Scaffold YNP7_C5636

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold YNP7_C5636

Scaffold YNP7_C5636

Overview

Basic Information
Taxon OID	2014031006 Open in IMG/M
Scaffold ID	YNP7_C5636 Open in IMG/M
Source Dataset Name	Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP7 Chocolate Pots
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	6265
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location
Location Name	Yellowstone National Park, WY
Coordinates	Lat. (^o)	44.710087	Long. (^o)	-110.7413395	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F078763	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
YNP7_154330	F078763	N/A	MSNKQFFSGLEEALARLVGVILTLTFFLIYIWAVNGVSLSWLQAFFAFGLFWLVYEAIAFGLFILFDFFAKKSESETSTKNPNGPDTGTGSVFTGDSGSNSACDSGVGEGGGNC

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