NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold YNPsite03_CeleraDRAF_deg1118686644062

Scaffold YNPsite03_CeleraDRAF_deg1118686644062


Overview

Basic Information
Taxon OID2022920002 Open in IMG/M
Scaffold IDYNPsite03_CeleraDRAF_deg1118686644062 Open in IMG/M
Source Dataset NameHot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP3 Monarch Geyser, Norris Geyser Basin
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)814
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location
Location NameYellowstone National Park, WY
CoordinatesLat. (o)44.7242925Long. (o)-110.7056131Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040509Metagenome / Metatranscriptome161N

Sequences

Protein IDFamilyRBSSequence
YNPsite03_CeleraDRAFT_135750F040509GAGGMSGQENSEKKGPGVVGFSRALTGRSFVSVNHDFEEIPIYLSAGISEDRRFNSFAKEHAVFILGVIAGVNETLWKAYHFGPAHDILDKPENLAQYTTLLLRLKALYEKYESEKRINVGDILEDLDNIVTELIDFSREIMKQSNCKQS
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