDTSASYSNVDVVGNTSYTDVDHVA*
Ga0098040_125618313300006751MarineVDISGNTSYSDINKTNSASYSDVDVTAETSYTDVTHVA*
Ga0098044_133679113300006754MarineDITGNTSYSDVNKTNSASYSDVDVTHETSYTDVTHAA*
Ga0098055_118444923300006793MarineGYGDVDITGNTSYSAVNKTNSASYSDVDVTGNTSYTDVTHAS*
Ga0075467_1071739713300006803AqueousPLGYGDVDITGNTSYSAVNKTNSASYSDVDVVGETSYTDVTHVA*
Ga0075476_1030693223300006867AqueousIDIIGNTSYSAVNKTNGASYSDVDVVGNTSYTDVTRVV*
Ga0070746_1013094913300006919AqueousDIDIIGNTSYSAVNKTNGASYSDVDVVGNTSYTDITRVV*
Ga0070746_1015405423300006919AqueousISVGNVSPLSYQDVDIGGNTSYSAVNKTDSASYSGVDVTGNTSYTDVTHAA*
Ga0070746_1029322513300006919AqueousGYGDVDITGNTSYSAVNKTNSASYSDVDVTAETSYTDVTHVA*
Ga0098060_113228013300006921MarineLGYQDIDIIGNTSYTAVNKTNGASYSDVDVVGNTSYTDVTHVV*
Ga0098036_111906213300006929MarineDVDITGNTSYSDVNKTNSASYSDVDVSGETSYTDVTHVA*
Ga0098046_108156113300006990MarineITGNTSYSDVNKTNSASYSGVDVTGNTSYTDVTHVA*
Ga0070747_127171323300007276AqueousTGIQADISVGNVSPLSYQDVDIGGNTSYSAVNKTDSASYSGVDVTGNTSYTDVTHAA*
Ga0099851_125675823300007538AqueousLGYQDVDITGNTSYTTINKTNSASYSNVDVTGNTSYTDVTHAA*
Ga0098052_104374213300008050MarineAYKDIDIGGNTSYSSVTHDTSASYSNVDVVGNTSYTDVDHVA*
Ga0098052_123669313300008050MarineDVDIDGNTSYTDINKTNSASYSDVDVSGNTSYTDVDHAA*
Ga0114910_107658023300008220Deep OceanYQDVDIGGNTSYSAVNKTDSASYSGVDVTGNTSYTDVTHAA*
Ga0115566_1002295573300009071Pelagic MarineAALSYQDIDITGNTSYSNVNKTNSASYSDVDVSGNTSYTDVTHVA*
Ga0115566_1076908713300009071Pelagic MarineDITGNTSYSDVNKTNSASYSDVDVTAETSYTDVTHVA*
Ga0115552_144069113300009077Pelagic MarineTGNTSYSAVNKTNSASYSDVDVTAETSYTDVTHVA*
Ga0115553_134268413300009445Pelagic MarineLGYGDVDITGNTSYSAVNKTNSASYSDVDVTAETSYTDVTHVA*
Ga0115569_1038323923300009497Pelagic MarineAPLGYQDVDITGNTSYTTINKTNSASYSNVDVTGNTSYTDVTHAA*
Ga0115011_1063720423300009593MarineGYGDVDITGNTSYSAVNKTNSASYSDVDVSGNTSYTDVTHVA*
Ga0115011_1172683123300009593MarineAVGNVAPLGYGDVDIDGNTSYTDVTKNNTGSYSNVDISGNTSYTDVDHAA*
Ga0114912_107595523300009620Deep OceanSPLSYQDVDIGGNTSYSAVNKTDSASYSGVDVTGNTSYTDVTHAA*
Ga0115002_1104561713300009706MarineSSVGQISPLGYENVDITGNTSYTAVNKTNSASYSDVDITGNTNYTDVTHVA*
Ga0115001_1094236013300009785MarineAYQDVDIIGNTSYNAVDKTNSASYNNVDITGNTSYTDVTHAA*
Ga0098043_101589013300010148MarineDIDIIGNTSYTAVNKTNGASYSDVDVVGNTSYTDITHVV*
