Scaffold YNP3_C460

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold YNP3_C460

Scaffold YNP3_C460

Overview

Basic Information
Taxon OID	2014031003 Open in IMG/M
Scaffold ID	YNP3_C460 Open in IMG/M
Source Dataset Name	Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP3 Monarch Geyser, Norris Geyser Basin
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	1466
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location
Location Name	Yellowstone National Park, WY
Coordinates	Lat. (^o)	44.7242925	Long. (^o)	-110.7056131	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F058699	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
YNP3_12220	F058699	N/A	LLGERVEGEENGPYRRITLEWYRDLETGTFLAKLTVEGEGIKEGKREAVFTLSSDRIADVDLLNPSELVEKLMFNSDSLNDLISYIGGDLIRSTLGNLNSMSVADYLIYFFIKMLAEVIARGVMILDANKLKMSLSNEKS

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