NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold YNPsite05_CeleraDRAF_scf1119010636345

Scaffold YNPsite05_CeleraDRAF_scf1119010636345


Overview

Basic Information
Taxon OID2022920003 Open in IMG/M
Scaffold IDYNPsite05_CeleraDRAF_scf1119010636345 Open in IMG/M
Source Dataset NameHot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP5 Bath Lake Vista Annex
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1422
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Halobacteriaceae → Haladaptatus → Haladaptatus paucihalophilus → Haladaptatus paucihalophilus DX253(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location
Location NameYellowstone National Park, WY
CoordinatesLat. (o)44.96507Long. (o)-110.71215Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003460Metagenome / Metatranscriptome485Y
F004367Metagenome / Metatranscriptome441Y

Sequences

Protein IDFamilyRBSSequence
YNPsite05_CeleraDRAFT_21540F004367AGGAGGMGGTTTSNGRDGEMAWVEGLLTGAGASIGRVLDERQVHAVELALEVFAYLLAAMPAERAPVADIIRLLKFYSNGVRNAKSES
YNPsite05_CeleraDRAFT_21560F003460N/AMPKASRDERYFHDLQHAYGVLHEVLAPRGLYAEASLMLMVNLRRPGELRDVTVELIIRARAGGSPVWRAYESLKVPGRMKLRSIAGVLFGLMMRATYDVEAQISLPGEGRPHHQGGA
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