NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold YNP3_C2749

Scaffold YNP3_C2749


Overview

Basic Information
Taxon OID2014031003 Open in IMG/M
Scaffold IDYNP3_C2749 Open in IMG/M
Source Dataset NameHot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP3 Monarch Geyser, Norris Geyser Basin
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3238
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location
Location NameYellowstone National Park, WY
CoordinatesLat. (o)44.7242925Long. (o)-110.7056131Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028973Metagenome190Y
F057170Metagenome / Metatranscriptome136N
F063429Metagenome / Metatranscriptome129N

Sequences

Protein IDFamilyRBSSequence
YNP3_80510F063429AGGMGMSGEMEKPDVNEEQMDIAQRIEQAFTDSYKQDVKNGIVPWADASRIIEYMDYMAQEGLDSENLIEYLAKRSGIDLDAFKQMWAKLTDEQKEDLLNEIAHNIAFDGFTGLIKAIVDDLNRQKKYRKDRGKVLKYALYYICDDDSVDYDGLEDVIISVFWPENKKKKDEEAYEDFVRGLELAKYLDEETIKEAITIYLVFGIAESC
YNP3_80530F028973AGGVAQVTEEEEKRAQETVDEIIRELEEHHANGDWDKFFDDEVLDVLLLTTPDKEDIFGFSILLSYGGPTVEFLCNRGDGKIIYSYGDVEVKRDVNPDVCDDIINYLDS
YNP3_80540F057170GAGGMTTRGIIEVFNSQNELLSRIYVHGDMYPDNGVMCEVVKHLGKRYLVNGIPPDGFFDVINGMDNLAALVTAHLTRWYTKIIRRFADVKKNDLAAGYVYLYPFNLDIKNTDAEYIYELRPMMDEEKLVYPGGARKVLDVVRVTAKRYEWWNGTGPTDFFDGPLRDFAKQYCKA
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