Scaffold FACENC_F56XM5W01B4YXJ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold FACENC_F56XM5W01B4YXJ

Scaffold FACENC_F56XM5W01B4YXJ

Overview

Basic Information
Taxon OID	2035918004 Open in IMG/M
Scaffold ID	FACENC_F56XM5W01B4YXJ Open in IMG/M
Source Dataset Name	Soil microbial communities from sample at FACE Site 2 North Carolina CO2-
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	517
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Face And Otc Sites In Usa

Source Dataset Sampling Location
Location Name	Orange County, North Carolina
Coordinates	Lat. (^o)	36.0	Long. (^o)	-80.934	Alt. (m)		Depth (m)	.1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F062204	Metagenome / Metatranscriptome	131	N

Sequences

Protein ID	Family	RBS	Sequence
FACENCA_4243600	F062204	GGAG	MKRALIGSLSFLAVIVGTQAANAQADINPNLYPPYRGAPAAQQPWEWYAGPGPMRRGSQCVVDVDSGRGYGFMKDCPAPQAAARPRARVAHRHPRQSVYR

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