NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold EFn_FUOFX6F01DTOJX

Scaffold EFn_FUOFX6F01DTOJX


Overview

Basic Information
Taxon OID2027040001 Open in IMG/M
Scaffold IDEFn_FUOFX6F01DTOJX Open in IMG/M
Source Dataset NameViral communities in wastewater treatment process (EF-no assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Illinois, Urbana-Champaign
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)542
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Tenacibaculum → Tenacibaculum finnmarkense(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Nutrient Removal → Dissolved Organics (Anaerobic) → Activated Sludge → Wastewater → Wastewater Viral Communities From Wastewater Treatment Facility In Singapore

Source Dataset Sampling Location
Location NameSingapore: Singapore
CoordinatesLat. (o)1.332Long. (o)103.756Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013948Metagenome / Metatranscriptome267Y

Sequences

Protein IDFamilyRBSSequence
EF_na_514410F013948GAGMRESFKKIVAYIFRSWEDEPEPTHPRLKILPPFLLELLAYLIGLAILYQIGAYLWSII
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