NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold YNPsite03_CeleraDRAF_scf1118686648288

Scaffold YNPsite03_CeleraDRAF_scf1118686648288


Overview

Basic Information
Taxon OID2022920002 Open in IMG/M
Scaffold IDYNPsite03_CeleraDRAF_scf1118686648288 Open in IMG/M
Source Dataset NameHot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP3 Monarch Geyser, Norris Geyser Basin
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1348
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location
Location NameYellowstone National Park, WY
CoordinatesLat. (o)44.7242925Long. (o)-110.7056131Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013613Metagenome / Metatranscriptome269Y
F077496Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
YNPsite03_CeleraDRAFT_149540F013613AGGAGGMPRPRKFPDGGVVISTYVPYELYEKVKELARSKGKNISEIAYELIKRGLEASGASAADPPDPPEDALHVALKGLEPLERERILQFVKGLEDAEAKLAKLGPNVRQARTGRPTLLDVVNQQEVTKLKGTVVDLKRTYERSIKRIVRDPAALNMIGERLLRLMKELGVPP
YNPsite03_CeleraDRAFT_149550F077496N/AVARLSAPQEEVGARLGRRKKWQDAVIMTIYIPLDLKKELEARAAARRKSLSEYAVSLILKGLEAEKAEEANKDAKAEEVP
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.