NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold YNP3A_C225

Scaffold YNP3A_C225


Overview

Basic Information
Taxon OID2016842001 Open in IMG/M
Scaffold IDYNP3A_C225 Open in IMG/M
Source Dataset NameHot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP3 Monarch Geyser, Norris Geyser Basin
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)4737
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location
Location NameYellowstone National Park, WY
CoordinatesLat. (o)44.7242925Long. (o)-110.7056131Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061983Metagenome / Metatranscriptome131Y
F063848Metagenome / Metatranscriptome129N
F076263Metagenome / Metatranscriptome118Y
F080245Metagenome115N
F085905Metagenome111N

Sequences

Protein IDFamilyRBSSequence
YNP3A_57800F063848N/AVAKKRRSVHDPTLSVIHYQEQLEKMSKAYEKSSTRRNQRAVNGFTVLKQVQNTVRDYLNEVSTSLKAPVIAQLAVEFIGIGMAFLKASNEGLNSYALSGRLAQIATLRATHIVHATTLSCAQVGEIINGMLKKLSGVTADPLTFTENDGVCEAKVANPLTKLSVASASTGYTVALTDILKAKTPEEVLMAK
YNP3A_57810F085905N/AMEEQLSFPSSRLSQFDYVTMNAYWLNTRLKYFTDPMLYAVATGIWVINLMDDVDIAETGTEKNFEYGLIYVYSNSRIDTLFIVALTHYFNVKREREYYRSIPMDALQNVMKSLVDFMNDKLKILDKLKEKLDERVVLMMWNQLYIFVMGFLYGLYGRDAEAVFQGVVARHLLPYSVLEVIRRHLKK
YNP3A_57830F061983AGGAGGLKKYVFKVKVVQIKLVNDEGVLSEQEFEHVKKTRIYKGMKVLEIKDLGFDSFWRFTHYYELVAVSEGGGLFDCYYGDVIDVEKLKDVGAIVVKENDSEPVRTMKTLVARWYNKKLVEEEKAFETCTKFIM
YNP3A_57850F076263GGAMLSAEDLSAILDDLEDICARIPDSVTFHPTLEIRRHHANEEAMYIKFDCRDHKYTLTIVRNGVAKTTRVSSREQLYRRLFPEYSPGYSGSYTEEFWGGE
YNP3A_57880F080245N/AMIFVWSARVIIPGFRDEVFVSPALINRYAELTEDVYEVGMFMVPHKGHALLFLPTMVIKVDDELMKNLEQTTIEDLNIPLNTISNVFT
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