NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold LTJ07As871_J07ABscf085619

Scaffold LTJ07As871_J07ABscf085619


Overview

Basic Information
Taxon OID2025206003 Open in IMG/M
Scaffold IDLTJ07As871_J07ABscf085619 Open in IMG/M
Source Dataset NameHypersaline water microbial communities from Lake Tyrrell, Victoria, Australia, sample J07AB- all scaffolds
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1142
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline Water → Hypersaline Water Metagenomes Of Microbial Communities From Lake Tyrrell, Victoria, Australia

Source Dataset Sampling Location
Location NameLake Tyrrell, Victoria, Australia
CoordinatesLat. (o)-35.309Long. (o)142.7795Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054456Metagenome140N

Sequences

Protein IDFamilyRBSSequence
LTJ07AB_173880F054456N/ARWESVTNLQSDDLERLEKSDRNERYLEQAEGNQGSDDPPIPGGPLADAQHLAETPRDEWGKDERAEAEEAMNFFSRTLAQFDQSEGSPLIESESPKIHKDELSLMRWGVDPDPSDDFL
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