NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold FACEOR_FYWIORV02GDRKV

Scaffold FACEOR_FYWIORV02GDRKV


Overview

Basic Information
Taxon OID2032320006 Open in IMG/M
Scaffold IDFACEOR_FYWIORV02GDRKV Open in IMG/M
Source Dataset NameSoil microbial communities from sample at FACE Site 5 Oak Ridge CO2+
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)522
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Face And Otc Sites In Usa

Source Dataset Sampling Location
Location NameOak Ridge Integrated Field Research Center, Tennessee, USA
CoordinatesLat. (o)35.94106884Long. (o)-84.4Alt. (m)Depth (m).05
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064501Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
FACEORE_2951190F064501GGCGGMTADQSPKQAGKAQAALTRTVQAVTQPGGKDVDWGKVGAVASIVGAVAVIHGLKTRSWRYLHTAAVALVIGAGAAGFLKARYAGAPQAPEN
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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