NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold YNP3_C3594

Scaffold YNP3_C3594


Overview

Basic Information
Taxon OID2014031003 Open in IMG/M
Scaffold IDYNP3_C3594 Open in IMG/M
Source Dataset NameHot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP3 Monarch Geyser, Norris Geyser Basin
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1840
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Vulcanisaeta → unclassified Vulcanisaeta → Vulcanisaeta sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location
Location NameYellowstone National Park, WY
CoordinatesLat. (o)44.7242925Long. (o)-110.7056131Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013613Metagenome / Metatranscriptome269Y
F077496Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
YNP3_107140F013613AGGAGGMPRPRKYPDRGVTLTAYVSRELYERIVGLARSRGLSVSEVVQELLMKGLEGSVVAAADPPDPPEDSLQAALKGLEPLERERVLQFMKGLEDAEARLAKLGPNVRQARTGRPTLLDVVNQQEVAKLKGTVVDLKRTYERSIKRIVRDPVALNMIGERLLRLMKELGVPP
YNP3_107150F077496N/AVARLSAPQEEVGARLGRRKKWSGDAVIMTIYIPLDLKKELEARAAARRKSLSEYAVGLILKGLEAEKAEEANKDAKA
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