NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold ErSWdraf_F5BXKTZ02IV69H

Scaffold ErSWdraf_F5BXKTZ02IV69H


Overview

Basic Information
Taxon OID2035265000 Open in IMG/M
Scaffold IDErSWdraf_F5BXKTZ02IV69H Open in IMG/M
Source Dataset NameFreshwater microbial communities from Swedish Lakes - surface of Lake Erken
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterRoyal Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)515
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Swedish Lakes

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.84Long. (o)18.63Alt. (m)Depth (m)0 to 2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006112Metagenome / Metatranscriptome381Y

Sequences

Protein IDFamilyRBSSequence
ErSWdraft_7194170F006112GAGGMKQDYTMYIYKRDRRCKTGERLFSTTVWAGRDAEAMRRECNELYDLYPATQGWRFEYFPTMKTVTNLMSGKDIQIPHDT
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