Ga0098049_120072613300010149MarineLVSPIAYKDIDIGGNTSYSSVTHDTSASYSNVDVVGNTSYTDVDHVA*
Ga0098049_125773723300010149MarineGDVDITGNTSYSDVNKTNSASYSDVDVTGETSYTDVTHAA*
Ga0098061_116948213300010151MarineGLVSPIAYKDIDIGGNTSYSSVTHDTSASYSNVDVVGNTSYTDVDHVA*
Ga0118733_10273326213300010430Marine SedimentQATIFVGNVAPLGYQDVDITGNTSYTTINKTNSASYSNVDVTGNTSYTDVTHAA*
Ga0160422_1016744233300012919SeawaterDIIGNTSYSNVNKTNSASYSDVDVSHETSYTDVTHVA*
Ga0160423_1048998513300012920Surface SeawaterDVDIIGNTSYSNVNKTNSASYSDVDVSHETSYTDVTHVA*
Ga0181377_104454013300017706MarineYQDIDIIGNTSYSAVNKTNGASYSDVDVVGNTSYTDVTHVV
Ga0181403_111505813300017710SeawaterYGDVDITGNTSYSAVNKTNSASYSDVDVTAETSYTDITHVA
Ga0181415_104457213300017732SeawaterGNVAPLGYGDVDITGNTSYNAVNKTNSASYSDVDVAGNTSYTDVTHVA
Ga0181431_112753123300017735SeawaterVIVLGYQDIDIIGNTSYSAVNKTNGASYSDVDVVGNTSYTDVTRVV
Ga0187218_103520113300017737SeawaterLAPLGYGDVDITGNTSYSAVNKTNSASYSDVDVTAETSYTDVTHVA
Ga0181428_111200423300017738SeawaterGIRAYQNVVIDGNTSYSSVSKNNNANYSDVDNTAETSYTDVTAA
Ga0181418_115497723300017740SeawaterEINVLGYQDIDITGNTSYTDVNKTNSASYSDVDVTGNTSYTDVTHVV
Ga0181392_110488223300017749SeawaterPLGYGNVDITGNTSYSAVNKTNSASYSDVDVTAETSYTDVTHVA
Ga0181420_110224813300017757SeawaterYQNINIIGNTSYSAVNKTNSASYSNVDVTGNTSYTDVTHAA
Ga0181394_101208213300017776SeawaterDISVGNVSPLSYQDVDIEGNTSYSAVNKTDSASYSDVDVTGNTSYTDVTHAA
Ga0181395_110156713300017779SeawaterGDVDITGNTSYSAVNKTNSASYSDVDVTAETSYTDVTHVA
Ga0211546_1033737123300020462MarineVDITGNTSYSDVNKTNSASYSDVDVTHETSYTDVTHAA
Ga0222716_1066907923300021959Estuarine WaterDVDITGNTSYSAVNKTNSASYSDVDVTAETSYTDVTHVA
Ga0212022_106824923300022164AqueousTGNTSYSAVNKTNSASYSDVDVTAETSYTDVTHVA
Ga0196887_100246073300022178AqueousLGYGDVDITGNTSYSAVNKTNSASYSDVDVTAETSYTDVTHVA
Ga0196891_102477323300022183AqueousVLGYADVDITGNTSYSAVNKTNSASYSDVDVTAETSYTDVTHVA
Ga0222662_101267413300022885Saline WaterEDVDITGNTSYTAVNKTNSASYSDVDITGNTNYTDVTHVA
(restricted) Ga0233412_1057279323300023210SeawaterVAPLGYGDVDITGNTSYSAVNKTNSASYSDVDVTGNTSYTDVTHVA
Ga0222676_106104413300023240Saline WaterTGNTSYTAVNKTNSASYSDVDITGNTNYTDVTHVA
(restricted) Ga0255040_1013469923300024059SeawaterDGDVDIIGNTSYSAVNKTNSASYSDVDVSHETSYTDVTHVA
Ga0207878_10793133300025039MarineTVGNVAPLGYGNVDITGNTSYSAVNKTNSASYSDVDVTGNTSYTDVTHVA
Ga0208667_101438313300025070MarineSVGNVAPLGYGDVDITGNTSYSDVNKTNSASYSDVDVTGNTSYTDVTHVA
