NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold YNPsite20_CeleraDRAF_scf1119010803427

Scaffold YNPsite20_CeleraDRAF_scf1119010803427


Overview

Basic Information
Taxon OID2022920020 Open in IMG/M
Scaffold IDYNPsite20_CeleraDRAF_scf1119010803427 Open in IMG/M
Source Dataset NameHot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP20 Bath Lake Vista Annex - Purple-Sulfur Mats
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1988
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location
Location NameYellowstone National Park, WY
CoordinatesLat. (o)44.96507Long. (o)-110.71215Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F060939Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
YNPsite20_CeleraDRAFT_297250F060939N/AMLWRLRVWFQDASGTTSYTGAWLRSPNETAIFAFVDALRGLSNAQITHVDISRRFPYTSQVPSGRDRGVAMFVQPAYNPDAPGVVSDAFPMWVPESELYAVRDLWGYPITVRGFVSRAGYNMDEVVPEDGEPQSLDNEYPDSTDDYYLVAIRRNFWHRLLRDARAYNTLSMTLPDEKARRVRLDIRDLFLG
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