NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold YNPsite05_CeleraDRAF_deg1119010631771

Scaffold YNPsite05_CeleraDRAF_deg1119010631771


Overview

Basic Information
Taxon OID2022920003 Open in IMG/M
Scaffold IDYNPsite05_CeleraDRAF_deg1119010631771 Open in IMG/M
Source Dataset NameHot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP5 Bath Lake Vista Annex
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)967
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location
Location NameYellowstone National Park, WY
CoordinatesLat. (o)44.96507Long. (o)-110.71215Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005302Metagenome / Metatranscriptome405Y
F064295Metagenome / Metatranscriptome128N

Sequences

Protein IDFamilyRBSSequence
YNPsite05_CeleraDRAFT_189530F005302AGGAGMAHSGVISGLYAGNFAVEISTDGTNWTAVSDATVKIDDVEMTRPSGEAYVGGSSDYATITIGKREPVEITLTFLYSEATGAAATAIYDQFESATPRLGVRWSPTGLVASARAYATSNDGNATGLGVITGVTLSALDPSEAEPYVMMVTVRTPTLRQYAIAATNPTNLA
YNPsite05_CeleraDRAFT_189540F064295AGGAGMSEPAKIFDVDALRVDRTALTIREAATLLNRELTPEVIARLVRKAIGNQADQFPIRALKAVYERALPKIFEPDEAIRSKVAGLTPNVTT
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