Scaffold ErSWdraf_F5BXKTZ02IG1GP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold ErSWdraf_F5BXKTZ02IG1GP

Scaffold ErSWdraf_F5BXKTZ02IG1GP

Overview

Basic Information
Taxon OID	2035265000 Open in IMG/M
Scaffold ID	ErSWdraf_F5BXKTZ02IG1GP Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Swedish Lakes - surface of Lake Erken
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Royal Institute of Technology
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	507
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Swedish Lakes

Source Dataset Sampling Location
Location Name	Lake Erken, Sweden
Coordinates	Lat. (^o)	59.84	Long. (^o)	18.63	Alt. (m)		Depth (m)	0 to 2
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F017133	Metagenome / Metatranscriptome	242	Y

Sequences

Protein ID	Family	RBS	Sequence
ErSWdraft_13498950	F017133	N/A	MSSWTMFAKVSHYPKGMMNLCPCGQVVLAPALYHEGQPYWENPNKCKELFKEKINE

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