Ga0208156_104792713300025082MarineGLVSPIAYKDIDIGGNTSYSSVTHDTSASYSNVDVVGNTSYTDVDHVA
Ga0208157_104500423300025086MarineYQNVDIEGNTSYSAVNKTDSASYSDVDVTTNTSYTDVTHAA
Ga0208669_113178213300025099MarineDIDIIGNTSYSAVNKTNSASYSDVDVVGNTSYTDVTHVV
Ga0208793_103029143300025108MarineIDIGGNTSYSSVTHDTSASYSNVDVVGNTSYTDVDHVA
Ga0208793_103345343300025108MarineTASVGNPAALGYGDVDIDGNTSYTDINKTNSASYSDVDVSGNTSYTDVDHAA
Ga0208158_105404413300025110MarineLGNPAALGYGDVDIDGNTSYTDINKTNSASYSDVDVSGNTSYTDVDHAA
Ga0208158_111474123300025110MarineTITVGNVAPLGYGDVDITGNTSYSDVNKTNSASYSDVDVTGETSYTDVTHAA
Ga0208790_118065913300025118MarineSATVTVGDPAALGYGDVDITGNTSYSAVNKTNSASYSDVDVTHETSYTDVTHAA
Ga0209535_104382813300025120MarineEVIVLGYQDIDIIGNTSYSAVNKTNGASYSDVDVVGNTSYTDVTRVV
Ga0209535_117945813300025120MarineIVGNTSYTAVNKTNSASYSDVDVEGETSYTDVTHVA
Ga0209434_120015013300025122MarineAPLGYGDVDITGNTSYSAVNKTNSASYSDVDVTGNTSYTDVTHVA
Ga0209128_106768423300025131MarineAPLGYGDVDITGNTSYSDVNKTNSASYSDVDVSGETSYTDVTHAA
Ga0208299_100876113300025133MarineIDGNTSYTDVTKNNSGSYSNVDIAGNTSYTDVNHAA
Ga0208299_101882933300025133MarineVDITGNTSYSDVNKTNSASYSDVDVSGETSYTDVTHAA
Ga0208299_107173933300025133MarineIGGNTSYSSVTHDTSASYSNVDVVGNTSYTDVDHVA
Ga0209756_112656513300025141MarinePAALGYGDIDITGNTSYSAVNKTNSASYSDVDVSGNTSYTDVTHAA
Ga0208183_109263523300025274Deep OceanSPLSYQDVDIGGNTSYSAVNKTDSASYSGVDVTGNTSYTDVTHAA
Ga0208660_107723323300025570AqueousVGELAPLGYGDVDITGNTSYSAVNKTNSASYSDVDVTAETSYTDVTHVA
Ga0209194_1002414173300025632Pelagic MarineVDITGNTSYSAVNKTNSASYSDVDVTAETSYTDVTHVA
Ga0208134_100859413300025652AqueousVAPLGYQDVDITGNTSYTTINKTNSASYSNVDVTGNTSYTDVTHAA
Ga0208134_105235723300025652AqueousPLGYGDVDITGNTSYSAVNKTNSASYSDVDVTAETSYTDVTHVA
Ga0208134_105416723300025652AqueousIQADISVGNVSPLSYQDVDIGGNTSYSAVNKTDSASYSDVDVTGNTSYTDVTHAA
Ga0208898_109011423300025671AqueousYGDVDITGNTSYSAVNKTNSASYSDVDVTAETSYTDVTHVA
Ga0208542_110543713300025818AqueousAPLGYGDVDITGNTSYSAVNKTNSASYSDVDVTAETSYTDVTHVA
Ga0315315_1141454923300032073SeawaterIDIDGNTSYSNVNKTNSASYSDVDVSGNTSYTDVTHVA
Ga0314858_111019_581_6973300033742Sea-Ice BrineIDIIGNTSYTAVNKTNSASYSDVDVVGNTSYTDVTHVV
Ga0348336_083633_1021_11433300034375AqueousQDVDIVGNTNYTAVNKTNSASYSDVDVVGETSYTDVTHVA

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.